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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049606 ID=TCONS_00049606|Name=TCONS_00049606|organism=Clytia hemisphaerica|type=transcript|length=2365bpRun BLAST on NCBI transcript from alignment at scaffold_161:151179..197581- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049606 ID=TCONS_00049606|Name=TCONS_00049606|organism=Clytia hemisphaerica|type=transcript|length=46403bp|location=Sequence derived from alignment at scaffold_161:151179..197581- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049606 vs. Swiss-Prot (Human)
Match: JAG1 (Protein jagged-1 OS=Homo sapiens GN=JAG1 PE=1 SV=3) HSP 1 Score: 216.853 bits (551), Expect = 2.080e-58 Identity = 174/547 (31.81%), Postives = 246/547 (44.97%), Query Frame = 1
Query: 397 CLPNPCRNGASCTALNHGYSCTCTMGYQGKHCD-ELNRCQPNPCKNAGQCYESGNGYHCACASGYKGDMCEF-MDRCQPSPCQNGGHCIDHEDDFHCTCLDGFLGRSCEVTDYCGTNPCKNGGSCLNLDDRYECVCIDNAKGKQCQ-EIDHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCDEMS-HCSPNPC-----------SNG----------------GKCH-DFGHDYQCTCSNQNYGRHCENSHAQCSS--CDTNAECVRG----NCVCMSGYNGDGHFCEVS-SRCHPNPCENGGICHDTDEGITCTCVHGFLGHQC-QESNPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCEI--HSMCTPNPCHNGGVCHVMRETQSCHCPTRFTGEYCE--VDHCS--RCDANAFCDNGD----CRCDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTPCLSGSTCIDEPHGAYKCICREGYYGRNCDQ 1887
CL +PC N SC + G+ C C+ G+ G C ++ C PN C + G C + NG+ C C + G C+ + C+ PC N C + ++C CL G++G++C++ C+N SC +L + Y C+C G C+ +ID C ++PC NGG C N + F C CP ++G +CQ YC PNPC NG CY Y C CP +Y G C + HC PC SN GKC G + C C+ G +C + C S C C+ G C+C G+ +G +CE + + C NPC NGG C D C C +G+ G C + C C+N G C EG + C C + G+ C I +S C PNPCHNGG C V E+ +C C + G C + CS C + C +GD C C G+ G +C C +PC G+TC+DE +G Y+C+C G+ G C +
Sbjct: 340 CLSDPCHNRGSCKETSLGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKPCVNAKSCKNLIASYYCDCLPGWMGQNCDININDCLGQCQNDASCRDLVNGYRCICPPGYAGDHCERDIDECASNPCLNGGHCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQCYNRASDYFCKCPEDYEGKNCSHLKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNVCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGW--EGAYCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCDEATCNNGGTCYDEGDA-FKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICAQNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGP--DCRININE-----------------------CQSSPCAFGATCVDEING-YRCVCPPGHSGAKCQE 857 HSP 2 Score: 174.481 bits (441), Expect = 7.060e-45 Identity = 132/397 (33.25%), Postives = 182/397 (45.84%), Query Frame = 1
Query: 394 HCLPNPCRNGASCTALNHGYSCTCTMGYQGKHCD-ELNRCQPNPCKNAGQCYESGNGYHCACASGYKGDMCEFM-DRCQPSPCQNGGHCI----------------------------DHEDDFHCTCLDGFLGRSC-EVTDYCGTNPCKNGGSCLNLDDRYECVCIDNAKGKQCQ-EIDHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCD--EMSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCENSHAQCS--SCDTNAECVRGN----CVCMSGYNGDGHFCEVS-SRCHPNPCENGGICHDTDEGITCTCVHGFLGHQCQESNPCFYNPCHNSGRCISEGHGEYSCDC 1461
C NPC NG C + + C C G+ G C +++ C+PNPC+N QCY + Y C C Y+G C + D C+ +PC+ C F C C GF G C E + C +NPC+NGG+C++ + Y+C+C D +G C+ I+ C +PC NGG+C + + F C C + GK C DS C C+NGG CY+E +KC CP + G TC+ S C PNPC NGG C G + C C G C + CS C + CV G+ C C G+ G C ++ + C +PC G C D G C C G G +CQE + PC G I +G ++ DC
Sbjct: 490 ECASNPCLNGGHCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQCYNRASDYFCKCPEDYEGKNCSHLKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNVCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGWEGAYCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCDEATCNNGGTCYDEGDAFKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICAQNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGPD--CRININECQSSPCAFGATCVDEINGYRCVCPPGHSGAKCQEVSG---RPCITMGSVIPDG-AKWDDDC 880 HSP 3 Score: 166.007 bits (419), Expect = 4.605e-42 Identity = 172/591 (29.10%), Postives = 251/591 (42.47%), Query Frame = 1
Query: 457 CTCTMGYQGKHCDELNRCQPNPCKNAGQCYESGNGYHCACASGYKGDMCEF-MDRCQP-SPCQNGGHCIDH-EDDFHCTCLDGFLGRSCEVTDY-CGTNPCKNGGSCLNLDDRYECVCIDNAKGKQCQ-EIDHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCDEMSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCENSHAQCSS--CDTNAECV----RGNCVCMSGYNGDGHFCEVS-SRCHPNPCENGGICHDTDEGITCTCVHGFLGHQCQ------ESNPCFY----------------------NPCHNSGRCISEGHGEYSCDCTAPYGGSHC-EIHSMCTPNPCHNGGVCHVMRETQSCHCPTRFTGEYCEVDHCSRCDANAFCDNGDCR---------CDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTPCLSGSTCIDEPHGAYKCICREGYYGRNCDQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNGGSCHATDQHNYKCICLTGYEGFNCQEDICAQ 2079
C C G+QG +CD +C P+P G C E + C C + + G +C+ ++ C PC NGG C + D + C+C +G+ G +CE+ ++ C ++PC N GSC +EC C G C ID C + C++GG+C + +GF C CP ++TGK CQ + C PC N C Y C C + G CD + C N C D + Y+C C G HCE +C+S C C R C+C +G++G+ C++ C PNPC+NG C++ C C + G C + PC N C G+C S+ G+++CDC + G++C E + C NPC NGG C + C C + G YCE + + C N + G CR C G++G CD+ C +G TC DE A+KC+C G+ G C+ C P+PC NGG+C + ++ C+C G+EG ICAQ
Sbjct: 251 CRCQYGWQGLYCD---KCIPHPGCVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIAEHACLSDPCHNRGSCKETSLGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKPCVNAKSCKNLIASYYCDCLPGWMGQNCDININDCLGQCQNDASCRDLVNGYRCICPPGYAGDHCERDIDECASNPCLNGGHCQNEINRFQCLCPTGFSGN--LCQLDIDYCEPNPCQNGAQCYNRASDYFCKCPEDYEGKNCSHLKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNVCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGWEGAYCETN-INDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGK-------------------------TCHSRDSQCDEATCNNGGTCYDE-GDAFKCMCPGGWEGTTCN-------------------IARNSSCLPNPCHNGGTC-VVNGESFTCVCKEGWEG-----PICAQ 781 HSP 4 Score: 143.665 bits (361), Expect = 6.414e-35 Identity = 96/294 (32.65%), Postives = 145/294 (49.32%), Query Frame = 1
Query: 385 VKAHCLPNPCRNGASCTALN-------------------HG---------YSCTCTMGYQGKHCDE-LNRCQPNPCKNAGQCYESGNGYHCACASGYKGDMCEF-MDRCQPSPCQNGGHCIDHEDDFHCTCLDGFLGRSCEVTD-YCGTNPCKNGGSCLNLDDRYECVCIDNAKGKQCQEIDH--CHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCD-EMSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCE 1164
+K HC PC SCT HG ++C C G+ G +C E +N C+ NPC+N G C + N Y C C+ G++G CE ++ C +PC NGG C D +DF+C C +G+ G++C D C C NGG+C + D ++C+C +G C + C +PC NGG+C FTC C + G +C ++ + C+P+PC+N G C + D Y+C C + G C ++ C +PC+ G C D + Y+C C + G C+
Sbjct: 563 LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNVCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGWEGAYCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCDEATCNNGGTCYDEGDAFKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICAQNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCAFGATCVDEINGYRCVCPPGHSGAKCQ 856 HSP 5 Score: 92.4337 bits (228), Expect = 4.368e-19 Identity = 63/203 (31.03%), Postives = 95/203 (46.80%), Query Frame = 1
Query: 391 AHCLPNPCRNGASCTALNHGYSCTCTMGYQGKHCDEL--NRCQPNPCKNAGQCYESGNGYHCACASGYKGDMC-EFMDRCQPSPCQNGGHCIDHEDDFHCTCLDGFLGRSCEV-TDYCGTNPCKNGGSCLNLDDRYECVCIDNAKGKQCQEIDHCHNSPCTNGGSCTNTAHGF-----TCSCPGRYTGKVCQEHDSYCAPNPC 972
+ C C NG +C + C C G++G C+ + C PNPC N G C +G + C C G++G +C + + C P PC N G C+D ++ + C C GF G C + + C ++PC G +C++ + Y CVC G +CQE+ PC GS + TC C G++ +C P PC
Sbjct: 707 SQCDEATCNNGGTCYDEGDAFKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICAQNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCAFGATCVDEINGYRCVCPPGHSGAKCQEVS---GRPCITMGSVIPDGAKWDDDCNTCQC---LNGRIACSK-VWCGPRPC 902 The following BLAST results are available for this feature:
BLAST of TCONS_00049606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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