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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049012 ID=TCONS_00049012|Name=TCONS_00049012|organism=Clytia hemisphaerica|type=transcript|length=1174bp
GTTCAATTAAAGTATATAAAGATTTTGTCAGCTTGttctacGAATTAGTG
ATGTGATGAAAGAAAATTGACTCGTTTACAAAATATACGATATCCGatat
gaaaatgttttgaaaaagatatAACATTGTTTGATTGACGATACTGGACT
TTTGTCCTAAACCAAAAATAAGATTGTTGTCAACTGTTTTTAAAGACATC
AACAAAAAAAATGGTCAGCGAGGAAGATCATTGTCTCATCCATTACTGGA
CTCGAAACAAGGGCGAGAAAATCAATGGTGTTTTAGCTATGGCAACTTTA
AGTACTATCATATTCGCGCTTGGAATATTCGCCAATCTTTTATTGGCTAT
ACCTATTTTattcaatcgaatcaatcgacaAAAAcactttcattattttt
caataagtttttcaaatatattGGTACTGGCTATTGGTGTACCGATATTG
ATGCAAGCTTTCAGTGAAAAGAAGTTCAATATGGGTGATGAATGTAATGG
TTGGTTACCTTTTATGTTTATATTCTTCCCAGTGAAATCCATCTTAGATT
CAGTCATTTTTACCATTGATGCATATTTGGATATTTTACCAGAATCAAGA
TCTAATCGAACAGCGGAAATTGTTATCAAAGTTTCCGGTATATCTATATC
TTGGGTCCTTTCGGTGTTTTTGGCTTGTTATTTCATCTGGATTAACTCGA
ACAGTATAATAATTGCTTTGATTGTGCTATTTGCTACAACTTTTGTTTTG
GAGTTAATTCTCTTGATTCACACAAGCAAGTGCGTTAACAAACAGATAAG
TAATGCCACTCAATCAAATTGTGACGTCATAGATCCAGACTTGGATGACG
TCATACTTAAGTTACATGGACAAAAGAAATACTTGAATCGAAAAACAATT
ATGATTATCGTAAGCGCTATTTTGATTGGACAATATTtggttaatttgaa
aatttggactgaccaatcaaaatatttgaacaaTCAATTGTTTTTCAGTA
TTATTTTCGGGACATATAATACGGTGACTTTTGCATTGTTGATTGCGTGG
GAACAAAGGATTCTTCAGAAATTTTATTATAGACATTGTATTAGTCATAG
GGTTGTTGTCCCTGcttgattttaaaataattgtactgtatttttaaggg
aaaaaaagaaaaattaaattgcat Run BLAST on NCBI protein sequence of TCONS_00049012-protein >TCONS_00049012-protein ID=TCONS_00049012-protein|Name=TCONS_00049012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MVSEEDHCLIHYWTRNKGEKINGVLAMATLSTIIFALGIFANLLLAIPIL
FNRINRQKHFHYFSISFSNILVLAIGVPILMQAFSEKKFNMGDECNGWLP
FMFIFFPVKSILDSVIFTIDAYLDILPESRSNRTAEIVIKVSGISISWVL
SVFLACYFIWINSNSIIIALIVLFATTFVLELILLIHTSKCVNKQISNAT
QSNCDVIDPDLDDVILKLHGQKKYLNRKTIMIIVSAILIGQYLVNLKIWT
DQSKYLNNQLFFSIIFGTYNTVTFALLIAWEQRILQKFYYRHCISHRVVV
PA Run BLAST on NCBI transcript from alignment at scaffold_15:185974..189462- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049012 ID=TCONS_00049012|Name=TCONS_00049012|organism=Clytia hemisphaerica|type=transcript|length=3489bp|location=Sequence derived from alignment at scaffold_15:185974..189462- (Clytia hemisphaerica)
GTTCAATTAAAGTATATAAAGATTTTGTCAGCTTGGTAAGTGAGATCAAT
TTTCACTTTATTTGAAAAAGAGGAGCTCTTGCTTTGAATAAGGAGTAGGA
CCCATTCCTGTAATCTGGAGGTAAATTATATCACGGTGATATCTATCTAG
CCTATCTATCTATCTATTCAAAAGAATTATTAAGATGTTCAGTTTGCTTT
GATATAATGTTCTATGCTATTATACAAGTTCCTTGGGTATAATCAATACG
ATGTTGGAAAGAGATTTTTGAGTAGATGAGATCAAAAATCAAAAATGAGA
AGGTCTCTTGAATAAAAAATGTCTATTTTTGCCGCTAATGTCTCACTTTA
TTTGAAGTCTAATTTAGCAAGGATTGGCTGTACACGTTTTTTTTATTTTG
ATATATTACTCTATGCTCTAACAAATTCCTTGGGTATATAATCAATACGT
TGTTGGAAGAGAGTTTTGAGTGGATAATCAAAAGATGATAAATGAGAAGG
TCTCATGATGCAAAAAATGTCTATTTTGTCCCTATCTGTGTTTCACTTTA
TTTGAAGTTTTGAAGTCTAATGAAAAGCATTAGCAGTATAAGTGTTCAGT
TTATTTTGATACATTGCTCTATGCTCTAACAAGCTCCTTGGGTATAATCA
ATTTGATGTTGGAAAGCGATGGATGATGAAATCAAAGATTGAGAGAATGA
TGAAAAATGAGGAGTTCCCTTCGACCAAAAATCTTAAAAATTTTGATAAT
TCTTTAAATGCCTTCTGGGACTAATAGTCTCTAGATTTTTTTGGGGAGAG
GAGATCTTTGGGGGATTTCGAAAATGGATATGAATACTATGAGAATCTAT
GAGTAGAATTGCAAGCTTTAATCAAGACAAGAAATTTATTTAAATCAGAA
TTTTTCACTTAACAAAAATATTATGGAAATTAAAGTCTCATAAATTATTG
AGTAACCTTTTTTGTATTATTTTATATTTGAAAAACAAATCTTCTATTAT
TTTAGACGATAACATCAAAAATCCTTCCATCAAAAATATTTATATCTAAG
TTGTCATGGCAACTAAAGTAAAACAAACAAATTGTTTTGTTAAAATCTAC
GTTCATACTTTTTCAATAATACGGAACTAGAAATTATTTTCAAAAATAAA
ATCAATGAAATGAAATAAAAACATAAAAGGACTAGGCCCGAATTAAAAAC
TGAGATCTAAGCATATTTTCATGAGTCTCTAACTCATACAGGTTTTTTAT
TTGCTTGTAGTCTAAACAAAACCCTACTTGCTTAATGTTGATTTTTCGCT
TAGAAGGTTGAATTTAAACAAATTCTTTTTGTTCATATTTCCCCATATAC
TTTACTTTAGTTCATAAATGTTATTGATTTTTTTTTCAGTTCTACGAATT
AGTGATGTGATGAAAGAAAATTGACTCGTTTACAAAATATACGATATTCG
ATATGAAAATGTTTTGAAAAAGATATAACATTGTTTGATTGACGATACTG
CACTTTTGTCCTAAACCAAAAATAAGGTAAGAATGTTTAACCCAGCCGAA
CATTTTGTTAACGTTCATTTTGAACAATTTTTTGACGTTAGATTGTTCAT
GATTTCTTGACATGCGCCCCATGGCAAACCATTCTTCTATAACCCTCCTC
TCAATAGTTCTTCTGGTCAAACGGGNTCCGTATATTTTACTTTAGTTCGT
AAATGTTATTGATTTTTTTTCAGTTCTACGAATTAGTGATGTGATGAAAG
AAAATTGACTCGTTTACAAAATATACGATATCCGATATGAAAATGTTTTG
AAAAAGATATAACATTGTTTGATTGACGATACTGGACTTTTGTCCTAAAC
CAAAAATAAGGTAAGAATGTTTAACCCAGCCGAACATTTTGTTAACGTTC
ATTTTGAACAATTTTTGGACGTTAGATTGTTCATGATTTCTTGACATGCG
CCCCATGGCAAACCATTCTTCTATAACCTTCCTCTCAATAGTTCTTCTGG
TCAAACGGGGAGACAGGGTTGTTTGAAATTACCAAAAAAGAAAGGCATCC
CTAAATCCCAGTCAACTATAAAAAAACATTCAGTGACTGGGATGTTTTAA
TTAAATGATGTTCCAAAAATGAAATTGACTATCCGTATTTCATACTACTG
TCCATCAAACCATTCAAAGTTATCTTACCAACGAAGCATTATCCTTAAAT
AATTTATTTTTCCCTCTCAAGAGGATTTTTAAAAGTTTACACCCAATTTT
TTTGGAACAGATTTCAAATTTTCAAAATTTCAGTCTCAAACATCTTTTTT
CTTTGTTTCATTTAAGTACTTATATTTCAACCGTAAATAAAAAAATTCAT
TATCCTCTTTTTTAATTTAAGAATCACTTAAGAATATTTTAAGTCTAAAA
GTTGAAATTTTTAAGTCTCATTCCGATTTGTAATTTTTATGAAAAAGTAT
GTCACGTGTGTAAAATCTATTTCTACTTTTATTCTAGATTGTTGTCAACT
GTTTTTAAAGACATCAACAAAAAAAATGGTCAGCGAGGAAGATCATTGTC
TCATCCATTACTGGACTCGAAACAAGGGCGAGAAAATCAATGGTGTTTTA
GCTATGGCAACTTTAAGTACTATCATATTCGCGCTTGGAATATTCGCCAA
TCTTTTATTGGCTATACCTATTTTATTCAATCGAATCAATCGACAAAAAC
ACTTTCATTATTTTTCAATAAGTTTTTCAAATATATTGGTACTGGCTATT
GGTGTACCGATATTGATGCAAGCTTTCAGTGAAAAGAAGTTCAATATGGG
TGATGAATGTAATGGTTGGTTACCTTTTATGTTTATATTCTTCCCAGTGA
AATCCATCTTAGATTCAGTCATTTTTACCATTGATGCATATTTGGATATT
TTACCAGAATCAAGATCTAATCGAACAGCGGAAATTGTTATCAAAGTTTC
CGGTATATCTATATCTTGGGTCCTTTCGGTGTTTTTGGCTTGTTATTTCA
TCTGGATTAACTCGAACAGTATAATAATTGCTTTGATTGTGCTATTTGCT
ACAACTTTTGTTTTGGAGTTAATTCTCTTGATTCACACAAGCAAGTGCGT
TAACAAACAGATAAGTAATGCCACTCAATCAAATTGTGACGTCATAGATC
CAGACTTGGATGACGTCATACTTAAGTTACATGGACAAAAGAAATACTTG
AATCGAAAAACAATTATGATTATCGTAAGCGCTATTTTGATTGGACAATA
TTTGGTTAATTTGAAAATTTGGACTGACCAATCAAAATATTTGAACAATC
AATTGTTTTTCAGTATTATTTTCGGGACATATAATACGGTGACTTTTGCA
TTGTTGATTGCGTGGGAACAAAGGATTCTTCAGAAATTTTATTATAGACA
TTGTATTAGTCATAGGGTTGTTGTCCCTGCTTGATTTTAAAATAATTGTA
CTGTATTTTTAAGGGAAAAAAAGAAAAATTAAATTGCAT Coding sequence (CDS) from alignment at scaffold_15:185974..189462- >TCONS_00049012 ID=TCONS_00049012|Name=TCONS_00049012|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_15:185974..189462- (Clytia hemisphaerica)
ATGGTCAGCGAGGAAGATCATTGTCTCATCCATTACTGGACTCGAAACAA
GGGCGAGAAAATCAATGGTGTTTTAGCTATGGCAACTTTAAGTACTATCA
TATTCGCGCTTGGAATATTCGCCAATCTTTTATTGGCTATACCTATTTTA
TTCAATCGAATCAATCGACAAAAACACTTTCATTATTTTTCAATAAGTTT
TTCAAATATATTGGTACTGGCTATTGGTGTACCGATATTGATGCAAGCTT
TCAGTGAAAAGAAGTTCAATATGGGTGATGAATGTAATGGTTGGTTACCT
TTTATGTTTATATTCTTCCCAGTGAAATCCATCTTAGATTCAGTCATTTT
TACCATTGATGCATATTTGGATATTTTACCAGAATCAAGATCTAATCGAA
CAGCGGAAATTGTTATCAAAGTTTCCGGTATATCTATATCTTGGGTCCTT
TCGGTGTTTTTGGCTTGTTATTTCATCTGGATTAACTCGAACAGTATAAT
AATTGCTTTGATTGTGCTATTTGCTACAACTTTTGTTTTGGAGTTAATTC
TCTTGATTCACACAAGCAAGTGCGTTAACAAACAGATAAGTAATGCCACT
CAATCAAATTGTGACGTCATAGATCCAGACTTGGATGACGTCATACTTAA
GTTACATGGACAAAAGAAATACTTGAATCGAAAAACAATTATGATTATCG
TAAGCGCTATTTTGATTGGACAATATTTGGTTAATTTGAAAATTTGGACT
GACCAATCAAAATATTTGAACAATCAATTGTTTTTCAGTATTATTTTCGG
GACATATAATACGGTGACTTTTGCATTGTTGATTGCGTGGGAACAAAGGA
TTCTTCAGAAATTTTATTATAGACATTGTATTAGTCATAGGGTTGTTGTC
CCTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049012-exon-scaffold_15-1575043694:189428..189462 | TCONS_00049012-exon-scaffold_15-1575043694:189428..189462 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1575043694:187603..187739 | TCONS_00049012-exon-scaffold_15-1575043694:187603..187739 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1575043694:185974..186975 | TCONS_00049012-exon-scaffold_15-1575043694:185974..186975 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1510915933:189428..189462 | TCONS_00049012-exon-scaffold_15-1510915933:189428..189462 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1510915933:187603..187739 | TCONS_00049012-exon-scaffold_15-1510915933:187603..187739 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1510915933:185974..186975 | TCONS_00049012-exon-scaffold_15-1510915933:185974..186975 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1491911889:189428..189462 | TCONS_00049012-exon-scaffold_15-1491911889:189428..189462 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1491911889:187603..187739 | TCONS_00049012-exon-scaffold_15-1491911889:187603..187739 | Clytia hemisphaerica | exon |
| TCONS_00049012-exon-scaffold_15-1491911889:185974..186975 | TCONS_00049012-exon-scaffold_15-1491911889:185974..186975 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_15 | supercontig | scaffold_15:185974..189462 - |
Blast
The following BLAST results are available for this feature:
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