TCONS_00049469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049469
Unique NameTCONS_00049469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049469 ID=TCONS_00049469|Name=TCONS_00049469|organism=Clytia hemisphaerica|type=transcript|length=388bp
CAATTTCGAGCTCCGTGATTCGTATAATATTGTTCTACAATTTAAAGAAT
TTGTACTGTTATAATGGACACTTTCCAGCAAGACCAATAAGTCTAGACAC
TGTCTAAAATATTCTGATTCACAGTCCTATATATACATATACTTCTTACA
TAGAgatttttcgctagaggatgagcagaaaaCTGGTGTTATTAGTGGCG
ATATTCGCAGGCAAGCAGAGATAATGTTCTCTGTCATGGGATGATTCTAC
AGAAAGAAATAGAGTACGCAAGGTTTCGTTCTCCTTCCACCGCAAGACAG
TGTTTTTGTCTTGATTTGCTTGCTTTTTTTAATGTAGTATTTGTTTTAAA
CAAACTCTATTCAATGATATATAGACTGCGTTGGTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_159:38927..39314

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049469 ID=TCONS_00049469|Name=TCONS_00049469|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at scaffold_159:38927..39314 (Clytia hemisphaerica)
ATTACCAACGCAGTCTATATATCATTGAATAGAGTTTGTTTAAAACAAAT
ACTACATTAAAAAAAGCAAGCAAATCAAGACAAAAACACTGTCTTGCGGT
GGAAGGAGAACGAAACCTTGCGTACTCTATTTCTTTCTGTAGAATCATCC
CATGACAGAGAACATTATCTCTGCTTGCCTGCGAATATCGCCACTAATAA
CACCAGttttctgctcatcctctagcgaaaaatcTCTATGTAAGAAGTAT
ATGTATATATAGGACTGTGAATCAGAATATTTTAGACAGTGTCTAGACTT
ATTGGTCTTGCTGGAAAGTGTCCATTATAACAGTACAAATTCTTTAAATT
GTAGAACAATATTATACGAATCACGGAGCTCGAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031386XLOC_031386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049469-exon-scaffold_159-1491911889:38927..39314TCONS_00049469-exon-scaffold_159-1491911889:38927..39314Clytia hemisphaericaexon
TCONS_00049469-exon-scaffold_159-1510915933:38927..39314TCONS_00049469-exon-scaffold_159-1510915933:38927..39314Clytia hemisphaericaexon
TCONS_00049469-exon-scaffold_159-1575043694:38927..39314TCONS_00049469-exon-scaffold_159-1575043694:38927..39314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:38927..39314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.386552	1.57088	0.878208	0.80185	0.211211	0	0	0.167019	0.41376	0.803211	0.528	0.395449	0	0	0.241555	0	0.152503	0	0	0	0.280412	0	0	0.425596	0.569752	0	0	0	0.224131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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