TCONS_00049514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049514
Unique NameTCONS_00049514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049514 ID=TCONS_00049514|Name=TCONS_00049514|organism=Clytia hemisphaerica|type=transcript|length=252bp
attcatcctccaccccccatgaatggattttttctggaagagcccaatgt
acACTTGCTACTTATATAATTGATCTCCAGGGGGGGAGGCATTTTTAAAG
AATTCTGAAATCgatatttatataattttataatCATGGACTAGAATATG
CTATTATTATGTATATACAAAACACAATTAATATATGCACTTGAGTTTTG
TTGTTGTATTATTTCATATTGAATTTTTATGCGTCTTTTTGAAATTAATG
GA
Run BLAST on NCBI

transcript from alignment at scaffold_16:94964..95215

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049514 ID=TCONS_00049514|Name=TCONS_00049514|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at scaffold_16:94964..95215 (Clytia hemisphaerica)
TCCATTAATTTCAAAAAGACGCATAAAAATTCAATATGAAATAATACAAC
AACAAAACTCAAGTGCATATATTAATTGTGTTTTGTATATACATAATAAT
AGCATATTCTAGTCCATGattataaaattatataaatatcGATTTCAGAA
TTCTTTAAAAATGCCTCCCCCCCTGGAGATCAATTATATAAGTAGCAAGT
gtacattgggctcttccagaaaaaatccattcatggggggtggaggatga
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031409XLOC_031409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049514-exon-scaffold_16-1491911889:94964..95215TCONS_00049514-exon-scaffold_16-1491911889:94964..95215Clytia hemisphaericaexon
TCONS_00049514-exon-scaffold_16-1510915933:94964..95215TCONS_00049514-exon-scaffold_16-1510915933:94964..95215Clytia hemisphaericaexon
TCONS_00049514-exon-scaffold_16-1575043694:94964..95215TCONS_00049514-exon-scaffold_16-1575043694:94964..95215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:94964..95215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48567	0	0	0.82286	4.68594	1.5832	2.86509	2.68226	3.12986	1.55073	9.78367	1.24607	0.545514	2.5653	2.81856	2.48213	2.06768	1.98261	0.789648	1.65262	3.37289	3.15287	2.55515	2.92075	3.19019	0	1.01857	4.08407	7.42038	4.20011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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