TCONS_00048961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048961
Unique NameTCONS_00048961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048961 ID=TCONS_00048961|Name=TCONS_00048961|organism=Clytia hemisphaerica|type=transcript|length=1194bp
cTGGCAACCTCAAGACCTCCAAAGTGTCATTTTCAAACGAAACATACAGC
AATTTTAATGACAAAGGCTTAAAAAACAGAATGGTCTGCTATCAAAAGCT
CAAGTGGGCTCTCAAATTATCCTGATGTCAAGAAATCTTGATCAATTGAA
GGAGACTCAGAGGTTAATGGAAGATGGATCTACAAACAGTGAACATTTTt
taatccaatgtgaaaagctGGATCTTAGCGATACAAATGCTgttgaaatt
aaatttcctgATCTGCTTATGTCTTTAACAGGAGAATTTGATCATGTCTT
ATTTTTCAATAATGCTGGTTCAATTGCTGATGTTTCTAAACCTATCTTAG
ACTATCAATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATT
ATTTCTTCCATTTACATGATTAATGCCNTAAACCTATCTTAGACTATCAA
TGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTTC
CATTTACATGATTAATGCCATGATTCATAAATTTTCTCTCCATCCCTCAA
AAATTGTAATTATCCAAACATCAAGTCTTGCAGCTGTTCAAGAAATGGCG
TATATGCCATTATATTGTGCTGCAAAAACATCAATGGATATGTTCATAAA
ATGTGTTACCAAGGATCATCCCAACATTAAAACATTGAATTATGCTCCAG
GACCTCTAGATACTGCAATGGGACAGGATATGAAAAACAAACATGGCTCA
GATGACACGAGACAGTTTTTTAATCATTTGTTTGAATCTAGAACCATCAT
CAACCCTGATGATTCAGCTGGGAAACTAATGGGTTTGCTGGAAAAAATGG
ATTTTGAATCTGGTGCTCACATAGACTACTATGATGTATAATTTTATTTA
GAAGATTAATAAAAGATTAAAGTTATATTTATATGTCAATAATTCAATTC
TTATCATTTACATAAAGACTTTTCGAGGGGCACAGCAATATAAGAAGAGT
CCTTTCTGGAGGAGGGActttaagttttttaatttgCTGTGGTATTGTTT
ATCTGTTTAATTAATGATCTTCTCCTATAAAGAATAAAGAGAAAATTCCA
AAATCTTATTATTAGCAATGTTGTtataagaaataagaatttctgtccta
CTAATAATAGTTTGGGTGGCACTCCACATTGCACTACTCATCAT
Run BLAST on NCBI

transcript from alignment at scaffold_15:10149..19935+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048961 ID=TCONS_00048961|Name=TCONS_00048961|organism=Clytia hemisphaerica|type=transcript|length=9787bp|location=Sequence derived from alignment at scaffold_15:10149..19935+ (Clytia hemisphaerica)
cTGGCAACCTCAAGACCTCCAAAGTGTCATTTTCAAACGAAACATACAGC
AATTTTAATGACAAAGGCTTAAAAAACAGGTAACAGGAAGAATCCAAATG
TAAGTATGGTGTTGTTAGTTAAATCAGAACAAATTCTCCTAATCATGAAA
GTGTTTGGGGCCATttgccattcaaaaagtacgttcgtcgCCGCGCCGAA
CGTCGTCGAGGagagggggggagggggtcagtAAAAAAGCAAACGAAAAC
AAACAGGGGGGAGGGGgcagaggtgccaactctcacgcattggacGTGAG
ACTCACGCATTCCAACACTGTCTcacgcaatttttcaaaagtttgatttc
tcacgcatttttgatccagacggtactaatcgaacgCTTCGATTACGGAA
GTAATCGAAGAtaatcgaagtaatcgaatgattatttatcgattactgcT
TTCGATGACAGGTAATCGAACGCATTCGATTACAATAATCGAATGCATTC
GATCACTGAAATTTCGTAAATTGGGTGAGTATTCGATTACCCGTTCGATT
ACTTTTCAATGACCCttcgatgacgttcgataacCCTTTGATGACTTCGA
TGACCCTTCGATGACTTCGATGACGTTCGAAAACCCTTCGATGACTTTGA
TAACGCttcgatgacgttcgataacCCTTCAATGACTTTGATTATTGAAA
ATTATTCGATTATCTTCGACAGTCagcaaatccttgcatttgcacggggt
gtGCAGTTTTCCCGACCCTGTGCAATGAGCTAGAACGCGTCAGGCAAATA
Cgtcaatttcaactttaaagtgaaaacgggggaaaatgaagatgagcggg
gctttcattttttctttacgaGATTCTTCATTCGTTAATAAAGAATTGTG
TCCATTGAAAAAAGATTCCacccattcaatcttttttaatcAAGCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTAAGTACGG
TAATTTTTCGAAGTACAATCCAATAGTTCCCTTAACAATTAAAAGCGCCA
AAGTTGTAAAATCGTGGCTTTACCCCAGCTATCtgaatttttgcgatttt
ggatTGTAAGGGAACTACTGTATTGTTGAACTTATAATAGGTAAGTACGA
TAGTTTGTTTACTGTGTTTTCGGTGGTTGTACCTGTCAATTTCCATTCTT
CTCAGTCGCTCAGTCTATATACATGCCGATACTAATGTTTTTTGAGCTAC
CAAGTTACCTAAAacggaaaaaaaatattgaaaccttATTTTGTGTAGAA
GAGATACGGGTAAGAACCCAAAAATAGCTGTTGCGTTAAGTATCGAATTA
AAAAGGAGTTGAAATCATATCACGGCCCTGAAATAGACAAAGATTGTGAC
TCAAGTTATAGTCAAAAAcccaagaaaaatgaaagaatcaAGTTGAAAAA
CTCTAGAATCAAAACTATGACTATCATCAGGTTCGAGTCGTCGCTCAGGT
CAGAACGGCAGTCACGTCGCAAAGTAAGAGTAGTGCAAAGGTGCTTCACT
AGAGAACGTGGAGAAGAGTGCAGGGGTTGATTCTCAGGAAATCTTTATTC
TTTATCAATTTTCTGTTTAACTTCTGTGTAATTTTTACACCTTCCTTTCA
ACGCAAAATTAACGCGGTCAACCAGATCAGATCCCACATTCGCAGAACGG
AGCACGGGTGTGTGCAGAATGATCCGTTCCCAGcagacacacaacgttgt
tttaacgtccatctaacgttatatggacgttagataaacgttgaaacaac
gtgccagctgggttattaGAGTACGATTTCGCCCTACCCAGGCTCTCCCG
TGTGCACAGTACAACGTACGGCCTGGTTCgattaaaattttctgttgAAA
TAAACGAGGGAATAAAGAGATCGAAGCCTTCCATGACTAGTCGAAGTAAT
CGAATGGTAATCGAATGGTAATCGAAGTAATCTAATAAATCTTACAAACC
GATAGTATATCGAATTAATCGAAGagtaatcgaattaatcgaagaGTCAT
CGAAGGGTCATCAAACGTTCATCGAACGGTAATCGAAGAAGATGCAGATA
TTCTGAGGCTGGTGAGTATTcgattatttcaaaatttcggcGTAATCGAT
AAGTCATCATTCGATGACGTTCGATTAtattcgattattatcgattacaa
tcgaacgttcggaacattcgattagtaccgtctggtttgatatttgaaag
aaatttccccgattttccgatgATTTTCCGaataaatttccccgattttc
tgatttttgggaaaatttttttcctgattttccgattttcggaataaatt
tccctgattttccgattttttggaaaaatttttctgttttcCGAAGTCGT
AAAACCGGAAAAATTGGGCTAAGATTTTGgattttccttcgaaattttta
tctcatgcCAAATGCAAATGAACATCTTAAGTTGGCAGGTCTGGGGGGTC
AATTCGATCTGTGTACGTTCGCTTTTGCGAGGGGGGGGTGCTTGTCACAA
GCGTGACTTTTAACTTATAGtctatgaaaaatctttttctatctatctcc
taattatatacattttttctttgaatcgaTAACCGCAAAGATAATTGTTA
ATCCCCTAAACAATTGTGTATGTTATAATTGTTTAGCAATTATTAGATAA
TTAGAGAGCAAAAACTTAAGGTGCGATAAGATTAAAGAATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAATGAAAGTTACCTT
TTCAacataatcttacaatagacagagGGTGAAAGTTTAAACAATGCTCA
ACcgtcaagaaatatttttgctctcagTTTTAACAATTATAATCGAAAAG
AACATATTGGCGAACAATATGTTTTGCGCACCATAATGTACGAAACAAAA
AACGGGTGCTCTATTacgagaaagaattttcttttggtaaacaattcccc
tattGATTCAGGTTGAAAAAGAGAGAAAGTACAGAGGCTGAATGCACgtg
gctttcactttcttttaatcTATGTACTATGActgaatttaaattgaaaa
gagaaaGGGATCATAGTATAATCAGGAAAATTGCgtaaaatataatttgt
ataatcttacataaatgattttttttttaaataaataaagtttcagcgaa
tgaaagtttgtaaattgcctaaatattttatcatgattagcacaattacg
catgaattaatCTATTTTATGCACTTTGGATCATGAATTGTGTATCATAG
Attgttagatcgtgcatcttaaattacaccaaccagcaaaatggcaatgc
cccaGCCATTCTAATTCGCGTCAGCATAGCCGAATGCCGACGCAAATGCC
GACGCAAATGCCGACgtaaatttgactaaaaattgCTGACGTAAAAGTGC
TTACTGTACTATAAAACCCAGAATTTTTTGCTGACGCAAATAAATCTGAA
TTAGAAAGGCTGCCCAAAATATGACAAAGCttgattttcccaaaataatt
tttgggcaaatttgggcaaaaatcAGTTGTGCAAAATAGTTTCACTAagt
ctttttctgatttttggtagaaagatagagttctctaaaaagtggctgga
gtgatttttcccgaaaaaaatttaccttgaaatacacattttaatttttt
tcctgatATGTATCTCATGTTATCTCATGATTGGAAGCTGCTATGAATCA
GTCACCTGATTTACTGGTATTTTACAAACCAGAATCTATTATTTACTCAC
TTACTTCTTCTGACTAGCTCGTGTTTGCAGATGCCAACATTGAGGGGTTA
GGTTTCTTTTTTTCAAGACCTATGTAGAACTCGTCTGCTGACCGACCATC
AAGCACGTGATCTTTGAGTGTTTTGATTGGTCGGCCTCTTTTCTTGTTAC
CGTTGTTGTTGAAAAACAGTCTTTTGACAATGCTGGTGTTCTTTTGTCTT
GCAATATGGCCAAGAAAATTTTGCTGCTGTCATTTGACATATTGAAGGAT
GTCTTCAGTTATGCAAACGCGTAGAACATCTTCACTTGACATGACAAAGT
GGAAAGTTTGTTCATTGTTTTCATTGATTCTTCTTTCAAAGCTGCCTATC
ACCATCTCATGAAGTATATTAACGTAGGTGTATCGGATTATTAAAGGGTT
TTGTTTAATGCTTGATAGCTAAATCAACCTCCCAgcctttttaaataata
tgacaAATTTGGGAAGTGCTATgaacttgttttatttttcagtctgtttc
ttattattattgtaatttttcatattttcttattaaatcaatcttcaggt
aggtccattcagcatgtagcttgttctatttgcttttttaaaatttttaa
ggttATGTTTAATGTCAGTAATGCTGATTGCTGACTTGAAATATGAGGAC
TATTTGGTTTGTTTGCATTTCTTGTAggtaaaaaaatgttatttggAGGA
AAAGTGCTCTGTTTTGTGACAGGTGCTAGTAGTGGATTTGGTCGCTCAAT
ATCTAGGTTGCTTCTTTGTCAGAATGGTCTGCTATCAAAAGCTCAAGTGG
GCTCTCAAATTATCCTGATGTCAAGAAATCTTGATCAATTGAAGGAGACT
CAGAGGTTAATGGAAGATGGATCTACAAACAGTGAACATTTTttaatcca
atgtgaaaagctGGATCTTAGCGATACAAATGCTgttgaaattaaatttc
ctgATCTGCTTATGTCTTTAACAGGAGAATTTGATCATGTCTTATTTTTC
AATAATGCTGGTTCAATTGCTGATGTTTCTAAACCTATCTTAGACTATCA
ATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTT
CCATTTACATGATTAATGCCNTAAACCTATCTTAGACTATCAATGGAGTA
TACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTTCCATTTAC
ATGATTAATGCCATGATTCATAAATTTTCTCTCCATCCCTCAAAAATTGT
AATTATCCAAACATCAAGTCTTGCAGCTGTTCAAGAAATGGCGTATATGC
CATTATATTGTGCTGCAAAAACATCAATGGATATGTTCATAAAATGTGTT
ACCAAGGATCATCCCAACATTAAAACATTGAATTATGCTCCAGGACCTCT
AGATACTGCAATGGGACAGGATATGAAAAACAAACATGGCTCAGATGACA
CGAGACAGTTTTTTAATCATTTGTTTGAATCTAGAACCATCATCAACCCT
GATGATTCAGCTGGGAAACTAATGGGTTTGCTGGAAAAAATGGATTTTGA
ATCTGGTGCTCACATAGACTACTATGATGTATAATTTTATTTAGAAGATT
AATAAAAGATTAAAGTTATATTTATATGTCAATAATTCAATTCTTATCAT
TTACATAAAGACTTTTCGAGGGGCACAGCAATATAAGAAGAGTCCTTTCT
GGAGGAGGGActttaagttttttaatttgCTGTGGTATTGTTTATCTGTT
TAATTAATGATCTTCTCCTATAAAGAATAAAGAGAAAATTCCAAAATCTT
ATTATTAGCAATGTTGTtataagaaataagaatttctgtcctaCTAATAA
TAGTTTGGGTGGCACTCCACATTGCACTACTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031108XLOC_031108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048961-exon-scaffold_15-1491911889:10149..10227TCONS_00048961-exon-scaffold_15-1491911889:10149..10227Clytia hemisphaericaexon
TCONS_00048961-exon-scaffold_15-1510915933:10149..10227TCONS_00048961-exon-scaffold_15-1510915933:10149..10227Clytia hemisphaericaexon
TCONS_00048961-exon-scaffold_15-1575043694:10149..10227TCONS_00048961-exon-scaffold_15-1575043694:10149..10227Clytia hemisphaericaexon
TCONS_00048961-exon-scaffold_15-1491911889:18821..19935TCONS_00048961-exon-scaffold_15-1491911889:18821..19935Clytia hemisphaericaexon
TCONS_00048961-exon-scaffold_15-1510915933:18821..19935TCONS_00048961-exon-scaffold_15-1510915933:18821..19935Clytia hemisphaericaexon
TCONS_00048961-exon-scaffold_15-1575043694:18821..19935TCONS_00048961-exon-scaffold_15-1575043694:18821..19935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:10149..19935 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73562	0.62004	2.65804	1.95214e-07	0.0929359	0.113296	0	0.338267	0	0	0	0	0	0	0	0.179494	0	0	0	0.21402	9.01461e-10	0	0	0.0231294	0	0	0	0	1.22371	2.14888e-07
Blast
[Close]
BLAST of TCONS_00048961 vs. Swiss-Prot (Human)
Match: SPRE (Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.677e-25
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 1 
Query:  370 GLHKIFQPINYFFHLHD*CXKPILDYQWSIQDYTKYFNLSIISSIYMINAMIHKFSLHPS-KIVIIQTSSLAAVQEMAYMPLYCAAKTSMDMFIKCVTKDHPNIKTLNYAPGPLDTAMGQDMKNKHGSDDTRQFFNHLFESRTIINPDDSAGKLMGLLEKMDFESGAHIDYYD 885
            GL ++   IN    L D   K  +D   S Q    Y+ L++ S + + ++++  F   P     ++  SSL A+Q      LYCA K + DM  + +  + PN++ LNYAPGPLDT M Q  +      D R+    L     +++   SA KL+ LLEK +F+SGAH+D+YD
Sbjct:   91 GLQRLLL-INNAGSLGD-VSKGFVDLSDSTQ-VNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYD 260
The following BLAST results are available for this feature:
BLAST of TCONS_00048961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRE5.677e-2534.68Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 ... [more]
back to top