TCONS_00053387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053387
Unique NameTCONS_00053387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053387 ID=TCONS_00053387|Name=TCONS_00053387|organism=Clytia hemisphaerica|type=transcript|length=544bp
AGATGATGAAAAACTTCACGCGAAGGCTTGGCAAAACACACTGAAGGATG
ATTTTCTTGCACTCCACCGTATCGTCCGAAGGTGTTGTCTGGTACAAGTG
GACCAAGACGAAGAAAAGCAAATGAAGACAACACTTCGACATTTAAGATC
TTCTAATTTCCCAATACACATGACATTAAAGCAACTCAAATTCCAGTTCC
CAAACGATACTGAGGAGTTACAAACAAAGTATTTGATACGCTGCATCATC
GAAGTCAGCAACCTGAAATCTTTCAAACATCTAGcaattGGTAAATCTCA
AACGGAATCTGAAgatctaaaacaaaataattcaaaGGATGTGGAAAATA
AAATGACTATGATCACATTTGAGGCTGAGCTCTCTTTATCCTCTGAGAAC
GATTGCCTTTCTTTGgacactggaaaagaaaaacctGATGAGCAGGAAGA
GAAGAGTCTTTCCCTGGCAGAAACTTTTGAGAAATTGgatgtagaaaaag
aagTTCCCTTGAGGCGGAGGTTTCTTTCCCTTCTGAAACAGgta
Run BLAST on NCBI

transcript from alignment at scaffold_229:6988..8866-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053387 ID=TCONS_00053387|Name=TCONS_00053387|organism=Clytia hemisphaerica|type=transcript|length=1879bp|location=Sequence derived from alignment at scaffold_229:6988..8866- (Clytia hemisphaerica)
AGATGATGAAAAACTTCACGCGAAGGCTTGGCAAAACACACTGAAGGATG
ATTTTCTTGCACTCCACCGTATCGTCCGAAGGTGTTGTCTGGTACAAGTG
GACCAAGACGAAGAAAAGCAAATGAAGACAACACTTCGACATTTAAGATC
TTCTAATTTCCCAATACACATGACATTAAAGCAACTCAAATTCCAGTTCC
CAAACGATACTGAGGAGTTACAAACAAAGTATTTGATACGCTGCATCATC
GAAGTCAGCAACCTGAAATCTTTCAAACATCTAGGTAAATATAAACTCCA
TTTTAAATTGAGAAAGTTCAATGCGAAATTTTTGAAAAAATATCTCTATA
TCTCCCTTGTTTTTTATGTTAAAATCAAGAAATTCAAAACCTCTTTAAAA
CCATGTTGAAATATGTCCACACTGTGTTATAGTGGGTCATATATTGTCGT
CTGTCATTGTAAAGGGTCTTTTTTCCACATTTTACCAATAAAATAGCACT
GAAGTCGAACTGATCATTTAGTTTATTGCAGGCGTCATTTACCTCCCATC
AAGAAGGTTTAAATTAAACGGAATTATACTATGATAAGATGATTATTGTA
GTCAACTGTATTCTGTACTCCTCATCTCCACTGAATATGTTAAATACCGA
TAGAAATATCGATCTCATTTTTTAGCAATTGGTAAATCTCAAACGGAATC
TGAAGATCTAAAACAAAATAATTCAAAGGTAGAAAATTAAGATAGATTTT
TCTTTCTGTAGGGTGTCTTTACTGTCAAAAAGTCTATCTAGACATATTCT
CAGGCTAAATTTCATAGAAGTCTTAGTACTATTTAGCAATGTGAATTTGA
TTTTGAATTAGCGCTAATTAACCATTATTCGATACTTACCTGGTAAACTA
ATGCTTGTAATTCGAAACTTCTTTTAGACCCTGTAAGTAAATGGATACCC
AGAAATTAGTTTGTGGTAGCGAATGTGTATTAAACTTTGTTATTTTTTAG
GATGTGGAAAATAAAATGACTATGATCACATTTGAGGCTGAGCTCTCTTT
ATCCTCTGAGAACGGTAGGCTTCGTTTTTTGAAGGGAATCCGTCTGTTTC
GAGACTTGTACTTTTAGCTTACAGAGATTACTCAGCACATAGTAAGTGGA
AGGAGAGATGAAAGATGAAAGGGTAATGAAAGGGTATACCTGGGGGTACC
AAGGCAGATGAGGTACGGGGAGGTGTCGCTGGTTTACTAGTTGTACTTTG
AGATTACAAACTTTTTTGAGGAAGCTGATTTCTGTTTGAAGTCACGAGAG
TAGGATTTCCTCTCCTTTCATACTTTTCCTTAGCTTAAAATTACATCATC
AACTTGAGTTTTCAATTATTCTTTACTTTATTGATTTAGGAACTCCAGAT
TGCCTTTCTTTGGACACTGGAAAAGAAAAACCTGATGAGCAGGAAGAGAA
GAGTCTTTCCCTGGCAGAAACTTTTGAGAAATTGGTACATACAGGATTAA
CTTTTAATATTGACTATTTTTTTCTAACCAAGATGAACCTAACCAAAAGT
TTATATACTATAAGGTACTTTCAAGTCTCACCTCAAACGACCGGCACAAA
CTGGTCAATCTTAGTAAAATGAGGAAAATTCAGCTACCTAATTTTCTTCC
TAATAGCCTTAGTGCGGGGACTTAATTTCGCAGGTGATTCACTGTACATG
TGAGATAACATAGATAGACCTTTTCAAATTTACATTTGAACCTAATTCTG
TGAAATCAGCTGAATTCTATCTCTAACTTCTAACTTCAGTGTGTGTTCAA
TCCCCGGCACTTTTTATTTTAGGATGTAGAAAAAGAAGTTCCCTTGAGGC
GGAGGTTTCTTTCCCTTCTGAAACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033701XLOC_033701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053387-exon-scaffold_229-1575043694:8583..8866TCONS_00053387-exon-scaffold_229-1575043694:8583..8866Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1575043694:8139..8191TCONS_00053387-exon-scaffold_229-1575043694:8139..8191Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1575043694:7803..7866TCONS_00053387-exon-scaffold_229-1575043694:7803..7866Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1575043694:7383..7468TCONS_00053387-exon-scaffold_229-1575043694:7383..7468Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1575043694:6988..7044TCONS_00053387-exon-scaffold_229-1575043694:6988..7044Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1510915933:8583..8866TCONS_00053387-exon-scaffold_229-1510915933:8583..8866Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1510915933:8139..8191TCONS_00053387-exon-scaffold_229-1510915933:8139..8191Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1510915933:7803..7866TCONS_00053387-exon-scaffold_229-1510915933:7803..7866Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1510915933:7383..7468TCONS_00053387-exon-scaffold_229-1510915933:7383..7468Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1510915933:6988..7044TCONS_00053387-exon-scaffold_229-1510915933:6988..7044Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1491911889:8583..8866TCONS_00053387-exon-scaffold_229-1491911889:8583..8866Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1491911889:8139..8191TCONS_00053387-exon-scaffold_229-1491911889:8139..8191Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1491911889:7803..7866TCONS_00053387-exon-scaffold_229-1491911889:7803..7866Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1491911889:7383..7468TCONS_00053387-exon-scaffold_229-1491911889:7383..7468Clytia hemisphaericaexon
TCONS_00053387-exon-scaffold_229-1491911889:6988..7044TCONS_00053387-exon-scaffold_229-1491911889:6988..7044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_229supercontigscaffold_229:6988..8866 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.964488	0	0	0.987421	0	1.00621	0	0	0	0	0	0	0	0	0	0	0	0	0.795929	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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