TCONS_00049063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049063
Unique NameTCONS_00049063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049063 ID=TCONS_00049063|Name=TCONS_00049063|organism=Clytia hemisphaerica|type=transcript|length=387bp
cGAATGTTGGAGCTTGAATGTCATTCATCTGGGTTCAAAGCAGGCTTCAG
TTTGCCCAAACTAGAATCTAAAAGTTTACCATACTCCATCAGTTTCTCTC
GTAACACCACGTGTGGTTCGATCAACAAAACATCAAAAGATCATATCAGT
GATGGAAGAATTTGGATGGAATCGAATTTTACTGATTGCGGAGTGAAAGC
TCATTATATTGGTGATAGCATTGCCTTTGAACAAACCATTGTGATTGAAT
ATGGGTCAAAAAGTCTCTCATCTGTAGTGTACCGATATCTGACCTCCTCC
CACGTGGTGAAGTGTTTCCTTGATCGAAAAATCACTCAGAAATTGAACAT
CAATGTTCAGGACGTTCAAGAAGAAGCTCCTTCTGTC
Run BLAST on NCBI

protein sequence of TCONS_00049063-protein

>TCONS_00049063-protein ID=TCONS_00049063-protein|Name=TCONS_00049063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
RMLELECHSSGFKAGFSLPKLESKSLPYSISFSRNTTCGSINKTSKDHIS
DGRIWMESNFTDCGVKAHYIGDSIAFEQTIVIEYGSKSLSSVVYRYLTSS
HVVKCFLDRKITQKLNINVQDVQEEAPSV
Run BLAST on NCBI

transcript from alignment at scaffold_15:471831..472217

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049063 ID=TCONS_00049063|Name=TCONS_00049063|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at scaffold_15:471831..472217 (Clytia hemisphaerica)
GACAGAAGGAGCTTCTTCTTGAACGTCCTGAACATTGATGTTCAATTTCT
GAGTGATTTTTCGATCAAGGAAACACTTCACCACGTGGGAGGAGGTCAGA
TATCGGTACACTACAGATGAGAGACTTTTTGACCCATATTCAATCACAAT
GGTTTGTTCAAAGGCAATGCTATCACCAATATAATGAGCTTTCACTCCGC
AATCAGTAAAATTCGATTCCATCCAAATTCTTCCATCACTGATATGATCT
TTTGATGTTTTGTTGATCGAACCACACGTGGTGTTACGAGAGAAACTGAT
GGAGTATGGTAAACTTTTAGATTCTAGTTTGGGCAAACTGAAGCCTGCTT
TGAACCCAGATGAATGACATTCAAGCTCCAACATTCg

Coding sequence (CDS) from alignment at scaffold_15:471831..472217

>TCONS_00049063 ID=TCONS_00049063|Name=TCONS_00049063|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_15:471831..472217 (Clytia hemisphaerica)
GACAGAAGGAGCTTCTTCTTGAACGTCCTGAACATTGATGTTCAATTTCT
GAGTGATTTTTCGATCAAGGAAACACTTCACCACGTGGGAGGAGGTCAGA
TATCGGTACACTACAGATGAGAGACTTTTTGACCCATATTCAATCACAAT
GGTTTGTTCAAAGGCAATGCTATCACCAATATAATGAGCTTTCACTCCGC
AATCAGTAAAATTCGATTCCATCCAAATTCTTCCATCACTGATATGATCT
TTTGATGTTTTGTTGATCGAACCACACGTGGTGTTACGAGAGAAACTGAT
GGAGTATGGTAAACTTTTAGATTCTAGTTTGGGCAAACTGAAGCCTGCTT
TGAACCCAGATGAATGACATTCAAGCTCCAACATTCg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031173XLOC_031173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049063-exon-scaffold_15-1491911889:471831..472217TCONS_00049063-exon-scaffold_15-1491911889:471831..472217Clytia hemisphaericaexon
TCONS_00049063-exon-scaffold_15-1510915933:471831..472217TCONS_00049063-exon-scaffold_15-1510915933:471831..472217Clytia hemisphaericaexon
TCONS_00049063-exon-scaffold_15-1575043694:471831..472217TCONS_00049063-exon-scaffold_15-1575043694:471831..472217Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049063-proteinTCONS_00049063-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:471831..472217 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.268785	0	0	0	0	0	0	0	0	0	0	0	0.897742	1.84031	0	0	6.35934	7.89565	0.228529	0.415531	0.427987	2.10083	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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