TCONS_00049421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049421
Unique NameTCONS_00049421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1083

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049421 ID=TCONS_00049421|Name=TCONS_00049421|organism=Clytia hemisphaerica|type=transcript|length=1083bp
ATCGAGAATGGAAAGTCTAGAAAGAGaaatggATTACAAAGTTGCTTCTT
ATTTGCTGTTATCCTGAATGAAATTTATCAATCGAATACATCAAGCCAAT
CCGGAAGTCTTGACGTTGGTTGGATCCACTTTTGTCATCGATTGTAGCGT
AGACCACACTGGTGGTCCTGAACCATCTGTCTATTGGTATAAGGATGATA
TTCCTCTACAAGAAAATAGCTTTAGAACCTTTGACGAACATAGATTAAAC
AAGACATTCAGACTTCGTTTAGAGAATGTGGATATTCCAGACAATGGCAA
ATATAAATGCACTGTCGATAATGTTTGCAGCAAGTCAATCACCAATACTG
TTAGTATTATTGTTAGAGAACAAAGGAGTGATGTGCCGATAATCTCAACA
TTTGAACCAGTGAACGCTACAAGGCTCGTGGGTGAGGAGTTGCAATTGAC
TTGTGGCGCTGATTTAGAAGATGGAGAGTTTACACCGTTTATTAAATGGG
TCCGTAAAACGAGTGAGAACGTGACATCCCATCTTAACCACACCTATAAC
AACACAACCTCTACAACCACCACCACAACGCAACCACCTTTTGGTATCAT
TCAAAAGAAATCAGACAAAATTCAGAATGTCCAAAATGTCCCAAAGATGA
ATACTGTATCTTATATAGAAGATGATGTCCGATACACAGTAACAGATCTG
AAGTTTGAACGCACTGCATCAAGTACGTTATCGTTAGAGGATCTTAAAGA
AGAAGATAGTGGTGTCTACACGTGTGTCATGTCCAATCTAAAAGGTGTTG
TGCGGAAATCATCTCATGTCACCATTAACCCTAGTAAGTACGCGTTCTTA
CAGATTGAAGAGCTATTTCTAATGTAAGTTTTCAAGGGGAAAATAAGAAT
TCACTATCCTAGGATGGCGGAAGAGGGCAACGTTACGGTTTATGCATTTG
CTAAATTCCTAAACTTCCCCTTTTTGacttatacatgtttttttcataag
cataacGTGTATAAGCATACCAAGAcctgaatttgtctaaaaaataagca
tattacaagcataTTTCTGAGCTTGCTTTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_159:31582..38158+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049421 ID=TCONS_00049421|Name=TCONS_00049421|organism=Clytia hemisphaerica|type=transcript|length=6577bp|location=Sequence derived from alignment at scaffold_159:31582..38158+ (Clytia hemisphaerica)
ATCGAGAATGGAAAGTCTAGAAAGAGGTAAgtgatttgttttgattcgat
TGCTGAGCAGCCGTGCCGGTGTGTtgctcttttttcttcttcagctTTTT
TTCTTGGGTATAAAATAGACCTGTTAATCAAAGCTTTGCACCCTGAACCC
CCTACCAGAGGTTAGTCCTGGACCCATTGGGGGGTACAGCACCTCCCCCT
AAACCTCCTACCTACAAGCAGAACTTTTTTTGGTGTAGACCTCAGTTCAA
ACAAATAACCGAAATAACAATTCAGCGTAGATTTTGCAatgatgctggag
tttttaattattcaacattacATATATATTCTGATTAGCATGATATGATG
CATGTTTGGGAGAATGcaacagtcttttgaataactaattactccagcag
aatttttttaatgaaaatgtcttACAATTGATTTGTCTTTAACACATCTA
TTACCTAGCGTGTATGTACAACCTAGGTACGAGATAATTTATCCCGTTTT
ACGTTACTCAAGCCAAATTCTGTttactaccgtaagttggtctaatgttg
acatccgtcttctaatttcgacatccttctttatagataggaataataag
aaggtcaaaatcactgatagactaaagatttttcctctctaatcgcgcta
atcaaagtcaatcagcgattccgaccttatcctcagtttctattgttcct
atctctaaagaaaggtgtcaaaattagaagacagatgtcgacattagacc
aacttacggtaaccTTAAAACAGACATCTTTGGTAATCTAGAAGGGCAAC
TTTTACCTCTGCCAATGCCAAACAGGGTAGTGTCTCCTTGGTCAGTATAT
CATGGCtctatcactttcaaagtggagccCTGGCCCATGGTTTCAATTCT
TATTCATGTTAAATGTCAAAGAGCGTTCTCTGTTGTCAAGTACAAGAATC
GACTGACATACTtacattttaatgaccagccaggtctttcatttgagggc
tatgcatgttagactccactgatgcaagttacccaatctcacacGGTACT
GAcactattttgttttgatgattcgtttttaacactgcaatgtttGAGTG
CAAGCTCCACATTTTTTCCATAGGGGCACAGACCACAGTTTAAATATTAT
TGTTAAAACGGGTGTCTTTATACTGTTCAGTAGGTATTGAAGTTATAAAC
TTGTCCAATGGATAGCAACAGTGGTTAGAGTGCCAATTATACATTCATTG
ATATAATACTTCCTCACAGCTACTTGCTTCAAATATACTCCGCCCTCCTA
AAAAGAGGAGGCATTTTTCCAAAAGGGGCGTTTATtgagaaatttttctc
aaaggAGAGGCATTTATCCAAgggtgtttaaaagaagggTTTACTCAAAG
TTATGGCATGCCATGTAGGTGTGTTTTTAAAACAGGGTCTGGACGCTCTT
GAGTGAAATAGTACAAATATTTGATTTAAATATTTAGAAATGGGTCAAAA
TTAAATTATACAATACAATTAGTAACCTTCAAACTATCAAAGGCAGGTTT
TAGGGGATAAAATGTTACATTTCATTTTGGAACGTTGCAATTTAGTAAAC
TTTGCCTAGATAACCTTGAGATGTCTAtgttttccttcttttttgtATTA
TGGAGATGTTTAAATTTGAATTGATATTGTAAGCTCCTGTATTCTAAACA
CAGGATAAATGGTTTGAAAGTTTAAGAAGTTAGATtgtggcaagctattt
tttaaGAGATCTTTCTTAAAGATGAGtcctttttgaattttacatCAAAA
CTTCCTCCTGTACCactgtaaaatgaaaattaaacaaaatgtTAGATTAT
CTTCCTAATAAATAttcgtaattttttttcttcagaaatggATTACAAAG
TTGCTTCTTATTTGCTGTTATCCTGTAAGTAAAACTTTTccatttaatat
ttttatattttttttacgaTAAAAACTTATCATGGTCAGAAAAGTCTCTA
TCCTTATGGCAGGGTTCGAATTAACGTATCGCGTTTCACGATTCGCGATG
CGTTTTTTGGAAATGTACgaagaaaaaattcagaaattcaacaaaatcgc
GATACAACATATAAAGAATTTTACAGCATTTTGAGCCTCCAAGCAAATAC
GATGGTTATTTGGCTTGTAAATTGGTCTTTAGAGTGGAGAATGCATCGTA
TATTGATAAAAACGCATCGTGAAACCTAAAAAATCGTTAATCCGATCACT
GTATGGGATCATTAATATGCCACATTAGAGCATAGAGCAAGTGATACTGC
CAGCTTAGcagaaaatcctttaaatttaaatgaaataaacatCTTTACTT
TATAAGCGACCATGTGGGAAGGcttttcttattcaaaattaTTGACCCAG
AATGAGGCATCACAAAAGATGGTTATATAATTTATATCTGGTCTAttatt
aattttgtatttttctataAAACCATAGGCATACTCATAAGTCATGTACA
TTCCAATAACTTAACTAACACAATTAACACCACAAACGAAACACCAACTA
ACCCTCCAACGTACACAATACCATTGATATTACAAAATACAACAAAGCTT
ACACCTATTACTATTACTAACGAGAAAATAACAACCAAATCTATGACAAC
TCCAATAACGACAACCAACAACACAACAACTaaaaccacaacaacaacag
caacaacaactaCTACTACAACCCCCACAACGACTACAACTATGAGACCT
TGTAGAAGTAATTCTTTTTATGAGCAGCCATAAAATAAAGGTCCCTCTAC
TTTGGGGAATTTCTTTAACTAGTTTGGGAAGGATTTTGTGAAGCTTGGAT
CTGTTTGATTTGTAAATTAGATCATCACCAAGAAGCCCCTTTAACCACAC
TACGCCTTTCTTTGGGAGTCTATTTATTCTGGTTTTTAAGATTCAATTTG
TTAAAACTTCTAGGAATGAAATTTATCAATCGAATACATCAAGCCAATCC
GGAAGTCTTGACGTTGGTTGGATCCACTTTTGTCATCGATTGTAGCGTAG
ACCACACTGGTGGTCCTGAACCATCTGTCTATTGGTATAAGGATGATATT
CCTCTACAAGAAAATAGCTTTAGGTAATAAATCTTTAAACATAAGAGCTT
CAACTCACAAGAACATTTTACAATGATATTACTGTTTTAATCAGTTAAAG
TAATAGAACTTACAATTTCGAAAGTCTGTTTTAATAGCAGATGTGACCTT
TTAAAGTTTTATATCTTTAATATCTCCTGGCCTCTTCAAGGATTGGCACA
ATCGATTAATAATTCAAATTGTTGGGGTAACAAATTATATAACCACGCCC
GTTACACTACATTATCGTTCCTTTCCTATTCCTTTACTATTTTCCTTTAG
AACCTTTGACGAACATAGATTAAACAAGACATTCAGACTTCGTTTAGAGA
ATGTGGATATTCCAGACAATGGCAAATATAAATGCACTGTCGATAATGTT
TGCAGCAAGTCAATCACCAATACTGTTAGTATTATTGTTAGAGGTATGTC
TGCCTTTTGAAGTATTTGTTTCTACAGAAATTTTGGTCTGGAAGTTCAGT
TTGTTTTTCAAGTTAGTTTGACTTACATTATTTTATATATTGTATCACAT
CAGCACAGCATATGTATGAAGAAATTAACCAACAACGATTTTTGAAATTG
ACAACTTATTATTTGCGTTCGATAGTTTCAAAGAAAATCGAACTGTATTC
CAGAACACAAATATCTGCTTATAGCGGTTTTTAAGGCTTCGTGTGGTTGC
AATATTaagatttgttttcttttccttcCCTAGAACAAAGGAGTGATGTG
CCGATAATCTCAACATTTGAACCAGTGAACGCTACAAGGCTCGTGGGTGA
GGAGTTGCAATTGACTTGTGGCGCTGATTTAGAAGATGGTAATATTGTTT
TTTGTATTatgttcaaaaattgaaatatttcagtATGTTAGACAACTAAA
ATTTAAGAGAAAGTTGTCTAtggtgaaaaaaattgaatgtcaTTATTATT
ATCCTCTTAACAACCCTTAGAGGCGTAGTCGGTTTTTGATGGGTACTGGT
AATTCCGTTTTCAAAGAATGATGAAGTCAAGTAAGGATGAAAGATTTCAA
GCTAATTAAGAAAATGttatgaataaatattttattaaagAATTCATTAC
TACCaattcacaggaaaaaattttcgatttccaaggttggaaatttcaag
ttttcttagttggaaaaaagataaaatccaatggaaaatccaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaatcgctcaaa
tttccaaccttcaattataaaaccaaaatttccaacccaaaaatattgaa
tttccaaccttggaaatcgaaatttttttcctgtgattaCTGCGAAGAAG
CTTAAAAGAACATCGTGTCAACGCCTGGAATCCTCtacaatattgaaaaa
ataagactGGAACATCTTTTCATTTCCACAGGAGAGTTTACACCGTTTAT
TAAATGGGTCCGTAAAACGAGTGAGAACGTGACATCCCATCTTAACCACA
CCTATAACAACACAACCTCTACAACCACCACCACAACGCAACCACCTTTT
GGTATCATTCAAAAGAAATCAGACAAAATTCAGAATGTCCAAAATGTCCC
AAAGATGAATACTGTATCTTATATAGAAGATGGTATGTTCTTTGTTTTCG
TATTCGCTCTTACGTAACCTTAGGAGTAGTTGAATATCCGACTAATAATT
CAacaaagtgctctataccatATTGGTAGAGCAGTATACCATACCAGTCA
AGAATAGAGTTTCATACCTtttcaggcagtcttcagtcagaATCAAAGGT
TGGCTGATATAACCTTAgtagtaaataaaaaaagatcaaaaaatatttag
cgGCCATTTTCTTTTTAGATGTCCGATACACAGTAACAGATCTGAAGTTT
GAACGCACTGCATCAAGTACGTTATCGTTAGAGGATCTTAAAGAAGAAGA
TAGTGGTGTCTACACGTGTGTCATGTCCAATCTAAAAGGTGTTGTGCGGA
AATCATCTCATGTCACCATTAACCCTAGTAAGTACGCGTTCTTACAGATT
GAAGAGCTATTTCTAATGTAAGTTTTCAAGGGGAAAATAAGAATTCACTA
TCCTAGGATGGCGGAAGAGGGCAACGTTACGGTTTATGCATTTGCTAAAT
TCCTAAACTTCCCCTTTTTGacttatacatgtttttttcataagcataac
GTGTATAAGCATACCAAGAcctgaatttgtctaaaaaataagcatattac
aagcataTTTCTGAGCTTGCTTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031372XLOC_031372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049421-exon-scaffold_159-1491911889:31582..31607TCONS_00049421-exon-scaffold_159-1491911889:31582..31607Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1510915933:31582..31607TCONS_00049421-exon-scaffold_159-1510915933:31582..31607Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1575043694:31582..31607TCONS_00049421-exon-scaffold_159-1575043694:31582..31607Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1491911889:33467..33505TCONS_00049421-exon-scaffold_159-1491911889:33467..33505Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1510915933:33467..33505TCONS_00049421-exon-scaffold_159-1510915933:33467..33505Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1575043694:33467..33505TCONS_00049421-exon-scaffold_159-1575043694:33467..33505Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1491911889:34545..34704TCONS_00049421-exon-scaffold_159-1491911889:34545..34704Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1510915933:34545..34704TCONS_00049421-exon-scaffold_159-1510915933:34545..34704Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1575043694:34545..34704TCONS_00049421-exon-scaffold_159-1575043694:34545..34704Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1491911889:34982..35124TCONS_00049421-exon-scaffold_159-1491911889:34982..35124Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1510915933:34982..35124TCONS_00049421-exon-scaffold_159-1510915933:34982..35124Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1575043694:34982..35124TCONS_00049421-exon-scaffold_159-1575043694:34982..35124Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1491911889:35415..35519TCONS_00049421-exon-scaffold_159-1491911889:35415..35519Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1510915933:35415..35519TCONS_00049421-exon-scaffold_159-1510915933:35415..35519Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1575043694:35415..35519TCONS_00049421-exon-scaffold_159-1575043694:35415..35519Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1491911889:37313..37513TCONS_00049421-exon-scaffold_159-1491911889:37313..37513Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1510915933:37313..37513TCONS_00049421-exon-scaffold_159-1510915933:37313..37513Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1575043694:37313..37513TCONS_00049421-exon-scaffold_159-1575043694:37313..37513Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1491911889:37750..38158TCONS_00049421-exon-scaffold_159-1491911889:37750..38158Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1510915933:37750..38158TCONS_00049421-exon-scaffold_159-1510915933:37750..38158Clytia hemisphaericaexon
TCONS_00049421-exon-scaffold_159-1575043694:37750..38158TCONS_00049421-exon-scaffold_159-1575043694:37750..38158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:31582..38158 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.668383	0.792579	1.02942	1.17819	0.281508	1.44168	3.37506	5.23017	0.337817	0.995495	0	2.31926	0.272355	0.64863	0	0.366846	0	0	0.288009	0.282294	2.94794	2.8028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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