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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049278 ID=TCONS_00049278|Name=TCONS_00049278|organism=Clytia hemisphaerica|type=transcript|length=2762bp
TTTGCAGAGCTTTCGTACAGTAACCACTTGTTCATGATCCAGACAAGATA
CATCTTACAATAAAGTCAGTAACAGAAACAGTATCCGTTTAGGCTGTggt
tttgttgtgttttttgttgttgaacttTTGGTATAACATTTAACCATTAA
AGGGTTTTATTAACCATTGTATGGTTTAGAGTAGAGACAAAATTACCATT
GAACGGGCGAGAAGATATCGCATTTGGTACATAACAACCAAGTCAAAATT
AGACTTCCAAGGATCCAGAACCATTATAAATCAATTATCTAACCTGGATA
CAGAGAAAGTAATGGATGATCTTGGTAATTCAACCAACGTTGAAGAAGCT
CAACCAACGTCTTCAAATATATCAATTGGTTTGTCGAAATCGGCGAGTAT
GAAACAACTACTGATATATGACAGTTCTCCAGGAATGGAAATCCACGACA
ATtccaaaaagaacaaagaaaaacacTCATTTCCTGCACCACTAAAGAAG
ACTACTTGCCAGCTTGATCTTGAAATCCAACCTTTCTATCACCTCCCTTT
AGATCAATCACCGAATTCGGAAAGTATGATAACTCTTTTTGCAGATGCGT
CAAATTTGAGCAAATCGTACCGAGATCTACCAATATCTAACCAGAATGGA
AAAGAGTTGGACCAACACGTTGACGTTTCAAATCTTTTGGATCAACCAGA
TACAAAATGCTTTGAAGAACCTAAACAATCGTCTACCTTATATTCCGATA
AAAACAACCATCATTTAGATCTGGGAATTCATCAATACTTACCTTGTCAT
AATATAGATTTATCCCCAAATTCTGAAAGCATGGTTACTCTGCTACCAAA
GTCTTTGCCAGATATGAGCCAGTGTTACCAAGAAAATCNTTGACTTTAAT
TATCGTCATAGTACCCTCACTAATCATCAGTGTATATACATTTGCTATCC
ACAAGAAAACTAATGGAATTTTCTTAAGAGATACACCCGTCTCCAAACCA
ATGGTTTATGGCTTATGTTTAATATTACATGGTCACGTAGCTCGATGTTT
GATGTGGCTGACAGTGTTGTATAAGAAGATTTCTTTGATCGGTGTAAGCG
ACGGATTGTGGTTATTTCGAGATATTACCAGTTATGCTGAGACTTTCACC
TATGCATTGCCACAACTGTTTCTTCAAACATACATCGTGGTTCTATATTA
CGGTGAATTCGAACTCATCCAAGCTATTTGTATTGCATCTTCTTGGTTAT
CTGCAGCGTGGGGTATACAATCTCAATTCAAAGGTGCCAAATGGAAATTA
TTGACCTTTGAAATGAATCTGTTTTGGTTTGCATCCAGAGCTGCTGCTAT
CGCATTACTTGCCAGTATTGATAAATCAGCACCATTCATCATGCTACTTG
GTCATTTCATTCTTGTTTGTCCTCTTTGGTTTTGGCAGAACAACATTAAA
CCATTCCGTATTAAAGCAAAGACCAGCCGACTTCAATTATTCATCACCGA
TGCTTTTTACGCCAGCATCTATGGAGCAAGTAATACAGTAACGCCGACTG
TCTGTCGCAACCAGTTTTGGTTATCAATACTGCTCTTTACCGAGAATATT
ATATGTATCATTGCAGGTAGATGTTATGGTAAAGTTGACAGAACTATCGG
ACATTTTAAACGAAATTGTGATTACTATTCGGACGCTTTAAATAGTAAGA
ATCTGGAACAATCATTTTTCAATGATACAAAGTATTGCCAACATATGCCA
CAATTTGATGATCAGATTCATTGCGCAGTTGATTTTAACCAGTGGATTCA
ATCGAAAATTACTTTCTGGTTATCTATTGGTGTTGCCGTCTTTGCTTTTA
TCCAACTCCTTATTGTTGTGATTCTCAGAAGGTATAAGTACATTTCTGCA
GAAGCAATGGTATCGAAACTGGGTACTCCTACACGATTGTCATCAGCTAA
TGGACGAATCAATGATTCTTTATCCAAGACAACTGCACCAGTATCCTCAT
CATCAACCCGAAACCGTGGTTCTATTCCGTCTTCACCACCAGGAAATGGA
GGGAATCTCTCTGGAAACCCAATCACCAAATTACGTGGTTCAATTCCATT
TCTACCAGAAAACTGTGGTAGTCTCGATGAAAATAATCCCATCCACTTAG
TCTAGTTATTCTTTGCTTAGGAAATGTCtctctgaaaatattttattgcc
AGATCGTGAAAACATTAGAAAATAAGTACTGAACTGTGTAGTCAAACTGA
TCGACACTGTTTAAAAATGTGACTGTTAGCCGTCAGAATAATCAGACATG
AAACCCTCAAACTTTCTCTTAAGACAGcttctttaaattttgaaggggcT
CCCAAGGTAATTTGGCAGAAAATCTTTTGGGAGATTCTGTGAAAGGGGGA
TTGTTGTTATGTGGTAGTAATTTTGACATCGTATAACCTTTTGACTGCAA
GTAAATCAAATTGGTAATCCAAGAGCTAACGGAATCTATACCGTTTGGTA
TCTTTACACCCTTTAGGCAAACCTTTTACATATAACTTTTTGTGAAATTG
GGAAATTTTAAGCGGGCAGCGTGCCAGCATAGTGTTTGTACAGTTTAAAG
CGCAATGTAAATATTGTTTCGTCagatttttataagatactgtAATTTGA
TAATTTGTAAATATTGAGATTAAACTAATATAGTTTTTAGACATTTCGTT
TTGACTAAATGGATTTTAATGTGTGTAAATTGACAAGTGAAATTAGTGAA
ATTTATCTGGTA Run BLAST on NCBI transcript from alignment at scaffold_154:467745..474056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049278 ID=TCONS_00049278|Name=TCONS_00049278|organism=Clytia hemisphaerica|type=transcript|length=6312bp|location=Sequence derived from alignment at scaffold_154:467745..474056- (Clytia hemisphaerica)
TTTGCAGAGCTTTCGTACAGTAACCACTTGTTCATGATCCAGACAAGATA
CATCTTACAATAAAGTCAGTAACAGAAACAGTATCCGTTTAGGCTGTGGT
TTTGTTGTGTTTTTTGTTGTTGAACTTTTGGTATAACATTTAACCATTAA
AGGGTTTTATTAACCATTGTATGGTTTAGAGTAGAGACAAAATTACCATT
GAACGGGCGAGAAGATATCGCATTTGGTACATAACAACCAAGTCAAAATT
AGGTAAGTGCTATATTCCATTGCAATGTTTTAACATTACATCATAGACCC
AACAGATTGGTTGAAAGTGACGTATTGGTTGATTTTACATCACTTACAAC
CAATCATCTGCTGGGTCCGTGATTTAATGTAATAAAACATTGCAATGGTG
CATATTATTAAAAAATATNCCGAATTCGGAAAGTATGATAACTCTTTTTG
CAGATGCGTCAAATTTGAGCAAATCGTACCGAGATCTACCAATATCTAAC
CAGAATGGAAAAGAGTTGGACCAACACGTTGACGTTTCAAATCTTTTGGA
TCAACCAGATACAAAATGCTTTGAAGAACCTAAACAATCGTCTACCTTAT
ATTCCGATAAAAACAACCATCATTTAGATCTGGGAATTCATCAATACTTA
CCTTGTCATAATATAGATTTATCCCCAAATTCTGAAAGCATGGTTACTCT
GCTACCAAAGTCTTTGCCAGATATGAGCCAGTGTTACCAAGAAAATCTGG
AAATACAGCATGCGAATTCAACACCAAATTTGGTGGACTCAGAGAAGAAA
AGAATTGAATTGCCCACGTCATCTCTTAGGGAGTTTGATTCAGAACTTTC
ATCAATTCCATCAGATCTCAAAGAAAACAAGAATGTTAAGAAATCACAAC
GTATCCAATCATCAAAGCATCGTTATTTCAAAAATAATTTCAAGCGTGTA
TCAACTTTCACCAGAGGTAAACAACAAGTAAGTACATGACGTTGTTTCAA
CGTTCATTTAACGTCACGGGACGTTATGAACCGTTAAAGAAACGTCGTGT
ACTAGAGATTACGTAATTTCGTTTTCTCTTATTTTCGAACTTTTTTTCCC
GATTGAATCCAATTTCATACCAAAACTCTTTTTCATTTCCCTATTTTTCG
TAAAAATGTATTTCGTGGTACTAATTCTCTCAGTTGACACACAAAAACCT
CGAAAATATTGTTTGCGTGAAAATTCCTTACCGTTAAAATTAGATTCATT
AAGGAAAATGATTTAATCTACTTGATCCGTTGCCTATAATAGAATTGAGA
AGTATCTACAGCGTGTCCCAAAAAAAGCAGAATAATTTCTATATAAGTAA
AAATCTTATATTCTCGAAACTTATTATCTAAACTGGGCTTAATTGAAAAA
TATTAAAATTTTCTGTTCAATCAGGTATGTATTCAGATATACTATATTCA
ATTCCCAAGATGATTTAATAAGTTTTTGGGATTGAAATATTAAGGATACA
AGTTATAAAATTTGGCATAAATAATGAGGATTTTACTCCATGTGAAGGTT
TTTCCGCTTTTTTTAGGACATACTGTAAGTACATCTCATATTCTTTATTA
ACAGAGTTTGTTAATGACAGCGCAATGGCAACACAAGNTTCTTACAGACT
TCCAAGGATCCAGAACCATTATAAATCAATTATCTAACCTGGATACAGAG
AAAGTAATGGATGATCTTGGTAATTCAACCAACGTTGAAGAAGCTCAACC
AACGTCTTCAAATATATCAATTGGTTTGTCGAAATCGGCGAGTATGAAAC
AACTACTGATATATGACAGTTCTCCAGGAATGGAAATCCACGACAATTCC
AAAAAGAACAAAGAAAAACACTCATTTCCTGCACCACTAAAGAAGACTAC
TTGCCAGCTTGATCTTGAAATCCAACCTTTCTATCACCTCCCTTTAGATC
AATCACCGAATTCGGAAAGTATGATAACTCTTTTTGCAGATGCGTCAAAT
TTGAGCAAATCGTACCGAGATCTACCAATATCTAACCAGAATGGAAAAGA
GTTGGACCAACACGTTGACGTTTCAAATCTTTTGGATCAACCAGATACAA
AATGCTTTGAAGAACCTAAACAATCGTCTACCTTATATTCCGATAAAAAC
AACCATCATTTAGATCTGGGAATTCATCAATACTTACCTTGTCATAATAT
AGATTTATCCCCAAATTCTGAAAGCATGGTTACTCTGCTACCAAAGTCTT
TGCCAGATATGAGCCAGTGTTACCAAGAAAATCNTTGACTTTAATTATCG
TCATAGTAAGTACTGTTTTACTATTAAGCGGCCGTAGTATGAAGGTAGAG
CATCCAGCTACGATGCGCAAGTTCGTCGTGGGTTCCGTCCCCGGCCGGGT
CATGCCAAAGATTTCTTACTTAATACAAAATGGTACTTGACGCCTTTCTG
CTTGATTAAGGAAAGGATCAAGGAAAAGTTGAGCAACCCAGGAAGAAAGA
GTGGCGCTCTCCCCTACCTTCGAATGGACAGCTATCGAAACAGGAGCCTT
CGGGTCGCCTTCGACTGCGGTTGCAAACTTATTTGATATTAAAGTCATTA
TTATTATTTTTGTGGTAGTTCGGTCCTTGCTATCTAGTTTTTATGGAGTA
CCAAGCATTTCACTTTTCCGCTTAAATCCTTATTTACCAACGCACTGGCT
TCATTGACCAGATTGTCGAGCACAAATTTATGATATGCACCATTGTAATG
TCTTCTGACATTACATCACGGACCCAACAGCTGATTGGTTGTAAGTGACG
TNACTCAGAGAAGAAAAGAATTGAATTGCCCACGTCATCTCTTAGGGAGT
TTGATTCAGAACTTTCATCAATTCCATCAGATCTCAAAGAAAACAAGAAT
GTTAAGAAATCACAACGTATCCAATCATCAAAGCATCGTTATTTCAAAAA
TAATTTCAAGCGTGTATCAACTTTCACCAGAGGTAAACAACAAGTAAGTA
CATGACGTTGTTTCAACGTTCATTTAACGTCACGGGACGTTATGAACCGT
TAAAGAAACGTCGTGTACTAGAGTAATTTCGTTTTCTCTTATTTTCGAAC
TTTTTTTTCCCGATTGAATCCAATTTCATACCAAAACTCTTTTTCATTTC
CCTATTTTTCGTAAAAAATGTATTTCGTGGTACTAATTCTCTCAGTTGAC
ACACAAAAACCTCGAAAATATTGTTTGCGTGAAAATTCCTTACCGTTAAA
ATTAGATTCATTAAGGAAAATGATTTAATCTACTTGATCCGTTGCCTATA
ATAGAATTGAGAAGTATCTACAGCGTGTCCCAAAAAAAGCAGAATAATTT
CTATATAAGTAAAAATCTTATATTCTCGAAACTTATTATCTAAACTGGGC
TTAATTGAAAAATATTAAAATTTTCTGTTCAATCAGGTATGTATTCAGAT
ATACTATATTCAATTCCCAAGATGATTTAATAAGTTTTTGGGATTGAAAT
ATTAAGGATACAAGTTATAAAATTTGGCATAAATAATGAGGATTTTACTC
CATGTGAAGGTTTTTCCGCTTTTTTTAGGACATACTGTAAGTACATCTCA
TATTCTTTATTAACAGAGTTTGTTAATGACAGCGCAATGGCAACACAAGA
AATGTTCAAACATGTTTCAAAAGGTATCCCAGACACACCCAAATATTTCA
CCACGGGAAATGCTGGTATTGCGTTGGCTCTTCTCTCTATTCTTCTACAC
ATGATAAACATGTATACAGATGTGGCTGTTGCATTTTATTATTTCAAGAA
AAATGATTATTATTTTGGAAGCTTGACTTTAATTATCGTCATAGTAAGNT
GGTTGTAAGTGACGTAAAATCAGTCAATACGTCATTTGCAACCAATCAGC
TGTTGGGTCCGTGGAAGACATTGCAATGGTGCATATCATGAATAGATTTC
CATCTAAAAATTATTTGTTTCTAATTTTCTTTAGGTACCCTCACTAATCA
TCAGTGTATATACATTTGCTATCCACAAGAAAACTAATGGAATTTTCTTA
AGAGATACACCCGTCTCCAAACCAATGGTTTATGGCTTATGTTTAATATT
ACATGGTCACGTAGCTCGATGTTTGATGTGGCTGACAGTGTTGTATAAGA
AGATTTCTTTGATCGGTGTAAGCGACGGATTGTGGTTATTTCGAGATATT
ACCAGTTATGCTGAGACTTTCACCTATGCATTGCCACAACTGTTTCTTCA
AACGTAAGTTTATGTAATTTACGACTGCAGTTTTGGGCGACTCGATGCCC
TTTCTTGTTTAGCCATATATCTTTCTCGTTTTCTATTGGTCCTTGGCTTA
AGAGCGGCAGTACTTAAGCTGTCAAAAGTTTGGTCGTTATTTCAAGGCAT
GCACTTCTATTGTTATCGTTGTTAAGATGTGTACCTTCAGGTAAAAGGTA
TAATTTATTTTTTGCTGAATTTGAATACACCAAGTCTCATACCTTCAAGT
CTTTTTTATTGCCAAGAAAAACTAAGTCAAGTCTAGTTTGGAGTCAAATT
TTAACCTTCTCTTCTCTTTTGTCAGNTCAAGTCTTTTTGTAGTTTGGAGT
CAAATTTTAACCTCCTCTTCTCTTTTGTCAGAAAATATTTAATTTTTTAG
TCTAACCATTGTGGTAAGCTCACCAACTACCCAACTACTATTATGTATTC
TTAAAAAGTATGCAATTTGATTTTTCTAGATACATCGTGGTTCTATATTA
CGGTGAATTCGAACTCATCCAAGCTATTTGTATTGCATCTTCTTGGTTAT
CTGCAGCGTGGGGTATACAATCTCAATTCAAAGGTGCCAAATGGAAATTA
TTGACCTTTGAAATGAATCTGTTTTGGTTTGCATCCAGAGCTGCTGCTAT
CGCATTACTTGCCAGTATTGATAAATCAGCACCATTCATCATGCTACTTG
GTCATTTCATTCTTGTTTGTCCTCTTTGGTTTTGGCAGAACAACATTAAA
CCATTCCGTATTAAAGCAAAGACCAGCCGACTTCAATTATTCATCACCGA
TGCTTTTTACGCCAGCATCTATGGAGCAAGTAATACAGTAACGCCGACTG
TCTGTCGCAACCAGTTTTGGTTATCAATACTGCTCTTTACCGAGAATATT
ATATGTATCATTGCAGGTAGATGTTATGGTAAAGTTGACAGAACTATCGG
ACATTTTAAACGAAATTGTGATTACTATTCGGACGCTTTAAATAGTAAGA
ATCTGGAACAATCATTTTTCAATGATACAAAGTATTGCCAACATATGCCA
CAATTTGATGATCAGATTCATTGCGCAGTTGATTTTAACCAGTGGATTCA
ATCGAAAATTACTTTCTGGTTATCTATTGGTGTTGCCGTCTTTGCTTTTA
TCCAACTCCTTATTGTTGTGATTCTCAGAAGGTATAAGTACATTTCTGCA
GAAGCAATGGTATCGAAACTGGGTACTCCTACACGATTGTCATCAGCTAA
TGGACGAATCAATGATTCTTTATCCAAGACAACTGCACCAGTATCCTCAT
CATCAACCCGAAACCGTGGTTCTATTCCGTCTTCACCACCAGGAAATGGA
GGGAATCTCTCTGGAAACCCAATCACCAAATTACGTGGTTCAATTCCATT
TCTACCAGAAAACTGTGGTAGTCTCGATGAAAATAATCCCATCCACTTAG
TCTAGTTATTCTTTGCTTAGGAAATGTCTCTCTGAAAATATTTTATTGCC
AGATCGTGAAAACATTAGAAAATAAGTACTGAACTGTGTAGTCAAACTGA
TCGACACTGTTTAAAAATGTGACTGTTAGCCGTCAGAATAATCAGACATG
AAACCCTCAAACTTTCTCTTAAGACAGCTTCTTTAAATTTTGAAGGGGCT
CCCAAGGTAATTTGGCAGAAAATCTTTTGGGAGATTCTGTGAAAGGGGGA
TTGTTGTTATGTGGTAGTAATTTTGACATCGTATAACCTTTTGACTGCAA
GTAAATCAAATTGGTAATCCAAGAGCTAACGGAATCTATACCGTTTGGTA
TCTTTACACCCTTTAGGCAAACCTTTTACATATAACTTTTTGTGAAATTG
GGAAATTTTAAGCGGGCAGCGTGCCAGCATAGTGTTTGTACAGTTTAAAG
CGCAATGTAAATATTGTTTCGTCAGATTTTTATAAGATACTGTAATTTGA
TAATTTGTAAATATTGAGATTAAACTAATATAGTTTTTAGACATTTCGTT
TTGACTAAATGGATTTTAATGTGTGTAAATTGACAAGTGAAATTAGTGAA
ATTTATCTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00049278-exon-scaffold_154-1575043694:473805..474056 | TCONS_00049278-exon-scaffold_154-1575043694:473805..474056 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1575043694:471752..472409 | TCONS_00049278-exon-scaffold_154-1575043694:471752..472409 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1575043694:469804..470072 | TCONS_00049278-exon-scaffold_154-1575043694:469804..470072 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1575043694:467745..469327 | TCONS_00049278-exon-scaffold_154-1575043694:467745..469327 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1510915933:473805..474056 | TCONS_00049278-exon-scaffold_154-1510915933:473805..474056 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1510915933:471752..472409 | TCONS_00049278-exon-scaffold_154-1510915933:471752..472409 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1510915933:469804..470072 | TCONS_00049278-exon-scaffold_154-1510915933:469804..470072 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1510915933:467745..469327 | TCONS_00049278-exon-scaffold_154-1510915933:467745..469327 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1491911889:473805..474056 | TCONS_00049278-exon-scaffold_154-1491911889:473805..474056 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1491911889:471752..472409 | TCONS_00049278-exon-scaffold_154-1491911889:471752..472409 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1491911889:469804..470072 | TCONS_00049278-exon-scaffold_154-1491911889:469804..470072 | Clytia hemisphaerica | exon |
| TCONS_00049278-exon-scaffold_154-1491911889:467745..469327 | TCONS_00049278-exon-scaffold_154-1491911889:467745..469327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:467745..474056 - |
Blast
The following BLAST results are available for this feature:
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