|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049533 ID=TCONS_00049533|Name=TCONS_00049533|organism=Clytia hemisphaerica|type=transcript|length=1609bp
CTTGATTCgtaaaagtttatgctcgcgaaagtttgtacgcctaaaatata
tctaaagtttttcaatttctctAAATTAGCACTCATTATAAAGTCCTAGT
TAAATTTAAGACAGTGTCTAGTTTTGGTTTCTTATTCTTCAACAAATTCG
AAGGAACTATTAAATATTACACGAGAATCATCATTTAGTTAAAAAATGTA
CAATGACTATGAAAATTTAcacgaatagaccttttcataaattacgtcac
gaacatcaatTGCCTCGTATTCACACaaatttccatggtgatcataTCCC
TTGATGATGATAACccttgaatgatttttttataaatagaaagtagctgt
aataaaatccgctgggagttaatcaccatggcaataatttcaaaacgagg
caagtgatgttcgtgacgttatttatgaaaaggtgtattgtattatgttt
aaaaaatacATCATATTTTTAGACATTCTCAACCAAActaatttggagat
ttttgaaaaacatgtcGAGAAGAACACAACTTTAGAAACTAACACACAAA
ACGAAGAATCCGTTATTGAGAAAATGGTCGCTCCACCAATATCTGGTAAC
AATATCAtttaatttcaactttttccatAGTCAgaataattttaatattt
atcTACACCATTTCATAAAGCTACGTACGTTGGAAACCCTTTTCTTATTT
ACACAGGTTCTACACCCAAAAGGTCCGACGCCAATCCCAGAATCATCAGG
ACTGAACGATCTGGCGATCAATCCAATTCCGTCGCGGCTGAACAGTCTGT
TGTTAACTTTGAAATTACCACGGTTGAACGACCAAGCATTTCCAATACTG
AAAAGTCCGCTAAAAAATCCTTGGAGTTCAATTGTACGTCGTAAATCAAT
CTTTCTTTATATTCATCACGGGAGTTCTAGtcttaaaaaagttttgtttt
cgaGCATTATAATAGTTCCGTTGTAATGTATTTTATGTAGTAATCTTATT
TCTTTTCCACAATAGTCACTGAAAAAGATTTCAAGGCTGTTATCGACAAT
TTGGATACCACCCATAAAGTGTCAGACATGGACGAGAACAACCAAAACGT
CAGCACACACCATACTGCGAAACTTGCTGTTTTTGATAGAGTCACCCCAC
CTGACGAATTAAGCGGAACGCACCCAAAATACACCATTGACGAATTGGAT
AACAGTTCGTTTCTTTGTTCTCCAGCCGAACATGTAAAACAACGTCTGAA
CTATATTGTGTTAATATCGAGAATCTTGACTGAACACGTAAAATGCTTGA
AACCATTCCAGTCTGAAGTAATCCGTCACATCCGCCACGATCATTCtaaa
gaaatgagaaaaaagagtGACACTGTAAGTCTAAGATTATTCACAAGATT
ATTTATAAGGTTATTCACGTTTCAAATTCAAATCCTGGCTGggacaatag
acgatatcggatttagataaatgcaatgcattctggtttctagggactct
caaaggaattataatagatcaattaaatagattataattcctttgagagt
ccctagaaaccagaatgcattgcatttatctaaatccgatatcgtctatt
atccCCGAG Run BLAST on NCBI transcript from alignment at scaffold_160:52536..54532- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049533 ID=TCONS_00049533|Name=TCONS_00049533|organism=Clytia hemisphaerica|type=transcript|length=1997bp|location=Sequence derived from alignment at scaffold_160:52536..54532- (Clytia hemisphaerica)
CTTGATTCGTAAAAGTTTATGCTCGCGAAAGTTTGTACGCCTAAAATATA
TCTAAAGTTTTTCAATTTCTCTAAATTAGCACTCATTATAAAGTCCTAGT
TAAATTTAAGACAGTGTCTAGTTTTGGTTTCTTATTCTTCAACAAATTCG
AAGGAACTATTAAATATTACACGAGAATCATCATTTAGTTAAAAAATGTA
CAATGACTATGAAAATTTACACGAATAGACCTTTTCATAAATTACGTCAC
GAACATCAATTGCCTCGTATTCACACAAATTTCCATGGTGATCATATCCC
TTGATGATGATAACCCTTGAATGATTTTTTTATAAATAGAAAGTAGCTGT
AATAAAATCCGCTGGGAGTTAATCACCATGGCAATAATTTCAAAACGAGG
CAAGTGATGTTCGTGACGTTATTTATGAAAAGGTGTATTGTATTATGTTT
AAAAAATACATCATATTTTTAGACATTCTCAACCAAACTAATTTGGAGAT
TTTTGAAAAACATGTCGAGAAGAACACAACTTTAGGTAGGATACTACTTA
ATTTTCACGCTAATTTCTAGTGCTACTAATTGAATTTTGAGTGGAATATG
ATGAAACGTGAAACGTGATTATTAAAGGCAGTTTACATAACTTTAAAATG
ATTTAATTTTGCAAGGGCTAGATTTTGCAGATGACGCTTTTTGGGATAAT
ATTTTCACGATTTCGTGGATTTATACTGCCAAAATCTACATACTAGTTGT
TTATATATACTTTCTAACGTTTCTTTAACGTCAATAAGGACAATTTTAGA
AATTTGTTTATATGATTTTAGAAATGACGCCTTTTCAAATTAAAAATTCA
GCATGAATTCACGAAATCTGCGAAAGTTAGCCTTCACAAAATCTAATGCT
ATTAGCTTTATTGGTTCGTTTAGAAACTAACACACAAAACGAAGAATCCG
TTATTGAGAAAATGGTCGCTCCACCAATATCTGGTAACAATATCATTTAA
TTTCAACTTTTTCCATAGTCAGAATAATTTTAATATTTATCTACACCATT
TCATAAAGCTACGTACGTTGGAAACCCTTTTCTTATTTACACAGGTTCTA
CACCCAAAAGGTCCGACGCCAATCCCAGAATCATCAGGACTGAACGATCT
GGCGATCAATCCAATTCCGTCGCGGCTGAACAGTCTGTTGTTAACTTTGA
AATTACCACGGTTGAACGACCAAGCATTTCCAATACTGAAAAGTCCGCTA
AAAAATCCTTGGAGTTCAATTGTACGTCGTAAATCAATCTTTCTTTATAT
TCATCACGGGAGTTCTAGTCTTAAAAAAGTTTTGTTTTCGAGCATTATAA
TAGTTCCGTTGTAATGTATTTTATGTAGTAATCTTATTTCTTTTCCACAA
TAGTCACTGAAAAAGATTTCAAGGCTGTTATCGACAATTTGGATACCACC
CATAAAGTGTCAGACATGGACGAGAACAACCAAAACGTCAGCACACACCA
TACTGCGAAACTTGCTGTTTTTGATAGAGTCACCCCACCTGACGAATTAA
GCGGAACGCACCCAAAATACACCATTGACGAATTGGATAACAGTTCGTTT
CTTTGTTCTCCAGCCGAACATGTAAAACAACGTCTGAACTATATTGTGTT
AATATCGAGAATCTTGACTGAACACGTAAAATGCTTGAAACCATTCCAGT
CTGAAGTAATCCGTCACATCCGCCACGATCATTCTAAAGAAATGAGAAAA
AAGAGTGACACTGTAAGTCTAAGATTATTCACAAGATTATTTATAAGGTT
ATTCACGTTTCAAATTCAAATCCTGGCTGGGACAATAGACGATATCGGAT
TTAGATAAATGCAATGCATTCTGGTTTCTAGGGACTCTCAAAGGAATTAT
AATAGATCAATTAAATAGATTATAATTCCTTTGAGAGTCCCTAGAAACCA
GAATGCATTGCATTTATCTAAATCCGATATCGTCTATTATCCCCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049533-exon-scaffold_160-1575043694:53998..54532 | TCONS_00049533-exon-scaffold_160-1575043694:53998..54532 | Clytia hemisphaerica | exon |
| TCONS_00049533-exon-scaffold_160-1575043694:52536..53609 | TCONS_00049533-exon-scaffold_160-1575043694:52536..53609 | Clytia hemisphaerica | exon |
| TCONS_00049533-exon-scaffold_160-1510915933:53998..54532 | TCONS_00049533-exon-scaffold_160-1510915933:53998..54532 | Clytia hemisphaerica | exon |
| TCONS_00049533-exon-scaffold_160-1510915933:52536..53609 | TCONS_00049533-exon-scaffold_160-1510915933:52536..53609 | Clytia hemisphaerica | exon |
| TCONS_00049533-exon-scaffold_160-1491911889:53998..54532 | TCONS_00049533-exon-scaffold_160-1491911889:53998..54532 | Clytia hemisphaerica | exon |
| TCONS_00049533-exon-scaffold_160-1491911889:52536..53609 | TCONS_00049533-exon-scaffold_160-1491911889:52536..53609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:52536..54532 - |
Blast
The following BLAST results are available for this feature:
|
