TCONS_00049611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049611
Unique NameTCONS_00049611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049611 ID=TCONS_00049611|Name=TCONS_00049611|organism=Clytia hemisphaerica|type=transcript|length=495bp
ctatttttgaacttttgaatcctcagatcctaaggtcctcctAAGTCTCA
AGTCTCATgataaaactcagagttaaaactctacccttccaaccttcttt
agagcacttacaaatcgtttgtggttcaaaaacttcccggtgtatttctc
ttttttctcaaatattatgaccttgattgtacttCTCAAATATATAATGT
CAGCTGTCTTTCTAATTATTAAGCGCACACATCATTGCATTAACCACAAT
CTGGTCATTCAAATAACGTAAATAAAGATCATGGTAAATTTTAAAGCTTT
CTTAACACGATTTAAAAAGAGATAATTATAACCTTTACCACAATCTTAAC
ACACAAATAAAAATCATggtaaatttaaaactttcttattAAACATTACC
ACAATCTGGTCATTCAAATAAAAAGCATGGTAAACATGCTTGTAAATGTG
GTAaatatttataatttataacggtaaattttaaaactttcttaa
Run BLAST on NCBI

transcript from alignment at scaffold_161:291096..291760-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049611 ID=TCONS_00049611|Name=TCONS_00049611|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at scaffold_161:291096..291760- (Clytia hemisphaerica)
CTATTTTTGAACTTTTGAATCCTCAGATCCTAAGGTCCTCCTAAGTCTCA
AGTCTCATGATAAAACTCAGAGTTAAAACTCTACCCTTCCAACCTTCTTT
AGAGCACTTACAAATCGTTTGTGGTTCAAAAACTTCCCGGTGTATTTCTC
TTTTTTCTCAAATATTATGACCTTGATTGTACTTCTCAAATATATAATGT
CAGCTGTCTTTCTAATTATTAAGCGCACACATCATTGCATTAACCACAAT
CTGGTCATTCAAATAACGTAAATAAAGGTCATGGTAAATTTACCACATTC
ATGGCATTATTCAAATGGAGATTATGGTAAATTTTAAAACTTTCTTAACA
AACAAGAAAAAAGAGATAATGATAAACTTTACCAAAATCTTGTCATTCAA
ATAAAAATTATGGTAAATCTTACCACAATCATGGCATTCAAATAGAGATC
ATGGTAAATTTTAAAGCTTTCTTAACACGATTTAAAAAGAGATAATTATA
ACCTTTACCACAATCTTAACACACAAATAAAAATCATGGTAAATTTAAAA
CTTTCTTATTAAACATTACCACAATCTGGTCATTCAAATAAAAAGCATGG
TAAACATGCTTGTAAATGTGGTAAATATTTATAATTTATAACGGTAAATT
TTAAAACTTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031453XLOC_031453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049611-exon-scaffold_161-1575043694:291484..291760TCONS_00049611-exon-scaffold_161-1575043694:291484..291760Clytia hemisphaericaexon
TCONS_00049611-exon-scaffold_161-1575043694:291096..291313TCONS_00049611-exon-scaffold_161-1575043694:291096..291313Clytia hemisphaericaexon
TCONS_00049611-exon-scaffold_161-1510915933:291484..291760TCONS_00049611-exon-scaffold_161-1510915933:291484..291760Clytia hemisphaericaexon
TCONS_00049611-exon-scaffold_161-1510915933:291096..291313TCONS_00049611-exon-scaffold_161-1510915933:291096..291313Clytia hemisphaericaexon
TCONS_00049611-exon-scaffold_161-1491911889:291484..291760TCONS_00049611-exon-scaffold_161-1491911889:291484..291760Clytia hemisphaericaexon
TCONS_00049611-exon-scaffold_161-1491911889:291096..291313TCONS_00049611-exon-scaffold_161-1491911889:291096..291313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:291096..291760 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.386781	0	0.151192	0.692459	0	0.13441	0.318967	0.322603	0.313599	0.388443	0	0	0.165328	0	0	0.152769	0	0.194283	0.131866	0.139052	0.511088	1.08785	0.853386	0.26113	0.133185	0	0.515874	0	1.9331	1.12222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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