TCONS_00049281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049281
Unique NameTCONS_00049281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049281 ID=TCONS_00049281|Name=TCONS_00049281|organism=Clytia hemisphaerica|type=transcript|length=2653bp
CGCCAATCTAACAATAACGACCGTCACTCTAACAACAACATGAACAACAA
AGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAATCTAACA
ACAACATGAACAACAACGACCGTCAATCTAACAATAACGACCGTCACTCT
AACAACAACATGAACAACAAAGTCCGTCAATCTGACAATAACATGAACAA
CAACGACCGTCAATCTAACAATAACGACCGTCACTCTAACAACAACATGA
ACAACAAAGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAA
TCTAACAATAACATGAACAACAACGACCGTCAATCTAACAACAACATGAA
CAACAACGACCGTCAATCTAACAACAACATGAACAACAACGACCGTCAAT
CTAACAATAACATGAACAACAACGACCGTCAATCTAGCAATAACGACCGT
CAATCTAACAACAACGACCGTCAATCTAACAACAACATGAACAACAACAA
TCGTCACTCTAGCAACAACATGAACAACAACGACCGTCACTCTAGCAACA
ATATGAACAACAACGACCGTCAATCTAACAATAACATGAACAACAACGAC
CGTCAATCCAACAATAACAACCGTCAATCTAACAACAACATGAACAACAA
CGACCGTCACTCTAGCAACAACATGAACAACAACGACCGACAATCTAACA
ACCACATGAACAACAACGACCGTCAATCTAACAATAACATGAACAACAAC
GACCGTCAATCTAACAATAACAACCGTCAATCTAACAACAACATGATCAA
TAACAACCGTCAATCTAACAACAACATGAACAACAACGACCGTCAATCTA
ACAACAACGACCGTCAATCTAACAACAACGACCGTCActctaacaacaac
aacaacaacgatcAAATATCGCATAATAGCAATGTAAACGCTCGTGAATC
TAAAACCGAAGTTGCAAGCTTAAGAGACCGATCTGAAACCACTAACAAAG
ATAGACAACGAAACAACTACAACTACAAAAACTTCAACAACAGACGATTT
AACAATCTCAAAAAATACAACCATCAAAACAAACTAGAGTGTGACCACGA
TCATATGCGATTCACCTTTAAACCATCATTTGGTCGGGATATCGAGATTG
AAAGAGTGACATTGAGCAGTGATTCATGTAGGATGAGATACGATCGTATG
AGAGATGAATACATGACTGTGACAAGCTATGAAGAATGTGGCACGGGAAT
GGAAGAGGAGGAGGAGAACAtcgtttttatgAACGTTGCACGCGTCATCT
ACCGCAACACTACCATTAAAAACGCCTTGATTGAACGTAAGAACATCTAC
AATATCGGATTAGAATGTCGATTGAAGAAAACTGCAGTCAACACGATCAA
GGGAAACAGAGAAGATGATTCAGGAATGATCGTCAGTCCACAATCCTACG
AAATCAATGATTATGCTAGAAGTACTGGAAACTTCAGAATTGATTTCCAA
GTTTACAAATCAAACCAATACAACCACTCATACGGTGTTGAGGAATTCCC
AATCTACTTGGGAATCAGTAACCGCATCTACTTTGAACTCTCCATGGATC
AACCAGACTTGACACTCATTCCACATGAATGTTACGCCACTGCTGACCGA
AGTTACCTATCCAGACCGCGATATCACATCATTGAAGAAAGATGTCCAAA
AGACGAGACGTACGTCGAACACATGCAAGATGAGAATACCTACCGATTCA
GTATCCAAGCTTTCACATTCAAGGACGGACAAGACAGTATTTATGTTCAC
TGTAAANAATACCTACCGATTCAGTATCCAAGCTTTCACATTCAAGGACG
GACAAGACAGCATTTATGTTCACTGTAAATCATACGTCTGCCAAAACACA
AGCAACGAGCTGTGCAACTTTGGATGCAACAAAAATGGAAACAGCAACGA
CCGTTTCCAAAACAACAACATGAACAGCAACGACCGTTTCCAAAACAACA
ACATGAACCGCAACGACCCTAACAACTTCCTTTTAAGGAGATCAAGAAGA
AGCGTAGAAGCAAATACAATTGGACAAATTCATGGTTTCATGACATCCAC
ATTAGAAATCAAAGTCACAACCACCGATAAGAAAGTCGCAGCCAGAATCG
AAGTTACCGAGACATCCGAAGATAAATCCATCCTGAGCTATTTGCCATAC
CTCCAAATCCCATTGGTTTTACTAGTTGTCGGTGCCGTAGTAATGGCATG
GAGATGTATCAAACGAAATAGAGCCGCATCTAAAGAAGTGAATTGAGAGA
AAAAACTATTTGTTTACGATGTAAACTAAACTTTAACACAGGAGGATCTT
GTTTAATGAAAATCGATCCTTATTGAAGATGGTCCAAGTCCAGCTAAATT
GAAGGCATCTATAATGGTCTAATTTTAGCCAATCGTTTTCAGAAATTTAA
CCGACTTAGATGAATAAAATTTATAGTATTTTACAAAAGTTTACCAGTTT
GTTAAAATTAGATAGTTTTTGTGTTTCTTTGAAATGTATTAAAGTGCCCA
TATTTATTTAGAAATATCTAGAAAcatatattttgttttgaatgaaatat
tatgaaaaaattAATCTATACCTTTAGAGATTTTTCTCAAACTTTTTTGT
TGA
Run BLAST on NCBI

transcript from alignment at scaffold_154:521349..527520-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049281 ID=TCONS_00049281|Name=TCONS_00049281|organism=Clytia hemisphaerica|type=transcript|length=6172bp|location=Sequence derived from alignment at scaffold_154:521349..527520- (Clytia hemisphaerica)
CGCCAATCTAACAATAACGACCGTCACTCTAACAACAACATGAACAACAA
AGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAATCTAACA
ACAACATGAACAACAACGACCGTCAATCTAACAATAACGACCGTCACTCT
AACAACAACATGAACAACAAAGTCCGTCAATCTGACAATAACATGAACAA
CAACGACCGTCAATCTAACAATAACGACCGTCACTCTAACAACAACATGA
ACAACAAAGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAA
TCTAACAATAACATGAACAACAACGACCGTCAATCTAACAACAACATGAA
CAACAACGACCGTCAATCTAACAACAACATGAACAACAACGACCGTCAAT
CTAACAATAACATGAACAACAACGACCGTCAATCTAGCAATAACATGAAC
AACAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACAACAACAT
GAACAACATCGACCGTCAATTTGACAATAACGACCGTCAATCTAACAACA
ACATGAACAACAACGACCGTCAATCTAACAACAACATAAACAACAAAGTC
CGTCAATCTAACAACAACGTGAACAACAACGACCGTCACTCTAGCAACAA
CATGAACAACAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACA
ACAACATGAACAACAACGACCGTCAATCTATCAATAACGACCGTCACTCT
AACAATAACATGAACAACAACGACCGTCACTCTAGCAACAACATGAACAA
AAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACAACAACATGA
ACAACAACGACCGTCACTCTAGCAACAACATGAACAACAACGACCGACAA
TCTAACAACCACATGAACAACAACGACCGTCAATCTAACAACAACATGAA
CAACAACGACCGTCACTCTAGCAACAACATGAACAACAACGACCGACAAT
CTAACAACCACATGAACAACAACGACCGTCAATCCAACAATAACAACCGT
CAATCTAACAACAACATGAACAAAAACGACCGTCAATCCAACAATAACGA
CCGTCAATCTAACAACAACATGAACAACAACAATCGTCACTCTAGCAACA
ACATGAACAACAACGACCGTCACTCTAGCAACAATATGAACAACAACGAC
CGTCAATCTAACAATAACATGAACAACAACGACCGTCAATCCAACAATAA
CAACCGTCAATCTAACAACAACATGAACAACAACGACCGTCACTCTAGCA
ACAACATGAACAACAACGACCGACAATCTAACAACCACATGAACAACAAC
GACCGTCAATCTAACAATAACATGAACAACAACGACCGTCAATCTAACAA
TAACAACCGTCAATCTAACAACAACATGATCAATAACAACCGTCAATCTA
ACAACAACATGAACAACAACGACCGTCAATCTAACAACAACGACCGTCAA
TCTAACAACAACGACCGTCACTCTAACAACAACAACAACAACGATCAAAT
ATCGCATAATAGCAATGTAAACGCTCGTGAATCTAAAACCGAAGTTGCAA
GCTTAAGAGACCGATCTGAAACCACTAACAAAGATAGACAACGAAACAAC
TACAACTACAAAAACTTCAACAACAGACGATTTAACAATCTCAAAAAATA
CAACCATCAAAACAAACTAGAGTGTGACCACGATCATATGCGATTCACCT
TTAAACCATCATTTGGTCGGGATATCGAGATTGAAAGAGTGACATTGAGC
AGTGATTCATGTAGGATGAGATACGATCGTATGAGAGATGAATACATGAC
TGTGACAAGCTATGAAGAATGTGGCACGGGAATGGAAGAGGAGGAGGAGA
ACATCGTTTTTATGGTAAGTTTTATAGAAATTACATTTGATTTTCATAGA
TATTTTTTATGATATAGAAAGAAAGGGCAGTTCTGTGTTGACAAAGCAGA
ACTTTCAACGGCACTAAAAACTAGATCTAGTGCTCGATGCATTGCACCAG
TTACCATTAGGGTATCACTTTCAAAAAAACTCCGATCAAAGATTTTGCTT
GGCTAAGATTGAGAAGCTGCTTCCAGGGTTTAAATACAGCTCAGTGACTG
CAATATTCCTTCATTCTAGAATGTTGCAGGACGTGTAGGACGTAGGGTCT
ACGCCAATTTGCTTAGTTTCATTTAATTGTAGCCTCAGGATGCGGTGCAA
TGAGAAAAAATCTTCCATGTAAATTCATTAACTGTCTCCTAAAAAGCCGA
CCACGCCGCTATGGGTTGGTAGGTGTATTTGAACTATATATGCGTGTAAA
GGACTATTCCTTCATTCTAGAACGTTGCACGCGTCATCTACCGCAACACT
ACCATTAAAAACGCCTTGATTGAACGTAAGAACATCTACAATATCGGATT
AGAATGTCGATTGAAGAAAACTGCAGTCAACACGATCAAGGGAAACAGAG
AAGATGATTCAGGAATGATCGTCAGTCCACAATCCTACGAAATCAATGAT
TATGCTAGTAAGTGGTATTTGTGACTCTATCTCTATATGTCACGACAAAA
TCTATTAGGGGGGGTGTTAAAATGTCAGACATGACGTTTAGTGTCGTGGT
GGTACGCCCAAAAAGAACGAATCCAAGAACGAGGTTCAATGAAATGCTTC
TAATACTACCCAGCTGGCACACAACGTTGTTTCAACGTTTATCTAACGTT
CACAACATCCATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGTCA
GCTGGGTAGTCAAATGACTATAGTCTTACGGCTTGGGGACACGAAAAGTC
TTTTTCGCGTTGGTGCAATGCAACATGCTCTATCCCACTAACACAAGAAA
ATGCGTGTCCCATGGTTTCTTTTTTTGTTTCATGGGACAAAAAGTGAGGG
AAATACCCAAAAGACACAGAGATTTTGTCCCAGAGACAAAAGTGAGATAT
CACTTTTATTGGTAGAAAGAAAAATGGGTAGATACACGAGAAAGCTTTTC
AGGTTGGTGACATGGAGCATGTCGCATTGCACCAACGTGAAAAAAACTTC
TCGTGTCTCCCCAAGCCTTTACGTCAAATTTTGGATTTTTTTTATCATTT
TGTCATTTTGTCATCTACAGCAGATCAAAGGCTTTAATTCCCGATTTCTA
TTTTCAGGAAGTACTGGAAACTTCAGAATTGATTTCCAAGTTTACAAATC
AAACCAATACAACCACTCATACGGTGTTGAGGAATTCCCAATCTACTTGG
GAATCAGTAACCGCATCTACTTTGAACTCTCCATGGATCAACCAGACTTG
ACACTCATTCCACATGAATGTTACGCCACTGCTGACCGAAGTTACCTATC
CAGACCGCGATATCACATCATTGAAGAAAGGTGAGAAATTGTGATTTTGC
TAAATTACTCTTTTTATAAGAACAAACTATATAAGAACATAAAAGCTTCG
ATGGCCAAAATATTAAGGACATGTTATGCACATTTCAAGGCTTTGTGGAC
TCTGAAACACCCGATTTCTTAGGAAAATGGACAAGATTAACCCCAAAATG
GTGAAAATAAAAATATTTTAGGCTTAAAACTCAAAAAGTAAAGAACATCC
GAAAGCTTCGAAAATGTGGGGTTTTCTTATATAAAAGAACGTTTATGAAC
AGGCACGACACATAGAATAACAACAGGTACATCTGAAGTACCAGAATTAT
TGCGATCAAGCCATGATACTTTTGTTTTTCTTGCACCTATACTTATAACG
AAATTTTGACTTTCAAATTGGTATCACGGCTTTATCATCGAAGAAGGGGC
AGCGTTAAAATTACAACCAAAAACTTGCACACACCGTTGTTTCAACGTTC
ATCTTATGTTATATGGACGTTGTGAACATTAGATAAACGTTGAAATAACG
TTGTGTGCAGCTGGGAAACTGTTGACCATACATATAATTTCTGTTAGATG
GCGGGTGGGTAAGAAAAACTTATAAACACAGCAGATTCTATACAATTTGA
CCTCATTTTCGTTCCCCTTAAAATACACTCGTAAAGATAATTCCCTAATC
CCAACATCTTTATAGAATTCGAAAGAATTAAATTTTCTGCTTATGGTTAA
GATTAGCGAAACAGTGACCTTTCTGGTCTTANCATCTTCAGAATTCGGAA
GAATTAAATTTTCTGCTTAGGGTTAAGATTAGCGAAACAGTGACCTTTCT
AGTCTAAAATCTTTAGATGTCCAAAAGACGAGACGTACGTCGAACACATG
CAAGATGAGAATACCTACCGATTCAGTATCCAAGCTTTCACATTCAAGGA
CGGACAAGACAGTATTTATGTTCACTGTAAANAATACCTACCGATTCAGT
ATCCAAGCTTTCACATTCAAGGACGGACAAGACAGCATTTATGTTCACTG
TAAATCATACGTCTGCCAAAACACAAGCAACGAGCTGTGCAACTTTGGAT
GCAACAAAAATGGAAACAGCAACGACCGTTTCCAAAACAACAACATGAAC
AGCAACGACCGTTTCCAAAACAACAACATGAACAGCAACGACCGTTTCCA
AAACAATAATATGAACCGCAACGACCGTTTCCAAAACAATAACATGAACA
GCAACGACCGTTTCCAAAACAATAACATGAACAGCAACGACCGTTTCCAA
AATAACAACAGGAACAGCAACGACCGTTTCCAAAATAACAACAGAAACAG
CAACGACCGTTTCCAAAACAACAACATGAACCGCAACGACCCTAACAACT
TCCTTTTAAGGAGATCAAGAAGAAGCGTAGAAGCAAATACAATTGGACAA
ATTCATGGTTTCATGACATCCACATTAGAAATCAAAGTCACAACCACCGG
TAAAAATCTTATTCTTTTAACTAAACATTAGGGTTTTGTGTGTGAACGGA
AATTAGCCAGGAAGCCATTCGGAATATCAGATAACAGAGCAGAACGAACC
AAATAGCTTTGCACATGATGTCACTGATAAGAAGGCACACGACTTTTAAC
CCAAAAAGTTACCAAAAAATAATTTTATCCAAGCAATACCGATTTCTTAT
TCTTTTTTGTTATCTTGAATCACCGACCATGGGAAATGCGAATTGTCAGG
AGGATTTGAGCAAAATCTTATTCAATACTCTCGGGTACCTAATAGCCGGG
GGGTTGGAATAAGCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAATAAAAAT
GTCCTGGGTGGAAAATTTTTGAAAAGGAGGCTAATACAGCTGAATTAGGA
CAAAAAAGGGAACTTTCAAAAACATTTTTCCAAAAATTAATAAGCGGGGG
AGTTGGAATAAGAATGTCCTGGGTGGAAAATTTTCCAGTTCTGTGAGCCT
TACAAAAAATTAACCCAAAAATTAAAAAGAAGCATCTTACAAGCATTTCA
ATTGGATGATCCACATTTTCAACTTTTATATTCCTTCATTTTTAGATAAG
AAAGTCGCAGCCAGAATCGAAGTTACCGAGACATCCGAAGATAAATCCAT
CCTGAGCTATTTGCCATACCTCCAAATCCCATTGGTTTTACTAGTTGTCG
GTGCCGTAGTAATGGCATGGAGATGTATCAAACGAAATAGAGCCGCATCT
AAAGAAGTGAATTGAGAGAAAAAACTATTTGTTTACGATGTAAACTAAAC
TTTAACACAGGAGGATCTTGTTTAATGAAAATCGATCCTTATTGAAGATG
GTCCAAGTCCAGCTAAATTGAAGGCATCTATAATGGTCTAATTTTAGCCA
ATCGTTTTCAGAAATTTAACCGACTTAGATGAATAAAATTTATAGTATTT
TACAAAAGTTTACCAGTTTGTTAAAATTAGATAGTTTTTGTGTTTCTTTG
AAATGTATTAAAGTGCCCATATTTATTTAGAAATATCTAGAAACATATAT
TTTGTTTTGAATGAAATATTATGAAAAAATTAATCTATACCTTTAGAGAT
TTTTCTCAAACTTTTTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031278XLOC_031278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049281-exon-scaffold_154-1575043694:527077..527520TCONS_00049281-exon-scaffold_154-1575043694:527077..527520Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1575043694:526936..526956TCONS_00049281-exon-scaffold_154-1575043694:526936..526956Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1575043694:525607..526422TCONS_00049281-exon-scaffold_154-1575043694:525607..526422Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1575043694:524964..525150TCONS_00049281-exon-scaffold_154-1575043694:524964..525150Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1575043694:524091..524313TCONS_00049281-exon-scaffold_154-1575043694:524091..524313Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1575043694:522944..523254TCONS_00049281-exon-scaffold_154-1575043694:522944..523254Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1575043694:522622..522745TCONS_00049281-exon-scaffold_154-1575043694:522622..522745Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1575043694:521349..521875TCONS_00049281-exon-scaffold_154-1575043694:521349..521875Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:527077..527520TCONS_00049281-exon-scaffold_154-1510915933:527077..527520Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:526936..526956TCONS_00049281-exon-scaffold_154-1510915933:526936..526956Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:525607..526422TCONS_00049281-exon-scaffold_154-1510915933:525607..526422Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:524964..525150TCONS_00049281-exon-scaffold_154-1510915933:524964..525150Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:524091..524313TCONS_00049281-exon-scaffold_154-1510915933:524091..524313Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:522944..523254TCONS_00049281-exon-scaffold_154-1510915933:522944..523254Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:522622..522745TCONS_00049281-exon-scaffold_154-1510915933:522622..522745Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1510915933:521349..521875TCONS_00049281-exon-scaffold_154-1510915933:521349..521875Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:527077..527520TCONS_00049281-exon-scaffold_154-1491911889:527077..527520Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:526936..526956TCONS_00049281-exon-scaffold_154-1491911889:526936..526956Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:525607..526422TCONS_00049281-exon-scaffold_154-1491911889:525607..526422Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:524964..525150TCONS_00049281-exon-scaffold_154-1491911889:524964..525150Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:524091..524313TCONS_00049281-exon-scaffold_154-1491911889:524091..524313Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:522944..523254TCONS_00049281-exon-scaffold_154-1491911889:522944..523254Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:522622..522745TCONS_00049281-exon-scaffold_154-1491911889:522622..522745Clytia hemisphaericaexon
TCONS_00049281-exon-scaffold_154-1491911889:521349..521875TCONS_00049281-exon-scaffold_154-1491911889:521349..521875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:521349..527520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0432987	0.0422802	0	0.029586	0	0	0	0	0	0	0	0.0328704	0	0	0	0.25668	0	0	0	0.448601	0.515912	7.17427	11.7565	2.50275	1.28871	0.146277	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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