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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049752 ID=TCONS_00049752|Name=TCONS_00049752|organism=Clytia hemisphaerica|type=transcript|length=1955bpRun BLAST on NCBI protein sequence of TCONS_00049752-protein >TCONS_00049752-protein ID=TCONS_00049752-protein|Name=TCONS_00049752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp MEKMATEMESSNEIAVIDKVKEILGDSAKFKPITVSKEVDPVSDVGNLLLRun BLAST on NCBI transcript from alignment at scaffold_166:140088..153240+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049752 ID=TCONS_00049752|Name=TCONS_00049752|organism=Clytia hemisphaerica|type=transcript|length=13153bp|location=Sequence derived from alignment at scaffold_166:140088..153240+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:140088..153240+ >TCONS_00049752 ID=TCONS_00049752|Name=TCONS_00049752|organism=Clytia hemisphaerica|type=CDS|length=13767bp|location=Sequence derived from alignment at scaffold_166:140088..153240+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049752 vs. Swiss-Prot (Human)
Match: RRS1 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2) HSP 1 Score: 264.618 bits (675), Expect = 3.127e-81 Identity = 140/299 (46.82%), Postives = 197/299 (65.89%), Query Frame = 2
Query: 245 VKEILG-----DSAKFKPITVSKEVDPVSDVGNLLLSDLQP-VDTKQFKSNKEIFLKNLARDNAQLLFNQIWELPIERVDSVVVAQLPETNTFLPREKPVPKPKPLTKWEEYAKKKGIENKKRSRMVWDKELDQWKPRYGYKKANDDQAQWCMEVPVNKDPNEDQFQKAKDVKKERVAKNEYQRLRNISKAQKAAGNKSAPLSSKLKPEVKKDKERLTKEIDVAKVSTASMGKFQEKLPNEKPNKKTGKKRKFETVCGDMNDEKRRALDIFNKIN-KPNTLDMNKAINKKMAQDQQLNA 1120
V+E+L ++ K + ITV KE++ D+GNLL SD P + E L+ LARDN QLL NQ+W+LP ERV+ +VA+LPE T LPREKP+P+P+PLT+W+++A+ KGI KK++ +VWD+ QW+ R+GY++A DD +W +EVP N DP EDQF K KKERVAKNE RLRN+++A K P ++ L P + KE L + + VAKVSTAS+G+FQE+LP EK + +GKKRKF+ + GD EK+ L++ +N K LD+ +A NK+M ++ Q A
Sbjct: 6 VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM----QLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEA 300 The following BLAST results are available for this feature:
BLAST of TCONS_00049752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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