TCONS_00048689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048689
Unique NameTCONS_00048689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048689 ID=TCONS_00048689|Name=TCONS_00048689|organism=Clytia hemisphaerica|type=transcript|length=1322bp
TTGTAGTACAAACTAAAAGAAACAATACATTAATCAGCTCAACACAAAAA
TGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGTGATAAATTCCGA
GGCGAAAGAAACGATTATGATAACAGGAGACCTGCACCCAGAGGATACAA
TGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATCGCAAGAGAGATT
ATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGAGACAATTTTCAG
AATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAACGATGGgGATGA
TAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCCTCCAGAGA
AACCGAACACTGGGTCACCCCATTTGATGagtttcaaagattttgtttcC
CAACAAGAGGACGACATCAATGAGGAGCAAGCTGTCCAAAGATACCAAGA
GTACAAAGTGGAGTTCAAGAGAACGCAAATAAACGACTTCTTTGTCATCA
AGAAAAAGGATGAATGGTTTGAAGAGAGGTATCATCCAGTCAAAGGCCAA
AAGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTATCTT
TCTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAGATCA
CTTATAGTCCTGCCGTACTCAAACTATTGGATCGAGTTGTCATTTTGCTC
GAGGGAGGAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTC
CATCACTGGTGCCAATTCACAACcaGCTGTTGCGAATGTTGCCAAAcctg
aagaaaagaaagaagaaccCAAGCCTGCAGGTGACGAGAAGCCTAAAGAT
TACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGATTGGGAA
AGAGCCTTTACCCCCTGGCATGGAcgaagatgatgatgatatcAAACCCC
CTGGTCTTGACGAAGAAGAAGACAAAGGAACCCAAGAAAGAGGAAATTGA
CGAGACACCAAAGGAGTTCGTTTACGAAGGCGTTTGGCCCCGACGCCCAG
TCTCAATTTTCATCAGAAACGCCCCCTCCAACATCCTTCGCTCTGACATT
GTTAACGTTTGTAAACCCTACCCTGGATTCCTTCGAGTGGCAATGTCAGA
TGCCGCACCAGAGAGAAGATATAGTCGTCGTGCTTGGGTTTCTTTCGGAC
ATGACACCAATATCAAAGATGTGTGCTGGAACCTCAGTAATATTCGCGTT
AGGGAACTGGAACTTAGTCCTTCCGTCAACCGTGATGTCACGAACCGCAT
TCGACCAATCAACGGTATGTAT
Run BLAST on NCBI

protein sequence of TCONS_00048689-protein

>TCONS_00048689-protein ID=TCONS_00048689-protein|Name=TCONS_00048689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MGDSDEDRRGGRRDKFRGERNDYDNRRPAPRGYNDRGRGDRGGWQDRKRD
YYGNRGDNRGDRRDNFQNRGGSPPYKRNKNDGDDNQWNRGGDSNAMNPPE
KPNTGSPHLMSFKDFVSQQEDDINEEQAVQRYQEYKVEFKRTQINDFFVI
KKKDEWFEERYHPVKGQKRQSFIRHGHRRRLRIFLDLWEQGFIDELSLQI
TYSPAVLKLLDRVVILLEGGTEEDLKALEEAPKSITGANSQPAVANVAKP
EEKKEEPKPAGDEKPKDYTYDADVTEEDDEGIGKEPLPPGMDEDDDDIKP
PGLDEEEDKGTQERGN
Run BLAST on NCBI

transcript from alignment at scaffold_145:396311..402735-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048689 ID=TCONS_00048689|Name=TCONS_00048689|organism=Clytia hemisphaerica|type=transcript|length=6425bp|location=Sequence derived from alignment at scaffold_145:396311..402735- (Clytia hemisphaerica)
TTGTAGTACAAACTAAAAGAAACAATACATTAATCAGCTCAACACAAAAA
TGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGTGATAAATTCCGA
GGCGAAAGAAACGATTATGATAACAGGAGACCTGCACCCAGAGGATACAA
TGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATCGCAAGAGAGATT
ATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGAGACAATTTTCAG
AATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAACGATGGGTAATA
CTTTTATTAAGCTCAAATTTTGATTTGCTGTTTATTCACTAGCAGTTCTA
CTTTACAGAAAGATAACGTTTGGNAAATTTTGATTTGCTGTTTATTCACT
AGCAGTTCCACTTTACAGAAAGATAACGTTTGGATTTAATGTTATTAATA
TGAAATGTAATATCCAAGCGTATCAATACAATGACTTTAGGCATTCGACA
TTCATCTACCGTGGTTAAAAATATTTCAATCAACAATTTTTTTGTGACCA
ACAATTGATTTGCCAACAAAATTTTTTTATTAAAGTAAATGTCGAAAGTG
TGTCAGAAAATGAATGTAAAACTGATTTTGACCATTTTTAAGCCCTAATT
TGCTTTATAATAATTTTTTTCATATTTCAGGGATGATAACCAATGGAACA
GAGGAGGAGACTCAAATGCTATGAACCCTCCAGAGAAACCGTAATATAAC
TTATGTTTCTTTCTTTCTGACTGCTACAGACTAGGCTAGCTAAAGATCTC
AATAAATTCCAATAATGGCATTTTTGTCTAAAGTTTCAAAAGTTGAATGT
TTCTCTTCAACCTTGTTCTTCTAAAGGAAAATTCTATTTTTGAACCATGT
AGGAAGATGATTAATATGAAAATGCATATAGGCAATTAGGAAAAGGCAAT
TGATTTTAAAACTTGGCAAAATCCAATCAAAAGTAAAAGTCTCATTTCTA
ACATCTCAGGAACACTGGGTCACCCCATTTGATGAGTTTCAAAGATTTTG
TTTCCCAACAAGAGGACGACATCAATGAGGAGCAAGCTGTCCAAAGATAC
CAAGAGTACAAAGTGGAGTTCAAGAGAACGCAAATAAACGACTTCTTTGT
CATCAAGAAAAAGGATGAATGGTTAGTATTCAAAACTCATTTAGCCTTTC
TAATTTTTTATCATAACATGGTTTCAGCCCCCCCCCCCCCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCTAGCTGTTTTTATGGAGGCTCTTGTGGCTGTGTATATTTTCCAA
ATTGAATATTTCAAAATTTTCAATTTATTCAGTTTGTTTTACCCCAGCAC
CCATTTTTCCCATCCGATTCTCTTGTTTCTTTTGTTTCCCATCACGTCAT
CTTTTGCTATATTTTTCAAATGTGATTGTTTTTATTTATAGCTGCCATCT
TTATAACATAAAAACAAAGCTTTTCTCATGTGAGTGCGCTTCTAAAACCT
CAGGATAAGAGTAAGCAAATATGATAGCTAGTTGTGTTTTTGGCTCTGTT
TAACCATTTAACACTCACACTCATAACTGATTACAATCTTCTGGTATACA
AAAGAACAAAAAGTGTCAATTCAAAAAAATTATTGGCTGAATGGGTACAC
CCTAACTCAAAGCAATTTCTCAAGGGGACCTAACTCGTTGGGGGCACCAT
GCTTCAATGGGGGCACCATGCTTCAATGGGGGCACCTAAAAAGTGGGCTG
AAACCATGATCATTTTTTGGTGAGGCTAAGGCCTATGCTCTCTAATTTGA
CTTGTGAGGCTGGTTATTTTGAGTTTTTTGAGTGGAACTATTCTACTTAG
TTATTGGCATTAACTTTTAGCTGATTTCTTTTAGAGCTGTGAAAATGAGA
GAAAGAAAGGGAAATTCTTCTGTTAATTTACTTTTTGACCAGTATTGCAT
TCTGACTTATTTTAGCGTTATGAATGCTCCTGAAATGCTGGAGAACTCAA
TCCATGACCCTAAATCAATTATAAAACCTCATCAAATTCAAACAATATGC
ATCTATTTATATACAGATTGCATTATACTCACATAATATATATTAAAAAT
ATTAGTTTACCACATGTAACATTCCAAGCATAGTTTAAGCAGCTTGAGTG
TTGGCCCGCTGTCTCAGGTCTATGATGGGACAGTGGGCCTGGCTTTTAAT
GACTTTCACCATACTTGACAAAAATGGCTTGGATGTGATGGATTCTGTTT
TTGTTGCGGTGAGGTAATGTGTTGAAATCTAAATGATAAGTTCTTCTGAA
AACATTGTAAACACTATAGTCAGGTTAAGTTTTACTTTCTACAAACATAG
AGAAAGGTGTCGTATGAAATGGATTTAAACATAGACAACAGGGTGTACAA
TGTTCATTTACTTTCCGATACGAATACCTGATGGATTTCAACAAAGCTTT
AAGTACCTGGAAATTGTTTATTGATTTACAAAGGAATTATCGGATTAGCA
ATCCACATGAATATGAAATTATCTTGATTAGTAACTATATCTTTATTAAT
TGCAACTTTTCAATTCTTCTTGAAACAAATAATGAAAATGTAGGTTTGAA
GAGAGGTATCATCCAGTCAAAGGCCAAAAGCGTCAATCTTTCATCCGACA
TGGTCACCGTAGAAGATTGCGTATCTTTCTTGATTTGTGGGAGCAGGGCT
TCATTGATGAGCTGAGCCTTCAGATCACTTATAGTCCTGCCGTACTCAAA
CTATTGGATCGAGGTAGGCATTCCTTATGAGTTTTGGAAAATTTTGGGCC
ATTCTGACAGTATCATTTCATGGTTCAGATGCTAACCCTGAGAACTCTAA
TGTAGCTATTCCAAGACTCGACATCATATAATTTAAAAAAAAAAAGATAT
TGAGTTATTTCAATTAATTCATTTCTTTTAACTTCTATTTCCAGTTGTCA
TTTTGCTCGAGGGAGGAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCT
CCGAAGTCCATCACTGGTGCCAATTCACAACGTAATAAGAAAGCTTTAAT
TAAGGCTACATACACTACATGACAATATTGTCAAGCAAACAATATTTTTG
AATATGGCTTGCCAATATATTGTGCAGTCTAAATAGCCCTTTATGATATC
TATGAATGATACACTAGTCAAATACAATTAGTGTTCACCTAATGCAAGCA
GTTAGTTTGAATAGTAATCTTAACTAGCTTTTCATCTTCTGTGTACTTAA
AGCAAATGTCATTTGCTAAGATTACTACACTTAATGTCTTAGGGAAAAAT
TGAGATTTAAAATCGATTAAAAGTCACAAGAAAGCTGGGTTTTAAACAAA
TTAAACTTTGAATTTTGAAAATCCAAGTAATTCCGACCCTCTTTTTAAAA
TTTGAATTAAAAATCGAATTTTATTTTTTATAGCAGCTGTTGCGAATGTT
GCCAAACCTGAAGAAAAGAAAGAAGAACCCAAGGTATGGGGTTAAGTTTT
GTACTACTCTGGTTGGGAATGATTCTTTTAGTTATTTTAATCCGGTTTTG
CTTGGGTGATACTGTCACTAAAAGTTCTTCTGCCCAATAGAGTTTTTCTC
TGCAAGTTTAAAAATACTTTTTTTCTCAAAACTACCTATTATAAAAATCT
TTCAAAAATAATTGATTTCTTCTGTTATTTCTTAAACTGTAAAGCCTGCA
GGTGACGAGAAGCCTAAAGATTACACTTATGATGCTGATGTTACAGAAGA
AGACGATGAGGGGATTGGGAAAGAGCCTTTACCCCCTGGCATGGACGAAG
ATGATGATGATATCAAACCCCCTGGTCTTGACGAAGAAGAAGACAAAGGT
CTGACCATTTCACTCAATGCCTCTGTAGATAGGGGTGGGTGTTAAGTTGC
AATGTTAAACCTATTAGCCCCAAGCTTTTTTGACTTTTGTATTCCCAGGG
GGGGGGGTAGAATCTACCGCCCTCGATTATTTTCGATCTAGAAGAGCTAT
GGCCATGAAATTCGGTACAGATGTTCTCCATCATGATACAATTTTCCAGG
AAGAAAAAAAAATTGATGACGTTTTTCAAAAACTGATGACGTCATCACAA
AATTTCCACCTGTCGGAAAAAAGCCCAAAGATATGGTGTACAAAAATGTC
TATTACAGTCGAACCAATAAAGATATTTCAATTCTGTTTGAAGATTCTGA
AAGGTAAAAGACTGTTCTTTAAAATAATTGCCGGTTTTGCAATTTCCATG
AAGAGTTTTTCTTAAAATCTATGCTGAAGATGAGTAAAATTTTCAAAATT
TGATGACGTTCATCATTTTCAAAAATTTTCTTTTGATTTTTTAAATTTGT
ATTATCAATGCCTATCACGTGTCAAAATTTGAAAATGATTGAATTAATAG
TTTAGAAGTTATCAGCACTTTAAAATTTTGAGTTTTAAGCGATTTTAACT
GGGTTTTATGTCAAGTTTCACAATAAAGTCATAAAACCTGATCTGGACAA
CCTATGACCCTTAAATTTTGCACAAGTACTCTTAATAAGATTTTATTAAA
AGTCAGAAAGTTTCAAGTCGTTTAAAAAAATTTTCTCCGAGATATAAACA
AAATAACTCCAGCGTGGTAGATTCTACCCCCCCCCTGGGGCTAATAGGGT
TAAACCTTCTCCAGACAGGTTTGCTAAAATCCATTTTCTGTCTCAGATGG
ATCAATGTTATTTGGGGGAAATTGGTTGGCAGAATTAGCTCAAGAGTATT
ATTATATGTAAAGTGTTTTCAATTTTTAAACAAATTACTTTTCTATTCTC
TTGTTTTAGATAAAGAGATGAAAGAGGAGGTGAGGATTTGAATTTTTAAC
CCTCCAAAGTCCACTCTCTTACTACAATCATTTCATTTCTTTCTTTGCAA
AAGCCACGATGCCATTTTGTTTCTTTCTTTCAAAAGGGTTTTTTATAAAA
AGGCATCCGCAGCTCGATTAAAACTGGCATTTCATGGTTATGTTTAGTTT
TTAGTTCTAGTAGCGTCGAAGGGCTCTCAACTGATGGGTTGAGATTGAAT
AACGTCATTGAAGAGCTTAGCGGTCTCGTGTCTACTAAAGTTTTAAAAAT
TATACCTTGTTGAACTTTGTTTAACTAACATATTCTAAAAGATTGGATGT
ATGTTTATTTCATTGACTGATTTAGGAACCCAAGAAAGAGGAAATTGACG
AGACACCAAAGGAGTTCGTTTACGAAGGCGTTTGGCCCCGACGCCCAGTC
TCAATTTTCATCAGAAACGCCCCCTCCAACATCCTTCGCTCTGACATTGT
TAACGTTTGTAAACCCTACCCTGGATTCCTTCGAGTGGCAATGTCAGATG
CCGCACCAGAGAGAAGGTACGTCAGCTGTTGTTTACGGATATCTTTCATG
AGATTTCCCTTTGCATTTTGCTTGATGTCTTTTCTACATCACTTCTAGTT
TAAAATGTGTTCTTCTGTGTTCCTTCAACCTTCTATAATGATAAGTACGT
ATTTCTCTTCAAAAATTAAAAACAACCATTACACTGTGTTTCACGCTTAA
GGCGATCATCAGATGTGGATAAAAATTGTTTTTAATTTTTGAAGGGAAAT
ATATTAAATTGAATTTAGCTCTACTTGTTATCGAGCACTATTTTCTTCAC
CGTTCTAGATGATTTGATTTGATGATAAGGACATAATGAGAATTAACTTG
CGATAAAATCTGAAGAGTAAACAAAAAGTGGAGTATGCTTCTTCTAGCGT
AAGCCTAAGCCTAATTAGTTTTTCTCTCGTTTTACTCTCTTCTGATTTTC
TTTCTTCTTCAACAATTATAGATATAGTCGTCGTGCTTGGGTTTCTTTCG
GACATGACACCAATATCAAAGATGTGTGCTGGAACCTCAGTAATATTCGC
GTTAGGGAACTGGAACTTAGTCCTTCCGTCAACCGTGATGTCACGAACCG
CATTCGACCAATCAACGGTATGTAT

Coding sequence (CDS) from alignment at scaffold_145:396311..402735-

>TCONS_00048689 ID=TCONS_00048689|Name=TCONS_00048689|organism=Clytia hemisphaerica|type=CDS|length=7608bp|location=Sequence derived from alignment at scaffold_145:396311..402735- (Clytia hemisphaerica)
GAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCCTAAAGAT
TACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGATTGGGAA
AGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATCAAACCCC
CTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGTTGCCAAA
CCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGAGGGAGGA
ACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCATCACTGG
TGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAGGCCAAAA
GCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTATCTTTC
TTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAGATCACT
TATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGGGTCACCC
CATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACGACATCAA
TGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAGTTCAAGA
GAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGAATGGGAT
GATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCCTCCAGA
GAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGTGATAA
ATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCACCCAGAG
GATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATCGCAAG
AGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGAGACAA
TTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAACGATG
GGAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCCTAAAGA
TTACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGATTGGGA
AAGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATCAAACCC
CCTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGTTGCCAA
ACCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGAGGGAGG
AACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCATCACTG
GTGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAGGCCAAA
AGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTATCTTT
CTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAGATCAC
TTATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGGGTCACC
CCATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACGACATCA
ATGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAGTTCAAG
AGAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGAATGGGA
TGATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCCTCCAG
AGAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGTGATA
AATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCACCCAGA
GGATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATCGCAA
GAGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGAGACA
ATTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAACGAT
GGGAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCCTAAAG
ATTACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGATTGGG
AAAGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATCAAACC
CCCTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGTTGCCA
AACCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGAGGGAG
GAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCATCACT
GGTGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAGGCCAA
AAGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTATCTT
TCTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAGATCA
CTTATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGGGTCAC
CCCATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACGACATC
AATGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAGTTCAA
GAGAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGAATGGG
ATGATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCCTCCA
GAGAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGTGAT
AAATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCACCCAG
AGGATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATCGCA
AGAGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGAGAC
AATTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAACGA
TGGGAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCCTAAA
GATTACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGATTGG
GAAAGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATCAAAC
CCCCTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGTTGCC
AAACCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGAGGGA
GGAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCATCAC
TGGTGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAGGCCA
AAAGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTATCT
TTCTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAGATC
ACTTATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGGGTCA
CCCCATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACGACAT
CAATGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAGTTCA
AGAGAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGAATGG
GATGATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCCTCC
AGAGAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGTGA
TAAATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCACCCA
GAGGATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATCGC
AAGAGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGAGA
CAATTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAACG
ATGGGAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCCTAA
AGATTACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGATTG
GGAAAGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATCAAA
CCCCCTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGTTGC
CAAACCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGAGGG
AGGAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCATCA
CTGGTGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAGGCC
AAAAGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTATC
TTTCTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAGAT
CACTTATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGGGTC
ACCCCATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACGACA
TCAATGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAGTTC
AAGAGAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGAATG
GGATGATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCCTC
CAGAGAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGTG
ATAAATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCACCC
AGAGGATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATCG
CAAGAGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGAG
ACAATTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAAC
GATGGGAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCCTA
AAGATTACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGATT
GGGAAAGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATCAA
ACCCCCTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGTTG
CCAAACCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGAGG
GAGGAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCATC
ACTGGTGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAGGC
CAAAAGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTAT
CTTTCTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAGA
TCACTTATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGGGT
CACCCCATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACGAC
ATCAATGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAGTT
CAAGAGAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGAAT
GGGATGATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCCT
CCAGAGAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACGT
GATAAATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCACC
CAGAGGATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGATC
GCAAGAGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAGA
GACAATTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAAA
CGATGGGAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCCT
AAAGATTACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGAT
TGGGAAAGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATCA
AACCCCCTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGTT
GCCAAACCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGAG
GGAGGAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCAT
CACTGGTGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAGG
CCAAAAGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGTA
TCTTTCTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCAG
ATCACTTATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGGG
TCACCCCATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACGA
CATCAATGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAGT
TCAAGAGAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGAA
TGGGATGATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACCC
TCCAGAGAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGACG
TGATAAATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCAC
CCAGAGGATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGAT
CGCAAGAGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGAG
AGACAATTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAAA
ACGATGGGAACCCAAGAAAGAGGAAATTGACCTGCAGGTGACGAGAAGCC
TAAAGATTACACTTATGATGCTGATGTTACAGAAGAAGACGATGAGGGGA
TTGGGAAAGAGCCTTTACCCCCTGGCATGGACGAAGATGATGATGATATC
AAACCCCCTGGTCTTGACGAAGAAGAAGACAAAGCAGCTGTTGCGAATGT
TGCCAAACCTGAAGAAAAGAAAGAAGAACCCAAGTTGTCATTTTGCTCGA
GGGAGGAACAGAAGAGGATCTAAAAGCTTTAGAAGAAGCTCCGAAGTCCA
TCACTGGTGCCAATTCACAACGTTTGAAGAGAGGTATCATCCAGTCAAAG
GCCAAAAGCGTCAATCTTTCATCCGACATGGTCACCGTAGAAGATTGCGT
ATCTTTCTTGATTTGTGGGAGCAGGGCTTCATTGATGAGCTGAGCCTTCA
GATCACTTATAGTCCTGCCGTACTCAAACTATTGGATCGAGGAACACTGG
GTCACCCCATTTGATGAGTTTCAAAGATTTTGTTTCCCAACAAGAGGACG
ACATCAATGAGGAGCAAGCTGTCCAAAGATACCAAGAGTACAAAGTGGAG
TTCAAGAGAACGCAAATAAACGACTTCTTTGTCATCAAGAAAAAGGATGA
ATGGGATGATAACCAATGGAACAGAGGAGGAGACTCAAATGCTATGAACC
CTCCAGAGAAACCATGGGAGACAGTGACGAAGACAGACGTGGTGGTCGAC
GTGATAAATTCCGAGGCGAAAGAAACGATTATGATAACAGGAGACCTGCA
CCCAGAGGATACAATGATAGGGGAAGAGGTGATCGAGGTGGGTGGCAAGA
TCGCAAGAGAGATTATTATGGAAATCGCGGCGACAATCGTGGAGACAGGA
GAGACAATTTTCAGAATAGAGGAGGGAGCCCACCCTACAAGCGAAACAAA
AACGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030935XLOC_030935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048689-exon-scaffold_145-1575043694:402442..402735TCONS_00048689-exon-scaffold_145-1575043694:402442..402735Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:401996..402055TCONS_00048689-exon-scaffold_145-1575043694:401996..402055Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:401565..401726TCONS_00048689-exon-scaffold_145-1575043694:401565..401726Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:399523..399692TCONS_00048689-exon-scaffold_145-1575043694:399523..399692Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:399255..399341TCONS_00048689-exon-scaffold_145-1575043694:399255..399341Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:398803..398852TCONS_00048689-exon-scaffold_145-1575043694:398803..398852Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:398438..398591TCONS_00048689-exon-scaffold_145-1575043694:398438..398591Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:396920..397110TCONS_00048689-exon-scaffold_145-1575043694:396920..397110Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1575043694:396311..396464TCONS_00048689-exon-scaffold_145-1575043694:396311..396464Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:402442..402735TCONS_00048689-exon-scaffold_145-1510915933:402442..402735Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:401996..402055TCONS_00048689-exon-scaffold_145-1510915933:401996..402055Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:401565..401726TCONS_00048689-exon-scaffold_145-1510915933:401565..401726Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:399523..399692TCONS_00048689-exon-scaffold_145-1510915933:399523..399692Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:399255..399341TCONS_00048689-exon-scaffold_145-1510915933:399255..399341Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:398803..398852TCONS_00048689-exon-scaffold_145-1510915933:398803..398852Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:398438..398591TCONS_00048689-exon-scaffold_145-1510915933:398438..398591Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:396920..397110TCONS_00048689-exon-scaffold_145-1510915933:396920..397110Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1510915933:396311..396464TCONS_00048689-exon-scaffold_145-1510915933:396311..396464Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:402442..402735TCONS_00048689-exon-scaffold_145-1491911889:402442..402735Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:401996..402055TCONS_00048689-exon-scaffold_145-1491911889:401996..402055Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:401565..401726TCONS_00048689-exon-scaffold_145-1491911889:401565..401726Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:399523..399692TCONS_00048689-exon-scaffold_145-1491911889:399523..399692Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:399255..399341TCONS_00048689-exon-scaffold_145-1491911889:399255..399341Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:398803..398852TCONS_00048689-exon-scaffold_145-1491911889:398803..398852Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:398438..398591TCONS_00048689-exon-scaffold_145-1491911889:398438..398591Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:396920..397110TCONS_00048689-exon-scaffold_145-1491911889:396920..397110Clytia hemisphaericaexon
TCONS_00048689-exon-scaffold_145-1491911889:396311..396464TCONS_00048689-exon-scaffold_145-1491911889:396311..396464Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048689-proteinTCONS_00048689-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:396311..402735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
123.792	111.812	148.001	146.014	211.792	168.208	131.879	142.733	87.69	108.698	126.87	99.5506	127.87	127.341	119.157	129.114	143.404	122.501	51.4569	57.0819	97.999	115.401	81.1851	87.5309	131.195	129.291	58.6618	52.8767	64.7839	73.635
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021933DUF3546
Blast
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BLAST of TCONS_00048689 vs. Swiss-Prot (Human)
Match: SRRT (Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.038e-29
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 3 
Query: 1050 VSIFIRNAPSNILRSDIVNVCKPYPGFLRVAMSDAAPERRYSRRAWVSFGHDTNIKDVCWNLSNIRVRELELSPSVNRDVTNRIRPINGM 1319
             S+F+RN   NI R++I+++CK YPGF+RVA+S+  PERR+ RR WV+F    NIK++CWNL NIR+RE ELSP VNRD+T R+R ING+
Sbjct:  421 CSLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGI 510

HSP 2 Score: 115.931 bits (289), Expect = 1.652e-27
Identity = 54/122 (44.26%), Postives = 82/122 (67.21%), Query Frame = 2 
Query:  368 PHLMSFKDFVSQQEDDINEEQAVQRYQEYKVEFKRTQINDFFVIKKKDEWFEERYHPVKGQKRQSFIRHGHRRRLRIFLDLWEQGFIDELSLQITYSPAVLKLLDRVVILLEGGTEEDLKAL 733
            P + +FK+F+   +D ++E +AV+RY +YK++F+R Q+ DFF+  K +EWF  +YHP +  KR+   R   + RLR+FL L E G+ D L L I  + A++K+LD  VI +EGGTE DL+ L
Sbjct:  147 PVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLRVFLSLMETGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRIL 268
The following BLAST results are available for this feature:
BLAST of TCONS_00048689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRRT2.038e-2958.89Serrate RNA effector molecule homolog OS=Homo sapi... [more]
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