|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048830 ID=TCONS_00048830|Name=TCONS_00048830|organism=Clytia hemisphaerica|type=transcript|length=2138bp
GGAAAATCGTTAATATTATTTGTGGACTTTATTAAAAAGCAgcttttgaa
taaaattataatttttgttatttttggtaGTGATTTTTAACAGTCATTTA
CATTTTATAgtcaatttacaaaatttttcatagctccttttttatgattt
tcagaCCAAAAGTAGAAATAAAATCTACTGCTAACTTTACGAAACAAGCA
TTCCTGGAAAAGATCTGAGGTACCTTTCTGCCCCTTTTGGGTCTTCAAAT
TCAACCATTTGACACTATTATATTATTCtgattatttctttcttttcctt
CATAGCATGAAAAAGAATACTATTTTCGAAGCATTGTTTTTAGTCATTAC
ATGTATACCTTCACTTACGTTAGCAATCGAACCTATCACTGTTGGAATAG
CTGTTGTTGCTGGTGGGGGAGCAATTGCAGGGAAATGGGCATATTGTCAA
TTTAAAGAGTGTTGTACTCCAAAGTGGACAAATCATTCTTCACACACAAT
GACTGATTCATTTCGTGACAATTTGATTGGTCAACATTTAGTGACACACA
TTGTTGCGAAAAGTATACGAAAACATTTACAGCAGGAAAACCCTAAGAAA
GCTCTTGTTTTATCATTTCACGGATGGACTGGTTCAGGGAAAAATTTTGT
TGCTGACATAATAGCTAAGCACGTATACAAGAAAGGTGTACAGAGTAAAT
TCATAACCAAATATATAGCTGGAAATGATTTTCCACATAAAGACGAGTTA
AAACAATATAAGGATAGAGTAAAACGAGAGATTGTTGAGAAAACTAAAGC
TTGTGACcattcaatgtttatttttgatgaaattgaaaaaatgcctGCTG
GATTGATTGATGTTTTGAAAGCATTTATTGATTTCCATCAAGATGTCAAC
GGTGTTGATTTTCGTAAAAACATATTCATCTTTATTGGTAATACTGGTGG
AGATGAAATCAACAAAGAAGTATTCAAACACTTCCGGTCTGGAGAATCGA
GACAGGATATTACTTCCAAGCAAATGGAGTTTTTATTATCAATAGACGCT
TTCAATAATAATGGTGGACTTAAAGATGCCAATATTTTGCTGGCAGGTTT
AGTAGACTTTTTTGTACCATTCCTACCTATGGAAAGAGAACATGTAAAAC
AATGTGTACGAGCTGAATTAATTCGAAGAAATCATGCATTGAATGAAAAG
ATTGTGAATGAAGTAGCTAAAGAGATGGattattttcctaagaaaaatcC
AATGTTTTCAACTACTGGATGCAAGAAAGTTTCTAAAAAGATGGACTTAA
TTTTGGACTAATTTACACTCACTCACTAATACTGAATTAGTCAACTCTCT
TTAATTGGGTCTTCAACGTTCAAgggaccagggttttttattagaattat
ttaaaggtgaattaaaaaatagaaagacTTTTTAAAGAGAGAggcattca
tttttttttaatcatataaggattcgaattagagaaaaagaaTCGACTTA
GAGAGAGTTTGCTGAATATAATACAAAACCTACTTGACCACTTCTCTTGT
CCAACCAAATATTCTCtgtcaagaacatttttgtTGTCATCTAGAGCTAA
TGTAAGTTggtagttttttttaaagaactttaaaACTGCTATCTTGCTTA
AAAGGATTTTTCGATAATTTTGAATAGGTATAGATATTCTAAGTATTATT
TTAACGTATCTATAACAGATCCATTTACGGGTtaagataataaaaaatca
aaatccaactgtttgaatatttttacttttgtaAATAGTTTTGGAtgtag
aaaatttaaatttattcttcTCTTAATTTATCTTGAGGGTGTGTTTTGTG
TATTTACCCTAATGGCATTAGGCATGGCCAATCTCCATTTTAACCTCTTT
CGaatttttggcttgaaaagcTTTACTCTATTTTtgtcttcatttttgaa
atttctcctATCATTTATCATAAAATGCTGTCTAATTTTTAAAACGTAGA
AAATCGAgaataaaaattcttaaaaattgtaaaatgttataGCAAAAAGT
CAATTTTAGGTGGACATATTTTAGATCTTTATACTATGAGGGTACTTAAC
TGTAAAGGAACATTTTTACTTAAGATGATATTCTATGG Run BLAST on NCBI protein sequence of TCONS_00048830-protein >TCONS_00048830-protein ID=TCONS_00048830-protein|Name=TCONS_00048830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MKKNTIFEALFLVITCIPSLTLAIEPITVGIAVVAGGGAIAGKWAYCQFK
ECCTPKWTNHSSHTMTDSFRDNLIGQHLVTHIVAKSIRKHLQQENPKKAL
VLSFHGWTGSGKNFVADIIAKHVYKKGVQSKFITKYIAGNDFPHKDELKQ
YKDRVKREIVEKTKACDHSMFIFDEIEKMPAGLIDVLKAFIDFHQDVNGV
DFRKNIFIFIGNTGGDEINKEVFKHFRSGESRQDITSKQMEFLLSIDAFN
NNGGLKDANILLAGLVDFFVPFLPMEREHVKQCVRAELIRRNHALNEKIV
NEVAKEMDYFPKKNPMFSTTGCKKVSKKMDLILD Run BLAST on NCBI transcript from alignment at scaffold_147:228314..231812+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048830 ID=TCONS_00048830|Name=TCONS_00048830|organism=Clytia hemisphaerica|type=transcript|length=3499bp|location=Sequence derived from alignment at scaffold_147:228314..231812+ (Clytia hemisphaerica)
GGAAAATCGTTAATATTATTTGTGGACTTTATTAAAAAGCAgcttttgaa
taaaattataatttttgttatttttggtaGTGATTTTTAACAGTCATTTA
CATTTTATAgtcaatttacaaaatttttcatagctccttttttatgattt
tcagaCCAAAAGTAGAAATAAAATCTACTGCTAACTTTACGAAACAAGCA
TTCCTGGAAAAGATCTGAGGTACCTTTCTGCCCCTTTTGGGTCTTCAAAT
TCAACCATTTGACACTATTATATTATTCtgattatttctttcttttcctt
CATAGCATGAAAAAGAATACTATTTTCGAAGCATTGTTTTTAGTCATTAC
ATGTATACCTTCACTTACGTTAGCAATCGAACCTATCACTGTTGGAATAG
CTGTTGTTGCTGGTGGGGGAGCAATTGCAGGTAATTGATTTCAGGAGGAG
AGAATTTGTGTTGAAAAACCACCTGTCTGTAATTCTTATATCAAATATAA
TTTAGGCTGATTCAAGattgcaaaatgttttttcttattaGCCCATTAAA
TGCCACTTCCATTGTATGAGATTGCTCTTGCTCAATTTCTTTGGTACTTG
AATTACTAGCACTGCTACCCATATGCCACCCTGTTTTTTTTTACCCTACC
CAAGATTGTCGAGATTGGCATTTCTATCTTAATTTTGGTGTGTACGCACA
TTTCAAACCAAGGATGGCATTTAAAGTTCTAACCAGACTTCACACATTCA
TTGACTTTTTGAAACTTCAGGCCTTTGTGAATACTTGTCTCAAAACTCCT
GTCAATCCCATTTTGGGGGGGAATAGGGAAGTGTTGTTGGAAGCTCAGGG
GAGTTTTTGGAACTGAAGgcaaaagtggattttcacatTCACTCAAATTA
TTCtaacaatatttttatttcatatatTGAAAGAGATACACAAGAAGGAA
ATTaggcaaaaaatagttttgataAGGTATTTAAGAAATTTTACATTTCT
ATTTATTACAGGGAAATGGGCATATTGTCAATTTAAAGAGTGTTGTACTC
CAAAGTGGACAAATCATTCTTCACACACAATGACTGATTCATTTCGTGAC
AATTTGATTGGTCAACATTTAGTGACACACATTGTTGCGAAAAGTATACG
AAAACATTTACAGCAGGAAAACCCTAAGAAAGCTCTTGTTTTATCATTTC
ACGGATGGACTGGTTCAGGGAAAAATTTTGTTGCTGACATAATAGCTAAG
CACGTATACAAGAAAGGTGTACAGAGTAAATTCATAACCAAATATATAGC
TGGAAATGATTTTCCACATAAAGACGAGTTAAAACAATATAAGGATAGAG
TAAAACGAGAGATTGTTGAGAAAACTAAAGCTTGTGACcattcaatgttt
atttttgatgaaattgaaaaaatgcctGCTGGATTGATTGATGTTTTGAA
AGCATTTATTGATTTCCATCAAGATGTCAACGGTGTTGATTTTCGTAAAA
ACATATTCATCTTTATTGGTAATACTGGTGGAGATGAAATCAACAAAGAA
GTATTCAAACACTTCCGGTCTGGAGAATCGAGACAGGATATTACTTCCAA
GCAAATGGAGTTTTTATTATCAATAGACGCTTTCAATAATAATGGTGGAC
TTAAAGATGCCAATATTTTGCTGGCAGGTTTAGTAGACTTTTTTGTACCA
TTCCTACCTATGGAAAGAGAACATGTAAAACAATGTGTACGAGCTGAATT
AATTCGAAGAAATCATGCATTGAATGAAAAGATTGTGAATGAAGTAGCTA
AAGAGATGGattattttcctaagaaaaatcCAATGTTTTCAACTACTGGA
TGCAAGAAAGTTTCTAAAAAGATGGACTTAATTTTGGACTAATTTACACT
CACTCACTAATACTGAATTAGTCAACTCTCTTTAATTGGGTCTTCAACGT
TCAAgggaccagggttttttattagaattatttaaaggtgaattaaaaaa
tagaaagacTTTTTAAAGAGAGAggcattcatttttttttaatcatataa
ggattcgaattagagaaaaagaaTCGACTTAGAGAGAGTTTGCTGAATAT
AATACAAAACCTACTTGACCACTTCTCTTGTCCAACCAAATATTCTCtgt
caagaacatttttgtTGTCATCTagacccggggggggcactgggtttgcg
gactgacggtatgtgcgggccaaaaattggcttttaaaattgcaccctta
cagtgcagcaaaaatcagtgaaaatcatatccttagagtgcattttcccc
caaattttcgatccctttcgtgcaaaaaattcttgcatttttggtcaaaa
tatttagatttttcaagaattttctgaaatttctacccttacagtgcatc
tctagtttttccgacccttacagtgcattttaaacatattggaaaaggta
cccttaggacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
TCTAGAGCTAATGTAAGTTggtagttttttttaaagaactttaaaACTGC
TATCTTGCTTAAAAGGATTTTTCGATAATTTTGAATAGGTATAGATATTC
TAAGTATTATTTTAACGTATCTATAACAGATCCATTTACGGGTtaagata
ataaaaaatcaaaatccaactgtttgaatatttttacttttgtaAATAGT
TTTGGAtgtagaaaatttaaatttattcttcTCTTAATTTATCTTGAGGG
TGTGTTTTGTGTATTTACCCTAATGGCATTAGGCATGGCCAATCTCCATT
TTAACCTCTTTCGaatttttggcttgaaaagcTTTACTCTATTTTtgtct
tcatttttgaaatttctcctATCATTTATCATAAAATGCTGTCTAATTTT
TAAAACGTAGAAAATCGAgaataaaaattcttaaaaattgtaaaatgtta
taGCAAAAAGTCAATTTTAGGTGGACATATTTTAGATCTTTATACTATGA
GGGTACTTAACTGTAAAGGAACATTTTTACTTAAGATGATATTCTATGG Coding sequence (CDS) from alignment at scaffold_147:228314..231812+ >TCONS_00048830 ID=TCONS_00048830|Name=TCONS_00048830|organism=Clytia hemisphaerica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_147:228314..231812+ (Clytia hemisphaerica)
ATGAAAAAGAATACTATTTTCGAAGCATTGTTTTTAGTCATTACATGTAT
ACCTTCACTTACGTTAGCAATCGAACCTATCACTGTTGGAATAGCTGTTG
TTGCTGGTGGGGGAGCAATTGCAGGGAAATGGGCATATTGTCAATTTAAA
GAGTGTTGTACTCCAAAGTGGACAAATCATTCTTCACACACAATGACTGA
TTCATTTCGTGACAATTTGATTGGTCAACATTTAGTGACACACATTGTTG
CGAAAAGTATACGAAAACATTTACAGCAGGAAAACCCTAAGAAAGCTCTT
GTTTTATCATTTCACGGATGGACTGGTTCAGGGAAAAATTTTGTTGCTGA
CATAATAGCTAAGCACGTATACAAGAAAGGTGTACAGAGTAAATTCATAA
CCAAATATATAGCTGGAAATGATTTTCCACATAAAGACGAGTTAAAACAA
TATAAGGATAGAGTAAAACGAGAGATTGTTGAGAAAACTAAAGCTTGTGA
CcattcaatgtttatttttgatgaaattgaaaaaatgcctGCTGGATTGA
TTGATGTTTTGAAAGCATTTATTGATTTCCATCAAGATGTCAACGGTGTT
GATTTTCGTAAAAACATATTCATCTTTATTGGTAATACTGGTGGAGATGA
AATCAACAAAGAAGTATTCAAACACTTCCGGTCTGGAGAATCGAGACAGG
ATATTACTTCCAAGCAAATGGAGTTTTTATTATCAATAGACGCTTTCAAT
AATAATGGTGGACTTAAAGATGCCAATATTTTGCTGGCAGGTTTAGTAGA
CTTTTTTGTACCATTCCTACCTATGGAAAGAGAACATGTAAAACAATGTG
TACGAGCTGAATTAATTCGAAGAAATCATGCATTGAATGAAAAGATTGTG
AATGAAGTAGCTAAAGAGATGGattattttcctaagaaaaatcCAATGTT
TTCAACTACTGGATGCAAGAAAGTTTCTAAAAAGATGGACTTAATTTTGG
ACTAAATGAAAAAGAATACTATTTTCGAAGCATTGTTTTTAGTCATTACA
TGTATACCTTCACTTACGTTAGCAATCGAACCTATCACTGTTGGAATAGC
TGTTGTTGCTGGTGGGGGAGCAATTGCAGGGAAATGGGCATATTGTCAAT
TTAAAGAGTGTTGTACTCCAAAGTGGACAAATCATTCTTCACACACAATG
ACTGATTCATTTCGTGACAATTTGATTGGTCAACATTTAGTGACACACAT
TGTTGCGAAAAGTATACGAAAACATTTACAGCAGGAAAACCCTAAGAAAG
CTCTTGTTTTATCATTTCACGGATGGACTGGTTCAGGGAAAAATTTTGTT
GCTGACATAATAGCTAAGCACGTATACAAGAAAGGTGTACAGAGTAAATT
CATAACCAAATATATAGCTGGAAATGATTTTCCACATAAAGACGAGTTAA
AACAATATAAGGATAGAGTAAAACGAGAGATTGTTGAGAAAACTAAAGCT
TGTGACcattcaatgtttatttttgatgaaattgaaaaaatgcctGCTGG
ATTGATTGATGTTTTGAAAGCATTTATTGATTTCCATCAAGATGTCAACG
GTGTTGATTTTCGTAAAAACATATTCATCTTTATTGGTAATACTGGTGGA
GATGAAATCAACAAAGAAGTATTCAAACACTTCCGGTCTGGAGAATCGAG
ACAGGATATTACTTCCAAGCAAATGGAGTTTTTATTATCAATAGACGCTT
TCAATAATAATGGTGGACTTAAAGATGCCAATATTTTGCTGGCAGGTTTA
GTAGACTTTTTTGTACCATTCCTACCTATGGAAAGAGAACATGTAAAACA
ATGTGTACGAGCTGAATTAATTCGAAGAAATCATGCATTGAATGAAAAGA
TTGTGAATGAAGTAGCTAAAGAGATGGattattttcctaagaaaaatcCA
ATGTTTTCAACTACTGGATGCAAGAAAGTTTCTAAAAAGATGGACTTAAT
TTTGGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048830-exon-scaffold_147-1491911889:228314..228743 | TCONS_00048830-exon-scaffold_147-1491911889:228314..228743 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1510915933:228314..228743 | TCONS_00048830-exon-scaffold_147-1510915933:228314..228743 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1575043694:228314..228743 | TCONS_00048830-exon-scaffold_147-1575043694:228314..228743 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1491911889:229325..230482 | TCONS_00048830-exon-scaffold_147-1491911889:229325..230482 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1510915933:229325..230482 | TCONS_00048830-exon-scaffold_147-1510915933:229325..230482 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1575043694:229325..230482 | TCONS_00048830-exon-scaffold_147-1575043694:229325..230482 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1491911889:231263..231812 | TCONS_00048830-exon-scaffold_147-1491911889:231263..231812 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1510915933:231263..231812 | TCONS_00048830-exon-scaffold_147-1510915933:231263..231812 | Clytia hemisphaerica | exon |
| TCONS_00048830-exon-scaffold_147-1575043694:231263..231812 | TCONS_00048830-exon-scaffold_147-1575043694:231263..231812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:228314..231812 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00048830 vs. Swiss-Prot (Human)
Match: TOR1A (Torsin-1A OS=Homo sapiens GN=TOR1A PE=1 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 3.430e-82 Identity = 132/327 (40.37%), Postives = 200/327 (61.16%), Query Frame = 1
Query: 331 ALFLVITCIPSLTLAIEPITXXXXXXXXXXXXXXKWAYCQFKECCTPKWTNHSSHTMTDSFRDNLIGQHLVTHIVAKSIRKHLQQENPKKALVLSFHGWTGSGKNFVADIIAKHVYKKGVQSKFITKYIAGNDFPHKDELKQYKDRVKREIVEKTKACDHSMFIFDEIEKMPAGLIDVLKAFIDFHQDVNGVDFRKNIFIFIGNTGGDEINKEVFKHFRSGESRQDITSKQMEFLLSIDAFNN-NGGLKDANILLAGLVDFFVPFLPMEREHVKQCVRAELIRRNHALNEKIVNEVAKEMDYFPKKNPMFSTTGCKKVSKKMDLILD 1308
A+ ++ PS+ A+EPI++G+A+ YC F ECC K + S + DNL GQHL I+ ++ + PKK L LS HGWTG+GKNFV+ IIA+++Y+ G+ S ++ ++A FPH + YKD+++ I AC S+FIFDE++KM AGLID +K F+D++ V+GV ++K +FIF+ N G + I +RSG+ R+DI K +E LS+ FNN N G ++++ L+D+FVPFLP+E +H+K C+R E+ R + ++E IV+ VA+EM +FPK+ +FS GCK V K+D D
Sbjct: 6 AVLGLLLLAPSVVQAVEPISLGLALAGVLTGYIYPRLYCLFAECCGQK-RSLSREALQKDLDDNLFGQHLAKKIILNAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGVSYQKAMFIFLSNAGAERITDVALDFWRSGKQREDIKLKDIEHALSVSVFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSRVAEEMTFFPKEERVFSDKGCKTVFTKLDYYYD 331
The following BLAST results are available for this feature:
|
