|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049308 ID=TCONS_00049308|Name=TCONS_00049308|organism=Clytia hemisphaerica|type=transcript|length=3521bpRun BLAST on NCBI protein sequence of TCONS_00049308-protein >TCONS_00049308-protein ID=TCONS_00049308-protein|Name=TCONS_00049308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp MIRGFGLLKSSSTRHVLKDVYPTNRILSSVYLSTSSANPLPAPSTNKARQRun BLAST on NCBI transcript from alignment at scaffold_154:707559..723500- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049308 ID=TCONS_00049308|Name=TCONS_00049308|organism=Clytia hemisphaerica|type=transcript|length=15942bp|location=Sequence derived from alignment at scaffold_154:707559..723500- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_154:707559..723500- >TCONS_00049308 ID=TCONS_00049308|Name=TCONS_00049308|organism=Clytia hemisphaerica|type=CDS|length=16863bp|location=Sequence derived from alignment at scaffold_154:707559..723500- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049308 vs. Swiss-Prot (Human)
Match: MICU1 (Calcium uptake protein 1, mitochondrial OS=Homo sapiens GN=MICU1 PE=1 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 4.766e-108 Identity = 189/381 (49.61%), Postives = 265/381 (69.55%), Query Frame = 1
Query: 670 KSQAGFRERKIIEYENRIRSYSTPDKIFRYFATLQ---EAYNSTIYMVPEDFVRALTPDTMQP--LGXXXXXXXXXXXXXXXPYESVHFGKDSVFHAFGDGGLISFSDYIFLLTVLGTTTRQIKIAFKMFDLNGDGEVTLEEFKKVRSLFLSMTTTGSRHRDRNTTGNVLSQDVNTGLATHFFGENGEDKLTVDEFIEFKTRLQEEVMFLEFCSYNPRQGKITEIQFMEILLIHANFGNQKHQKVVKRFKKAFEMEDXXXXXXXXXXXTFQDYLDFFSFLRSLRDVEMALSFHTVAGQAINKETFKQVAKLVAGVDLSDHIIDVVFCIFDENQDDHLSNKEFIAVMKDKMFRGLNKPKDTGFTRLLSAIMTCAKSNIVEAW 1797
K ++GFR+RK++EYENRIR+YSTPDKIFRYFATL+ E + ++M PEDFVR++TP+ QP LGL K+FD KKI + S+F+ G+ GLISFSDYIFL TVL T R +IAFKMFDLNGDGEV +EEF++V+S+ S T+ G RHRDR TTGN L + + L T+FFG + + KLT+ F+EF+ +LQ +V+ LEF ++P G+ITE QF +LL ++ ++K + ++ KK F+ E G+TFQ+ +FF+FL+++ DV+ ALSF+ +AG +++K T +QVA+ VA V+LSDH+ DVVF +FD + + LSNKEF+++MK ++ RGL KPKD GFTRL+ A+ CA+ AW
Sbjct: 101 KKRSGFRDRKVMEYENRIRAYSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFDGKKISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHRDRPTTGNTLKSGLCSALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFK---------EGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCAQET---AW 469 The following BLAST results are available for this feature:
BLAST of TCONS_00049308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.