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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048890 ID=TCONS_00048890|Name=TCONS_00048890|organism=Clytia hemisphaerica|type=transcript|length=2584bp
GGATGATCGAGGCAATTTTTTCTGACAAACACACAACAAAGAAATCCCGT
TACAAAAGTCATCTACAGATATGATTGAAGATCACTTAACAAAAAAACAC
AGACGTGTAAACACGACAGGAACAGGGTAACACTAAAACCCTTTCTTAAA
AAACAGAGTCAATCTGTTCTTAAGCACTTTAattcaaacatttcaaaata
aagaagaagaaaaggaaccGATTTCAGGCAGCGAGGGCAAAGCATCGTGG
TGTTATTCAGAGGGTGTGTTCAACTTGACAGCAATCGaaatattacaatt
ttaccGTGTGGGGAATTTGTAATAGTAACAGTTCAAAATTCAAATGTATA
AAAATTGAGTGCAACATCTTTAATCAGAAAGCTTGGAATATAGTGCAGCA
AGCACAAATAACTGATAAATTTTGACGAATCAAGAAGTGCAGTAGCATCG
ACAAAAATAATGGCTTTTATGAAACCAGACGAATTCAGCGCATTTCCACT
TCCATACTTACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCCACTAC
CAAGTATGAATACTTTCTCCAACAAACGAAGACATTCAGAAAACACAACA
TACGAAGCAACTTTACCATTACCACCATTGAAAGTTCCAAAACTCATCTC
TTCAACTAGCAGTCTTCCACCACCACCTCCCCTGGTCACACCAGGTCGAG
GTCACTCTTGCACATCTGATGATTGCAAATACTGCTCAGGATTGACTAAT
CTGGATATTGCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGATACTC
CAAAGCGAAAGCATCCAGTTCATACGAAACGCCTTACTCACCAAACCTTC
CATCTCCAGTCTGCAAGTCTTCAACATTCGATCTTGCATACAAACCACCA
AGTCCTTCAGGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCACCATC
AAGCAGTACTACAAGCGAATCATCAACTAGCTCCACTAAAGATTTGGGAA
TTAAATACCAATGTCAAGTCTGTCATAAATCTTATTCACACCCTCGACTT
TTAAATCGTCACCTTCAATCACACACACCCTACAAAAAACACCACTGCCC
TCGCTGCCGCAAAGGATTTAATGATGCTTTTGATCTGAAAAGACACATTC
GAACACACACTGGAATCAAACCATTTCAATGTCGAATGTGTGAAAAATCA
TTCACTCAGagATGTTCATTGGAAGCTCACATGACAAGAGTACACAATGT
TGTCCACAAGTTCGCTTTCCGTGAACGCCGACCCAAGCTGTTTGTTTGTG
AAGATTGTGGTGTCACCTTCCCTGATAACAACAAGtttcgtcaacatgaa
aaagaaagcaCATGCAGACCAAACAAATCAAACTAAGAGTTTAGTATAAC
AGTTTTAGACAGtaagattgtttgttttatgtttGTAATGTCCCTATTTC
TCCTGCTCTCATTTTATTTGTTTCAGATTCTCAATGTTGAGAAAGAGAGG
AGAAACGTGTTGTCCCTGTATataaattttattctaaatacTTCAACTTA
TATTATAACGTATATATTACGAAAATGTGGAACAAGAAAAGGGTTGGCGG
CTGATTATCACTAATGACTTATATTAAGTCGTAAAATAGCCAGCCAACTA
ATTTGCCCTTTTGGGCAAACAATATTATTTTATAGGAAAGTCTTATTGTA
AACAGTTCACTAACTTTTTGCTACCGTTACAAAACTGTTCTAGTTCTATT
TCAAACTCAAGAAATCAACGTATACAGCAACAGTTGTAACGCTAGCAAAA
AGTTAAGTTATCGTATAAtcatttgttttcaattttatcgTATTGATTGT
AAGAGCGTGAGAGTTTAATGCGAGTGAGTGTTTAAAAGAGAGAAAGTGTG
AGTTCGTGGACTTTAGTCAGTGAGTGTGAATTTATATTAAGTAAGTTAGA
GCGATCTTGAGAGGTACGTTTAACAATAAGAGAAAGGGATGAGAGGTGAT
AAAAAAGTTGACTTACTGAGGCAAGGTCAAAAATTATGACAGATTCTTTC
CTGCGGTTTCTTTATCCAAAAGCTTCTTTTGTTTGTCAAGTCGTCAACGA
CACTCCTTCCctgttcaaaaaaaattaaaacaataagAAAAGACATGACT
GAGAGAGGGAGAGTGAGTGAGTCATCATTAAAAAGCTATAACGATATCAT
ATTAATCTCTATTGACAAAGTATATTAAGTTTAAGGACGTCCATCTATCG
TTCATgagagtttttcaataaaaccacATCTACTCTATCATCTTTTGTTC
AAAATAGGTGGAGCATGAGAAAGTAGAAAGGAATTTCTTTTCTATTCACC
CAATGCCGTTAGATGGCTCCGAAATGTTATTAAACTTAATACCATCCTAT
TAAACATCTAAAAACTAACCATCAGATTACAACTCTTACGATGGTTCTTT
GCGTCGAATATGAATATCATGTAACAAAATCAACCGAgagaaagtttctt
atctttgATAAAGCCGATAACGGTTTCGCCTATTTCTTTTCAGAAGTCTT
TTGGGCCAAGTAATCATATCACCTCAGGTTGGGN Run BLAST on NCBI transcript from alignment at scaffold_148:27804..32316- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048890 ID=TCONS_00048890|Name=TCONS_00048890|organism=Clytia hemisphaerica|type=transcript|length=4513bp|location=Sequence derived from alignment at scaffold_148:27804..32316- (Clytia hemisphaerica)
GGATGATCGAGGCAATTTTTTCTGACAAACACACAACAAAGAAATCCCGT
TACAAAAGTCATCTACAGATATGATTGAAGATCACTTAACAAAAAAACAC
AGACGTGTAAACACGACAGGAACAGGGTAACACTAAAACCCTTTCTTAAA
AAACAGAGTCAATCTGTTCTTAAGCACTTTAATTCAAACATTTCAAAATA
AAGAAGAAGAAAAGGAACCGATTTCAGGCAGCGAGGGCAAAGCATCGTGG
TGTTATTCAGAGGGTGTGTTCAACTTGACAGCAATCGAAATATTACAATT
TTACCGTGTGGGGAATTTGTAATAGTAACAGTTCAAAATTCAAATGTATA
AAAATTGAGTGCAACATCTTTAATCAGAAAGCTTGGAATATAGTGCAGCA
AGCACAAATAACTGGTAAGTAGTACAACATTTTGCATTATTGATTCTACG
TTTATTGATGTGGGAAAAGTATTAGACAGATAAACATATCAATAATCAAA
TTTTTAAGGAATATCTACTCGTAAAATAATCATGAAAATCTTTTCAACAT
TCATAAAACATTTTTTTCATGATACCCTGACGTCAAGTGTTTCACTTTTT
AAATTATAGAAAGCTTCATTGTTTAGGTTTTTCACGAAACTGATTTTCGA
AAAGAAGCAGCAGCATCTTTTGATAAATAAGTAAAATATGAAGCTATTCA
TCTTGGAGTATGATTGAATTATTCAAACTGCATCAACTTAGTATATGAAC
AGCCTCTTGTGATTAATCAGTTTTTAAATGAATTATCCTGTTCTTTTTTC
AACAGATAAATTTTGACGAATCAAGAAGTGCAGTAGCATCGACAAAAATA
ATGGCTTTTATGAAACCAGACGAATTCAGCGCATTTCCACTTCCATACTT
ACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCCACTACCAAGTATGA
ATACTTTCTCCAACAAACGAAGACATTCAGAAAACACAACATACGAAGCA
ACTTTACCATTACCACCATTGAAAGTTCCAAAACTCATCTCTTCAACTAG
CAGTCTTCCACCACCACCTCCCCTGGTCACACCAGGTCGAGGTCACTCTT
GCACATCTGATGATTGCAAATACTGCTCAGGATTGACTAATCTGGATATT
GCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGATACTCCAAAGCGAA
AGCATCCAGTTCATACGAAACGCCTTACTCACCAAACCTTCCATCTCCAG
TCTGCAAGTCTTCAACATTCGATCTTGCATACAAACCACCAAGTCCTTCA
GGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCACCATCAAGCAGTAC
TACAAGCGAATCATCAACTAGCTCCACTAAAGATTTGGGAATTAAATACC
AATGTCAAGTCTGTCATAAATCTTATTCACACCCTCGACTTTTAAATCGT
CACCTTCAATCACACACACCCTACAAAAAACACCACTGCCCTCGCTGCCG
CAAAGGATTTAATGATGCTTTTGATCTGAAAAGACACATTCGAACACACA
CTGGAATCAAACCATTTCAATGTCGAATGTGTGAAAAATCATTCACTCAG
GTAAGATACTTTGAGTTTCTTATTTAGAAAGTCCATAGTTAGTAGACAAA
GTGCCAACAGAGCATAAATACAACATTTTAAGATTAACAACTACACAACA
GCATCTTTTTTTTTGTTTTTTCAGAGATGTTCATTGGAAGCTCACATGAC
AAGAGTACACAATGTTGTCCACAAGTTCGCTTTCCGTGAACGCCGACCCA
AGCTGTTTGTTTGTGAAGATTGTGGTGTCACCTTCCCTGATAACAACAAG
TTTCGTCAACATGAAAAAGAAAGCACATGTAGACCAAACAAATCAAACTA
AGAGTTTAGTATAACAGTTTTAGACAGTAAGATTGTTCGTTTTATGTTTG
TAATGTCCCTATTTCTCCTGCTCTCATTTTATTTGTTTCAGATTCTCAAT
GTTGAGAAAGAGAGGAGAAACGTGTTGTCCCTGTATATAAATTTTATTCT
AAATACTTCAACTTATATTATAACGTATATATTACGAAAATGTGGAACAA
GAAAAGGGTTGGCGGCTGATTATCACTAATGACTTATATTAAGTCGTAAA
ATAGCCAGCCAACTAATTTGCCCTTTTGGGCAAACAATATTATTTTATAG
GAAAGTCTTATTGTAAACAGTTCACTAACTTCTTGCTACCGTTACAAAAC
TGTTCTANAAAATAATGGCTTTTATGAAACCAGACGAATTCAGCGCATTT
CCACTTCCATACTTACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCC
ACTACCAAGTATGAATACTTTCTCCAACAAACGAAGACATTCAGAAAACA
CAACATACGAAGCAACTTTACCATTACCACCATTGAAAGTTCCAAAACTC
ATCTCTTCAACTAGCAGTCTTCCACCACCACCTCCCCTGGTCACACCAGG
TCGAGGTCACTCTTGCACATCTGATGATTGCAAATACTGCTCAGGATTGA
CTAATCTGGATATTGCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGA
TACTCCAAAGCGAAAGCATCCAGTTCATACGAAACGCCTTACTCACCAAA
CCTTCCATCTCCAGTCTGCAAGTCTTCAACATTCGATCTTGCATACAAAC
CACCAAGTCCTTCAGGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCA
CCATCAAGCAGTACTACAAGCGAATCATCAACTAGCTCCACTAAAGATTT
GGGAATTAAATACCAATGTCAAGTCTGTCATAAATCTTATTCACACCCTC
GACTTTTAAATCGTCACCTTCAATCACACACACCCTACAAAAAACACCAC
TGCCCTCGCTGCCGCAAAGGATTTAATGATGCTTTTGATCTGAAAAGACA
CATTCGAACACACACTGGAATCAAACCATTTCAATGTCGAATGTGTGAAA
AATCATTCACCCAGGTAAGATACTTTGAGTTTCTTATTTAGAAAGCCCAT
AGTTAGTAGACAAAGTGCCAACAGAGCATAAATACAACATTTTAAGATTA
ACAACTACACAACAGCATCTTCTTTTTGTTTTTTTCAGAGATGTTCATTG
GAAGCTCACATGACAAGAGTACACAATGTTGTCCACAAGTTCGCTTTCCG
TGAACGCCGACCCAAGCTGTTTGTTTGTGAAGATTGTGGTGTCACCTTCC
CTGATAACAACAAGTTTCGTCAACATGAAAAAGAAAGCACATGCAGACCA
AACAAATCAAACTAAGAGTTTAGTATAACAGTTTTAGACAGTAAGATTGT
TTGTTTTATGTTTGTAATGTCCCTATTTCTCCTGCTCTCATTTTATTTGT
TTCAGATTCTCAATGTTGAGAAAGAGAGGAGAAACGTGTTGTCCCTGTAT
ATAAATTTTATTCTAAATACTTCAACTTATATTATAACGTATATATTACG
AAAATGTGGAACAAGAAAAGGGTTGGCGGCTGATTATCACTAATGACTTA
TATTAAGTCGTAAAATAGCCAGCCAACTAATTTGCCCTTTTGGGCAAACA
ATATTATTTTATAGGAAAGTCTTATTGTAAACAGTTCACTAACTTTTTGC
TACCGTTACAAAACTGTTCTAGTTCTATTTCAAACTCAAGAAATCAACGT
ATACAGCAACAGTTGTAACGCTAGCAAAAAGTTAAGTTATCGTATAATCA
TTTGTTTTCAATTTTATCGTATTGATTGTAAGAGCGTGAGAGTTTAATGC
GAGTGAGTGTTTAAAAGAGAGAAAGTGTGAGTTCGTGGACTTTAGTCAGT
GAGTGTGAATTTATATTAAGTAAGTTAGAGCGATCTTGAGAGGTACGTTT
AACAATAAGAGAAAGGGATGAGAGGTGATAAAAAAGTTGACTTACTGAGG
CAAGGTCAAAAATTATGACAGATTCTTTCCTGCGGTTTCTTTATCCAAAA
GCTTCTTTTGTTTGTCAAGTCGTCAACGACACTCCTTCCCTGTTCAAAAA
AAATTAAAACAATAAGAAAAGACATGACTGAGAGAGGGAGAGTGAGTGAG
TCATCATTAAAAAGCTATAACGATATCATATTAATCTCTATTGACAAAGT
ATATTAAGTTTAAGGACGTCCATCTATCGTTCATGAGAGTTTTTCAATAA
AACCACATCTACTCTATCATCTTTTGTTCAAAATAGGTGGAGCATGAGAA
AGTAGAAAGGAATTTCTTTTCTATTCACCCAATGCCGTTAGATGGCTCCG
AAATGTTATTAAACTTAATACCATCCTATTAAACATCTAAAAACTAACCA
TCAGATTACAACTCTTACGATGGTTCTTTGCGTCGAATATGAATATCATG
TAACAAAATCAACCGAGAGAAAGTTTCTTATCTTTGATAAAGCCGATAAC
GGTTTCGCCTATTTCTTTTCAGAAGTCTTTTGGGCCAAGTAATCATATCA
CCTCAGGTTGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048890-exon-scaffold_148-1575043694:31903..32316 | TCONS_00048890-exon-scaffold_148-1575043694:31903..32316 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1575043694:30717..31511 | TCONS_00048890-exon-scaffold_148-1575043694:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1575043694:27804..29178 | TCONS_00048890-exon-scaffold_148-1575043694:27804..29178 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1510915933:31903..32316 | TCONS_00048890-exon-scaffold_148-1510915933:31903..32316 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1510915933:30717..31511 | TCONS_00048890-exon-scaffold_148-1510915933:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1510915933:27804..29178 | TCONS_00048890-exon-scaffold_148-1510915933:27804..29178 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1491911889:31903..32316 | TCONS_00048890-exon-scaffold_148-1491911889:31903..32316 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1491911889:30717..31511 | TCONS_00048890-exon-scaffold_148-1491911889:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048890-exon-scaffold_148-1491911889:27804..29178 | TCONS_00048890-exon-scaffold_148-1491911889:27804..29178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:27804..32316 - |
Blast
BLAST of TCONS_00048890 vs. Swiss-Prot (Human)
Match: OVOL1 (Putative transcription factor Ovo-like 1 OS=Homo sapiens GN=OVOL1 PE=2 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 7.665e-39 Identity = 62/120 (51.67%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 997 GIKYQCQVCHKSYSHPRLLNRHLQSHTPYKKHHCPRCRKGFNDAFDLKRHIRTHTGIKPFQCRMCEKSFTQRCSLEAHMTRVHNVVHKFAFRERRPKLFVCEDCGVTFPDNNKFRQHEKE 1356
G + C+VC K++++ R+LNRH++ H K+H C C KGFND FDLKRH+RTHTG++P++C +C+K+FTQRCSLE+H+ ++H V K+A++ERR KL+VCE+CG T H KE
Sbjct: 115 GDLFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKE 234
The following BLAST results are available for this feature:
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