TCONS_00049602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049602
Unique NameTCONS_00049602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049602 ID=TCONS_00049602|Name=TCONS_00049602|organism=Clytia hemisphaerica|type=transcript|length=2515bp
CAAAAACATCACTTTTTTGGTGAAATtagtaaagtttttttatacaGAAG
AAAGTGAAAATCGTATTTCAATAAtgcacacttttttttataagaacaaa
ctacataaggcttcaatggtcaaaatattaagaacaagttaagaacactt
taagtcTTTGCAAACTCAGTAATCCCATTTTTAAGGACAATGGGGGAAAT
GATGGTGAAAAtatgaacatgttaagaacattgcTAGGCTTTAAAACTcg
gcttcaaaaatttgtattttagttacacgttttttcataagaacatccaa
aattttcgaagccgtcagatgttcttaactttttaagttttaagcctaaa
aatcttctttttttagtatttttgtccatttcccaAAGAAATccagtgtt
ttagagtctgcaaagccttaaaatgttcttaacttgttgttcttaacatt
ttggccatcgaagccttatgttcttatgtagtttattcttatcaaaaaaa
acgtgtattcaagaaaaatttgaaagaagataCAAATCACAGGGATGGAT
TGGCAGGTGTTTGGTATAATTTGGTTCAGTTTGCTAACAATTGTAACATC
TCTGAACAGTTATTCCTTCGAATTGCATTCTGAtcaaaaaattggtgaaa
agaTCATTCGATGTCTCTTTATTCGTCTGTCGGACGAAACTACCGGACAA
ACGCATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATATAATTT
TGCTATATTTGGCATCAAATTCGaaagAGATTTGAGCAATTATATGGACC
ATGATTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAA
AATGGCGGACAACCACGTGCTCGGACAGGTGATTTGAAAGGAACAAACCT
GAAGAGAATCAGTGGTAGTGAAAATTGGGGAAGTGAATTCTATTATACTA
TGACTGTTGATATTAAAGCAGTTTGAAAACTAACCACGTTGTTAGTTACC
ACTACAGACTGTATGTTTGTGTCCCTTTTGAAAAGTTCAGAAAAGCCGAA
AGGaaaatttactttcaaaattatacaaatttcctattagcagattcatg
aaaaaaagtCACTTGGGTTCAGTCCCGACACGAAGGACTCGTTTACTTTG
ATATATTGTGGAATCTGTCGATTCATCACTATTTTCAATTTGAACCTTGC
TATATCTTTAGTAGGAGCAATAATCTgtaacttacttacttacttatggC
AATTTGATTTATCTATTCAcaagaaaactttttctttaattAATATTTAA
TTTCCTTAAAAAGATGTAAATAGGACCAATGAAATATTACAAATTTAAGT
TTGAAAtatcaattttgataaaaatttggtaaaaatcccaaatatataca
cgtttttttattttaagaaacacacttttaagaaacatgaggctcagaat
gactcataatttaaaaaaaaaaactcatcaaAAATAAGTACTCTTATATT
TTAACTTTTCACTCGATTAAAAAAGTAGTCGACAGACAATGTAAGATATC
ATGTGTCTCTGTGTTAAAATTCTGAGATTCGCTTGTTCTTACAATTCTAC
GAAATCTGACAACAATGATCAATGAGTATGATTGTGTGGGGATTGTGTTC
TTCTTCAGAACACAATCATACCATCATGTAGCATCAAAATCGATAGTTCG
AATTTCTATTATTAGAATCTTTCTCTGAttccaagaaaaaaattggtctc
ttgaagatcgaatcagagagagagtcaactaaagaagtaataaaaagttt
tcaaaatgaaCAAGCTTAATTTTAAAGTATCACGCATTTCTCATCAGATC
CTATCGAAGAAGTATCTGACTTTGCATCATCATTCTCCCCTTCAGCCCCC
TTCTTTTTAGCGTGTACTGCATCCAAACCCATTTCAAATGCTTCTTGTAT
TCCTTCACCTGTTTTCGCTGACGTCAGCACATGACCAGTAGCTGCAATCT
CATCACGATATAATGTTTGTATAAAATCGTCCGGGTCTAAATCGTTAATG
GGAATCAAATCTTTTTGTGTTCCTATTAATATCACGGGAACGTCGTCCGT
ACGTTTTTCGCGTACGATATCGTAAACCTTGCGTGCTTCCTGATACGATT
TATCATCTCCAATTTGATACAACAATAGTATAAGTTGCGCACCTTGAATA
TGCAGGTCCCTCATTGCAGGGAATTGAAACGGCGACGCTAGATCACTAAT
TTGCAGCGTGTAGTGACGTGCCTGATGTTTGAAGCTACGCACGTGTAAAT
CTTCGACGGTAGTTTTGTAATTACCCGTAAATGCGTTGTTGACAAATCGT
TCTACAAAAGCCGTCTTCCCGCACTTCAGTGACCCCAATACAACGACTTT
GCGTTGCATTTTACGTGCTTTCGTAAAAGCGGTGCTACGTCGACGCGTTT
TTCCTTGTTTCTTCGTTTTACGTTTACGGCTGGTGTCCGCCATTTTTACG
TTGCTGATTTTCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_161:144617..148091-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049602 ID=TCONS_00049602|Name=TCONS_00049602|organism=Clytia hemisphaerica|type=transcript|length=3475bp|location=Sequence derived from alignment at scaffold_161:144617..148091- (Clytia hemisphaerica)
CAAAAACATCACTTTTTTGGTGAAATTAGTAAAGTTTTTTTATACAGAAG
AAAGTGAAAATCGTATTTCAATAATGCACACTTTTTTTTATAAGAACAAA
CTACATAAGGCTTCAATGGTCAAAATATTAAGAACAAGTTAAGAACACTT
TAAGTCTTTGCAAACTCAGTAATCCCATTTTTAAGGACAATGGGGGAAAT
GATGGTGAAAATATGAACATGTTAAGAACATTGCTAGGCTTTAAAACTCG
GCTTCAAAAATTTGTATTTTAGTTACACGTTTTTTCATAAGAACATCCAA
AATTTTCGAAGCCGTCAGATGTTCTTAACTTTTTAAGTTTTAAGCCTAAA
AATCTTCTTTTTTTAGTATTTTTGTCCATTTCCCAAAGAAATCCAGTGTT
TTAGAGTCTGCAAAGCCTTAAAATGTTCTTAACTTGTTGTTCTTAACATT
TTGGCCATCGAAGCCTTATGTTCTTATGTAGTTTATTCTTATCAAAAAAA
ACGTGTATTCAAGAAAAATTTGAAAGAAGATACAAATCACAGGGATGGAT
TGGCAGGTGTTTGGTATAATTTGGTTCAGTTTGCTAACAATTGGTGAGTG
CCTTTACGCAAAACGGATTTTTTTTTCCAGGATCATGTAATTCTTGTCAT
GAAAAAAGGAAAATTATTAGGTATCTTCATTGAGTATCTTTGGGAAATCA
CTCAGCGATTTCAATTCAACCTCTTAACATTTCAAGATGAAAGGGTTTGA
CCGATATGACCCCATACAGGGTCACCAATTCGAGAAAATATCCCTAATAA
GATAAAATCGAGTTTACCAGAAAGTACTAGCGTCAAAATTATTTGTCAAT
GGGAAAATCAAAGCGACAACATTTTCAGTCAAACTTTGTTTGTAATCTCT
AACCCAGCCTCTTCAAGCTGTAAAATGGTTCATATGTGTATTTGATATTG
TTTATATCTTTTTTTTCACCATAGTAACATCTCTGAACAGTTATTCCTTC
GAATTGCATTCTGATCAAAAAATTGGTGAAAAGATCATTCGATGTCTCTT
TATTCGTCTGTCGGACGAAACTACCGGACAAACGCATGACTTCTCACAAA
GATATTATCCACTTGTACGTGAATATAATTTTGCTATATTTGGCATCAAA
TTCGAAAGGTATTTTTTTTAAATAATTACCCGACTGTGGCCCTAAACAAG
GGAAAGTCCACCTTCACGTGTCGGGTGAAATGCTGCAATCTTTTAATTGT
TCACTCTGAAAAACTAAAATTTTTAAATTTCTACAAAAAAAACTATATAA
GAACATGAGGTTGGTTAAAATATTAAGAACAAGCTAAGGATTTATGAACT
CTAAAACGCCCAATTTTCCGGGAAATTGGACAAAAATGCTACAAAGGATT
GTCAAATTAAGGAACATCAGTAGGTTTCAAAAAAATTTTGGATTTTCTAA
TGAAAAAACGTGTGTATTGTATCTTTTCGAATTCACCCAAACACTGTATG
TAGGTCATGTTGAATTATTCTGTCCTGTTCTGAATTTCGAAAGTACAGTA
AGCTATTCTTATATCGTTGTTTCTTTAAAATTACTGGGTTTTTTTTTTCA
AAAATAAGCACTGCACCGCGGTTTAAATTTATTTTTCGCTATTTACGGGA
GGCGCTCATTTCGAAATATTGAGTTTTGATCCATTGGTTTTCCAACAAAG
TACAATTTAACCGCATTTTCCTTTAAAATATTTGCAGAGATTTGAGCAAT
TATATGGACCATGATTATGAAATTGAAGTGATCGTCAATCATGACTGGTG
TAGTTTTGAAAATGGCGGACAACCACGTGCTCGGACAGGTGATTTGAAAG
GAACAAACCTGAAGAGAATCAGTGGTAGTGAAAATTGGGGAAGTGAATTC
TATTATACTATGACTGTTGATATTAAAGCAGTTTGAAAACTAACCACGTT
GTTAGTTACCACTACAGACTGTATGTTTGTGTCCCTTTTGAAAAGTTCAG
AAAAGCCGAAAGGAAAATTTACTTTCAAAATTATACAAATTTCCTATTAG
CAGATTCATGAAAAAAAGTCACTTGGGTTCAGTCCCGACACGAAGGACTC
GTTTACTTTGATATATTGTGGAATCTGTCGATTCATCACTATTTTCAATT
TGAACCTTGCTATATCTTTAGTAGGAGCAATAATCTGTAACTTACTTACT
TACTTATGGCAATTTGATTTATCTATTCACAAGAAAACTTTTTCTTTAAT
TAATATTTAATTTCCTTAAAAAGATGTAAATAGGACCAATGAAATATTAC
AAATTTAAGTTTGAAATATCAATTTTGATAAAAATTTGGTAAAAATCCCA
AATATATACACGTTTTTTTATTTTAAGAAACACACTTTTAAGAAACATGA
GGCTCAGAATGACTCATAATTTAAAAAAAAAAACTCATCAAAAATAAGTA
CTCTTATATTTTAACTTTTCACTCGATTAAAAAAGTAGTCGACAGACAAT
GTAAGATATCATGTGTCTCTGTGTTAAAATTCTGAGATTCGCTTGTTCTT
ACAATTCTACGAAATCTGACAACAATGATCAATGAGTATGATTGTGTGGG
GATTGTGTTCTTCTTCAGAACACAATCATACCATCATGTAGCATCAAAAT
CGATAGTTCGAATTTCTATTATTAGAATCTTTCTCTGATTCCAAGAAAAA
AATTGGTCTCTTGAAGATCGAATCAGAGAGAGAGTCAACTAAAGAAGTAA
TAAAAAGTTTTCAAAATGAACAAGCTTAATTTTAAAGTATCACGCATTTC
TCATCAGATCCTATCGAAGAAGTATCTGACTTTGCATCATCATTCTCCCC
TTCAGCCCCCTTCTTTTTAGCGTGTACTGCATCCAAACCCATTTCAAATG
CTTCTTGTATTCCTTCACCTGTTTTCGCTGACGTCAGCACATGACCAGTA
GCTGCAATCTCATCACGATATAATGTTTGTATAAAATCGTCCGGGTCTAA
ATCGTTAATGGGAATCAAATCTTTTTGTGTTCCTATTAATATCACGGGAA
CGTCGTCCGTACGTTTTTCGCGTACGATATCGTAAACCTTGCGTGCTTCC
TGATACGATTTATCATCTCCAATTTGATACAACAATAGTATAAGTTGCGC
ACCTTGAATATGCAGGTCCCTCATTGCAGGGAATTGAAACGGCGACGCTA
GATCACTAATTTGCAGCGTGTAGTGACGTGCCTGATGTTTGAAGCTACGC
ACGTGTAAATCTTCGACGGTAGTTTTGTAATTACCCGTAAATGCGTTGTT
GACAAATCGTTCTACAAAAGCCGTCTTCCCGCACTTCAGTGACCCCAATA
CAACGACTTTGCGTTGCATTTTACGTGCTTTCGTAAAAGCGGTGCTACGT
CGACGCGTTTTTCCTTGTTTCTTCGTTTTACGTTTACGGCTGGTGTCCGC
CATTTTTACGTTGCTGATTTTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031448XLOC_031448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049602-exon-scaffold_161-1575043694:147499..148091TCONS_00049602-exon-scaffold_161-1575043694:147499..148091Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1575043694:146934..147117TCONS_00049602-exon-scaffold_161-1575043694:146934..147117Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1575043694:144617..146354TCONS_00049602-exon-scaffold_161-1575043694:144617..146354Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1510915933:147499..148091TCONS_00049602-exon-scaffold_161-1510915933:147499..148091Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1510915933:146934..147117TCONS_00049602-exon-scaffold_161-1510915933:146934..147117Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1510915933:144617..146354TCONS_00049602-exon-scaffold_161-1510915933:144617..146354Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1491911889:147499..148091TCONS_00049602-exon-scaffold_161-1491911889:147499..148091Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1491911889:146934..147117TCONS_00049602-exon-scaffold_161-1491911889:146934..147117Clytia hemisphaericaexon
TCONS_00049602-exon-scaffold_161-1491911889:144617..146354TCONS_00049602-exon-scaffold_161-1491911889:144617..146354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:144617..148091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0577533	0.108917	0.0739808	0.151043	0.853345	0.234485	3.84222	3.8979	13.1789	8.53501	5.24793	8.65217	4.24389	5.15276	2.01312	1.58382	0.520431	0.649023	3.67859	4.91157	0.363402	0.315599	0.114832	0.585406	0.415147	0.494325	0.327932	0.437799	0.128075	0.0516534
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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