TCONS_00049705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049705
Unique NameTCONS_00049705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049705 ID=TCONS_00049705|Name=TCONS_00049705|organism=Clytia hemisphaerica|type=transcript|length=939bp
CTTATCACAGTATGGAGGAATATTCATTAAGAATAGTGTTGGACCTTCAC
CAACGTGCTTTTTATAGAAAATACAGTGAGGTGAGACAGAATCAATCTCA
TTTTCACTTGAAGTTgaccaaaaagaaatttttagcaCGTGAAAGTCTGC
CATCTTGAAATCATATAAACTTATGAAATAACTAGTCTAGCTGTGAGTAA
GTTCTAGTCtagaaaaacaaagacaatcGCTAGTCCCAGTCTCGAATTTT
CGTCGCGCATTGGCCATTCTTAGTTGTTGGCAGATCTTTTCACGGATTCA
ATCTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGT
TGTATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCT
CCAGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAG
GACCAGTATGGCTGATCTGGAAAAATACTTCAAGAAATATGGAGATGTTG
GAGACATTTACATCCCCAGAGACCGGAATACACAGGAGTCACGTGGTTTT
GCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAGATGCAATGGATGG
CATGGATGGAAAGGTCATTGATGGACGTGAAATTCGAGTAGCCATGGCTA
GGTACGGTCGACCAGCAAACCAATATGATCCAAGACGACAAGGACGCAGT
GGAGGGCGTGGTAGTCGTGATCACAGAGATCGAGACAACCGTGACCGAGA
TCGAGATCGATCAAGACGATCCCCTCGCAGAAGGTGAGCTTTTAATTCAG
GGATACCCCTTCTATTCGATCATATTTTAAGTGAAGCCCTctgaagcatt
tttaaaaaactaaagCTTCATACGTTTGACAATCATTAATTATTGCTATT
TgatgaatgtttgaaaaaccaCTTGACAGGAATTTTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_165:179583..185839-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049705 ID=TCONS_00049705|Name=TCONS_00049705|organism=Clytia hemisphaerica|type=transcript|length=6257bp|location=Sequence derived from alignment at scaffold_165:179583..185839- (Clytia hemisphaerica)
CTTATCACAGTATGGAGGAATATTCATTAAGAATAGTGTTGGACCTTCAC CAACGTGCTTTTTATAGAAAATACAGTGAGGTGAGACAGAATCAATCTCA TTTTCACTTGAAGTTGACCAAAAAGAAATTTTTAGCACGTGAAAGTCTGC CATCTTGAAATCATATAAACTTATGAAATAACTAGTCTAGCTGTGAGTAA GTTCTAGTCTAGAAAAACAAAGACAATCGCTAGTCCCAGTCTCGAATTTT CGTCGCGCATTGGCCATTCTTAGTTGTTGGCAGATCTTTTCACGGATTCA ATCTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGT TGTATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCT CCAGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAG GACCAGTATGGCTGATCTGGAAAAGTAAGTCTAAATTTGTCATTCAGTTA AAATTGATCATTTATCGTAATCCTCTTTACTTACCCTCTGGCTTTTTAGA ATCAGAGACAGTGGTATAAAAAGAGTCTTTTCTGAGTAAGAATTTATCAA TGCTGTACTGTATGTATGTATATTGGAAATCTTGGCTGATTTGTTGTGTT GAGTCAATTTTTCATCCTCAGATTAAAAACTTTGCTATTAGCGTAGACCT TTTCGCCTTTCCATCCGCCATATTGAATTGTATGCAAAAATTATGGTAGC CAAATTGCCGTGGTGAAATTCCCTTAGAAAGTATGCAAAACATATGNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNGGATATCAAGGTGTTTGACGTTTTTGGGTGTGGGTGGGTG GGTCAGCTTTTAAAACGTCAATTGACGTTCTTCTAACCTAGAATCGATTT GTGACTGACCCCGCCCTAAGGAGGCGATTCTATCTTTGAAAAGGTGGTTT TTTGTGGTTTGAAAATGGAATAACTTTGGAACTACTTAACCAATTTTAAC AAATGACCCCTCATTTTCCTCACAAAGGTAAGGACTTTCAAATAAAATTA GTTTGGTTTTCAAAATTTGAGGGGAAAATTTTGGCCTGACCACCCTATTT TAGTTGTACGCCGAAGATCTTCGGCGTTAGTTACACGAAATCCATACTGG GTAATGGGCCATTCCAGAAAATTTTTGTTACCCCCCATCGGACGACGTGC ATTTTTAAATATTTTCTAGCCTCGGAAATAATTTTTTTTTTCAGTGGTGG TCAGAAAGTTCGATAAAAATCCATGTACTTTTGCAAAATGCATTGGAATT CCACTCTTTTTGTCTGTTTTAATTGAATTGCCTTGGAAATTCATACATTT TCTACTCTTGCCTTGGAAATTTTGAATTTTGGTGAAAACTTGTGCCCTCC GGAAATCCTGTGTCGTCCGCCCCCCTGTTACAGACAAATTCTGGAATGCC CCAATCTTGTAGAAGAAAGATTAAATTTGCTTCTTTTTAAAACTAGAAAT AATCAAATTCGCCCATCTCTTAGAACTAGCAGTAGCACTTCAAAAACCAT AACATCACCCACGAAGGTACAAAAATAATCCTTATTCGGCTGACGGTAAA TTATTCTCCTGGGAATAGAATCGCCAAACAATCAAATCAAAACATCGATC TGAATGCGTGACGTCGAGTCATAATTACTGCTTTCAGTTTGCGTGTTTTG CGTGTGTACTCCGTCTTCGTGGAATTTTTAATGGCATGAAAACAGAATAT GCTATGTCTTCAAGAACAAATTTCTAAAAGGCTTTTGTTGTTCGGTAAAT ACTTCTTTTTGGATTAAGAAATTCCATCTTTTATTGTTCTAATGATTATA AAATTTATTTATAAGATGCTTTGTTGTCTTTTTAATCTTTGTGTAAACTT GCATATGTTTTGCATATTTTCCAACTAAATCCAACCACAGCTTTTTCGTT CCTATATTTTTGCATACAATTCAAGATGGCAGATGGAAAGGCGAAAAGGT CTATAGTCGTTTGAAAGAACACGACGATCTTACTAATCACTCCAGAAGAA TATTGGTAATTTCCAAAGCACTTTGAAAAATTGACTGGATTACAGAGTGT TTTTTTTTACCTGAAAATTCCTGTTGTCCACCCCCTATATAAAATTTTTT TTTGGCTTGAAATCTAAAATTAAAGTAAATCAGCCTGACTCTGAATCCAG TTATCTTGATTGATATAGGAGTTTTAGTCTATACTGTTTGTTATTCAATA GACTATTGTGTTCTCCCAAACCACAATTTCAAGGCCAGTAAATATCTCAA AACTATTGAAAATCTGTTCAAATTTTGATATTTTTTCATTTGATGTTATC AATAAAAATCTCATTGGTTGTAACTTGTATCCATTTTAGCAACAAGCCAT TTTAAGCTAATTTGGTTTGCAAAAAGTGCAAGTCTATAATTTAAACTAAT AAACTGTCTGGAATCTGTGAGATCTTTGACTTGAGCAAAATAAATCTTCT CAAAAATTTCAAAACTGCTTCTTTTTAGCAAGAAAAATAATCAGTAAAAT TAAATTTAAAAAAAGGCAAGCTTTACTTAATGTTTGTAAAGGTTCTTTGA CAAAAAACTTTCGAATTTTTTATCGGCATTGGGCCGATAAGCTTCAGACC CCCTCCCCCTTGCTCTTATCAGCCAAAATTTTCGAAACCAATTTTTACAT CTTCGAAAACACAATTTTTTCCAATCATGTCCGCCATTGCGTTGGTCTTG CCTTCCCACCTGTCTTCGTTGAGTTTTTATCTATTTGCACCAACATTAAG TTTGTTCATACCCGCATTGATATTGTTAATCAAAACGAAAGTTAAAAAGA CCCGATGAAGTTGCAACATTTTGAAGGAAACGGCAGCACGCTGTCCAATT AAAAAAAAGTTTTTTATCAAAGCTAATTCAAAACTGTATTTTTAAAGTTG CGAATTTGTGCGCAAAGGTGAAAGCAAGTGAAATTGTATGCTTTCAGTTG AGTTTGTGGACGAAATCAGAAAGAAATTGGTAGTTAGACCCCCCCCCACC CCCTTATCAGCCCAATACCGATAAAAAATTTGAAAGTTTTTTTTGAGGAT CCTTAAAACGTTGACCCAAATTTTATTGCAGTGATACTTTTCTGGAAATA AAGGAAATGCTACCAGTCATTTTTCAGGCAAAAGCCCAATTATGGACTGA AAAATCAAATATTTATGTTTTTGATTTACTTTGCCACATTTTCATTAGAA ATAGAAAATCTAGCTAATTTTTTATATTCCTTCTCTAGTTGCAGTTTTCA CCAGCAGTCATTTCAAAGTTTAATAAGAAAGGGGTTATGAAAGCTGATTG CAGAAATGCTGATGAGAGAGCAGCTACTCCTGTCTGCAGTTTTCTATGGT TGCAGGTGCAAAGCAGATTCCGTTCATCTCAACTAAATTTCTTTAATGCT GTTATTACCATTATGAAAACCTGTTCAGTGCCTTAAGTTTGCTGATTCCT GTTTTGATAATCCCTCCACAATAGTTTCCTGGTTTGAATGTGGGTGAACA AGATTGATTGCAGTAAACTGCTGTCCAGTACTCAAACCACCATGTCTGGT TGAAAGCAGTTTACAAGGTCTCTCTTCGACATCAAGCAGAAATAAGTTCA AAATCCAAGCCGCCTTTTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTA TTTCCAAACCAGTCCAGTTACAAGTGATGCGGTTGCTGCTTTAATTGCAC TTTTACTACACTGGGTAAATACTGCTATCTTTAAACCTAACTGCAAAGGC TGTCATTTTGGAATAATCGAATCAAGGTATTCAGGCTCTGCAAATTTTAG GCTGAAAACATTGGGCACTGTACTAACTTAGGAGTGAGTCTGGCTTGATT GGCTTGGGCCAATCGACTGTAGCTCGAATTAAACGAATCAAAACTATTTT GGCTTTCCCCAGGCCTTGCCTATTTAATTGATACTTAAAAACTACTCCCT AAAAGTTAAAACTAGACACTTGATATGTATTTTTGAGAAGATAGATTTTA CTGCTTTATTTATCATTAACATTGAGAAAATTTTATGATTGAACTTTTAG ATACTTCAAGAAATATGGAGATGTTGGAGACATTTACATCCCCAGAGACC GGAATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAA CGAGATGCTGAAGATGCAATGGATGGCATGGATGGAAAGGTAGTTCATAT GACCTTATTTTTGCTGTCCTATAAAAGTTTCTTTATTNTTGATAATCCCT CCACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAGATTGATTGCAGTA AACTGCTGTCCAGTACTCAAACCACCATGTCTGGTTGAAAGCAGTTTACA AGGTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGCCT TTTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGTCC AGTTACAAGTGATGCGGTTGCTGCTTTAATTGCACTTTTACTACACTGGG TAAATACTGCTATCTTTAAACCTAACTGCAAAGGCTGTCATTTGGGAATA ATCGAATCAAGGTATTCAGGCTCTGCAAATTTTAGGCTGAAAACATTGGA CACTGTACTAACTTAGGAGTGAGTCTGGCTTGATTGGCTTGGGCCAATCG ACTGTAGCTCGAATTAAACGAATCAAAACTATTTTGGCTTTCCTCAGGCC TTGCCTATTTAATTGATACTTAAAAACTACTCCCTAAAAGTTAAAATTAG ACACTTGATATGTATTTTTGAGAAGATAGATTTTACTGCTTTATTTATCA TTAACATTGAGAAAATTTTATGATTAAACTTTTAGATACTTCAAGAAATA TGGAGATGTTGGAGACATTTACATCCCCAGAGACCGGAATACACAGGAGT CACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAGAT GCAATGGATGGCATGGATGGAAAGGTAGTTCATATGACCTTATTTTTGCT GTGCTATAAAAGTTTCTTTATTAATATTATCGTTAGCGGATGCATTTCCC TCGATTTCTATAAAACCAATCAGTGGAGAAGTGCGACTCTTCTTGTAATG GTTGATGTACATTTCTAACTTCTGCTTTAAGGTCATTGATGGACGTGAAA TTCGAGTAGCCATGGCTAGGTACGGTCGACCAGCAAACCAATATGATCCA AGACGACAAGGACGCAGTGGAGGGCGTGGTAGTCGTGATCACAGAGATCG AGACAACCGTGACCGAGATCGAGATCGATCAAGACGATCCCCTCGCAGAA GGTGAGCTTTTAATTCAGGGATACCCCTTCTATTCGATCATATTTTAAGT GAAGCCCTCTGAAGCATTTTTAAAAAACTAAAGCTTCATACGTTTGACAA TCATTAATTATTGCTATTTGATGAATGTTTGAAAAACCACTTGACAGGAA TTTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031517XLOC_031517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049705-exon-scaffold_165-1575043694:185366..185839TCONS_00049705-exon-scaffold_165-1575043694:185366..185839Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1575043694:180066..180204TCONS_00049705-exon-scaffold_165-1575043694:180066..180204Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1575043694:179583..179908TCONS_00049705-exon-scaffold_165-1575043694:179583..179908Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1510915933:185366..185839TCONS_00049705-exon-scaffold_165-1510915933:185366..185839Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1510915933:180066..180204TCONS_00049705-exon-scaffold_165-1510915933:180066..180204Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1510915933:179583..179908TCONS_00049705-exon-scaffold_165-1510915933:179583..179908Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1491911889:185366..185839TCONS_00049705-exon-scaffold_165-1491911889:185366..185839Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1491911889:180066..180204TCONS_00049705-exon-scaffold_165-1491911889:180066..180204Clytia hemisphaericaexon
TCONS_00049705-exon-scaffold_165-1491911889:179583..179908TCONS_00049705-exon-scaffold_165-1491911889:179583..179908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:179583..185839 -
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00049705 vs. Swiss-Prot (Human)
Match: SRSF2 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 143.665 bits (361), Expect = 1.450e-40
Identity = 67/95 (70.53%), Postives = 80/95 (84.21%), Query Frame = 2
Query:  392 KGPPDINGMVSLKVDNLTYRTSMADLEKYFKKYGDVGDIYIPRDRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPANQY 676
            + PPD+ GM SLKVDNLTYRTS   L + F+KYG VGD+YIPRDR T+ESRGFAFVRF+++RDAEDAMD MDG V+DGRE+RV MARYGRP + +
Sbjct:    5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 99          
The following BLAST results are available for this feature:
BLAST of TCONS_00049705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF21.450e-4070.53Serine/arginine-rich splicing factor 2 OS=Homo sap... [more]
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