|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048594 ID=TCONS_00048594|Name=TCONS_00048594|organism=Clytia hemisphaerica|type=transcript|length=3013bp TGaaattcgattagttcgatggtTCGACTGACATCGTCTGGCTGGGtaga atttttttagaatttatttctCCGAGAGGACAAAAATCAAAAGTCCAAAT CTCATCTGGATGGATTCTTTCAAACCGAAATATTACTGATCAAAAAATGA AACAGCCCAATGTAAATATCATTCTTGTTGGTGAAATTTAAGTATCTAGA ATATACTTACAATAAAGGGGAGAATATCATACTTGACTTGACCTGCCatc ttgcttcacttttttggatACTTTGTTGTTTAAGCCCTGGGAAATAGTAT CTCGATAGTGAAAGTATGTAAACCCGTGGCAACTTTTTAAATACAAGGGG CagggttttttcaaaaaaaaactaccCGGATGAAAGCTCTGCTTCTGATT GGTTAAAGCTAACATcatactttcgatttcaaattcACGAAGTATACACC AAGCTCAGATCGCAAACTATAATAGCTGTTCCCAATATCATCATTAATAA ATCGCATCTGAGTATGATTGACGATAAGAAAGCAGCGTAGTTGTTGAAGA AGGAGGACTTGAATCAGCGTTCAAGGCAAGGTCTGACAGCGAGTTCATAT TCTATCTTGAAGTTTATCTTTGTTAGAGGTTGTTATACCGTTAAATTTGT GTTGAACCATGTCTTCAGAAAGTGAATTAGTTGATATGGCCAAATTGGCT GAACAAGCCGAAAGGTATGATGATATGGTGCAATTTATGACCCAACTTAC AGAGAAGAACCAAATTCTCACTGATGAACAGAGAAATTTACTCTCTGTCG CATTTAAAAATGTTGTTGGAGCTAGACGATCAGCATGGAGAATCATCAGC AGCATGGAGCAACGATGCATAGAAAAAGGGGAAGGAAATCAAGCCGAATT AGCAAAAAAATACAGGGAAGAAATTGAGAAAGAATTAGAGGCTCGTTGTC AAGAGGTCTTGAAACTTATCGATGATTCATTATTGAAAACTGTCGACCAA GGAGAACGCCCAGATGAAGCTAAAGTATTCTACCTTAAAATGAAAGGAGA TTATTACAGATACTTGGTCGAAGTAAAAGACACATCAAACCCAGAACGTG CGAAACTCGCAGAGCAATCAAAAGAAGCATACGGCAATGCCACAGAGGCT GCAGAGGGTCTTACAAACACTCATCCAATCAAATTGGGATTGGCATTAAA TTATTCTGTATTCCATTACGAGATTATGAATGACGGTACCAAAGCCTGTG AATTGGCAAAGAAAGCATTTGATGATGCTATTGCTGAATTAGATAGCTTG AAGGAAGATTCTTACAAGGATAGTACCTTAATTATGCAGCTACTTAGAGA CAATTTGACCTTGTGGACATCAGAGAATAACAAAGATGATGATCAAGACG AGTCGTGAGTCCGCCTTCATTTACATGTCTGACTATAAACACCAACAATC ACCCAGAAGCTCATTCAACTTTTgatgatattttacaaacacaCCACACC ACATCAATTATAATGTGGCTAAGACTTTTGAACTTGTAATTTATCATTTT GCAATGATATCTTCGATCAACTCCATGAAGGATTTACGCTGTTTTCTGAT TATGATAGAAtgcaatcaaattttgttatatGTATAATTTTGTGCTTTTA GTAGTTTTTATGTGCATCTTTTCACATTGTGCTCAAAAGCACAACTTTTC TCTGTCCCTGGCTGTCCCTagctttttctaaaattaatccAATAATAGAT GTTGTCTGGAATCTAATGACATTATTAGTTTTGTAATTTATTGTTTGATA AATAAGTATACTGAaatttagtgaatttttaaGTCCCAAGCCATTACTGG TGGTTGCTTGTATTTATATTATGTATACAAAACACAAACGGGTTGGTCGG TCCAAGCTATTGCTTTTAGTACAAACATCTATGCAGATAATGTATAtgtt aaaatgtaaaaatacagTTTCATCCAAGATGTCTCTCCTGTTTAATTTCA TCTTGTTTCATTCAGTCGCTTGTGACTTTACTTGGGTTAATTAAtatatc aattttgaaaaaatagaggCTTAAACGTAAAATTAATGTCAACACTCATT TGTCCCAGTACTTCTCTATTTAAGGGGTTTTAAAAATGAGCATTTGCAGC TTTTCTTGGAATTGCCCCATTTTTATGTGAGATTGATTCATTagttttct tctgatttttgcaTAAAAATAAAGGGCGATGTTTTcaaaaagtgactgaa aatttttttttgatcttAAAAATCTGTTTCTCTTTTTGGGTAAATTCCCT TCATcagttttagggaaaatgagcatttctctcGATTGACTTGGTACGTT TTCTGATGTTTTGCAAACTGATTTTAAATGGTATGGAATCTGAGagagtc cgattttcgaaaattttttttggcaaatttgggccaaaaggTGCCTAAGA ATGAGGTTTTCTGAACTTGTGTGAAATTCCTTTTCAAGTTAGTGTTTTAT TATatagactctggataaacatcgaatgaaacggtggagaacGATTGTGT TTCAGAATATAATCGGTGTATTGTCCGcgaaggacaactgtcatggcggc tcgaagtactctgattttgaaaaatgactaattactgtttttgcatcttt ctcgcattttaaaacgtcataacgacgtataattagtaattaactagatg ATGTGTTTGACTCTCGGAGGAGAACTAAAAGCCTCATTTGGGAATTAGgc aagtgtattttgatgagaaatgcaattaaaatgctatgaAGAATCATGTT AATAGTGGAAGgaggtgaacaataatgtcattgctgcggacaaggcttgt acatgagaaattggcaaaaatcagcgaGTTGTTTTTCCTGTGTTTATTAT AAAATAATTCCTTGGTAGTACTTCAGGTGTACNtagtcattttttctttt gatcatgaaagtatagtccttgaagagtcagaaaacgtgtgtggcgttat ttggatcaggctc Run BLAST on NCBI protein sequence of TCONS_00048594-protein >TCONS_00048594-protein ID=TCONS_00048594-protein|Name=TCONS_00048594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MSSESELVDMAKLAEQAERYDDMVQFMTQLTEKNQILTDEQRNLLSVAFK NVVGARRSAWRIISSMEQRCIEKGEGNQAELAKKYREEIEKELEARCQEV LKLIDDSLLKTVDQGERPDEAKVFYLKMKGDYYRYLVEVKDTSNPERAKL AEQSKEAYGNATEAAEGLTNTHPIKLGLALNYSVFHYEIMNDGTKACELA KKAFDDAIAELDSLKEDSYKDSTLIMQLLRDNLTLWTSENNKDDDQDES Run BLAST on NCBI transcript from alignment at scaffold_144:60411..65255+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048594 ID=TCONS_00048594|Name=TCONS_00048594|organism=Clytia hemisphaerica|type=transcript|length=4845bp|location=Sequence derived from alignment at scaffold_144:60411..65255+ (Clytia hemisphaerica) TGaaattcgattagttcgatggtTCGACTGACATCGTCTGGCTGGGtaga
atttttttagaatttatttctCCGAGAGGACAAAAATCAAAAGTCCAAAT
CTCATCTGGATGGATTCTTTCAAACCGAAATATTACTGATCAAAAAATGA
AACAGCCCAATGTAAATATCATTCTTGTTGGTGAAATTTAAGTATCTAGA
ATATACTTACAATAAAGGGGAGAATATCATACTTGACTTGACCTGCCatc
ttgcttcacttttttggatACTTTGTTGTTTAAGCCCTGGGAAATAGTAT
CTCGATAGTGAAAGTATGTAAACCCGTGGCAACTTTTTAAATACAAGGGG
CagggttttttcaaaaaaaaactaccCGGATGAAAGCTCTGCTTCTGATT
GGTTAAAGCTAACATcatactttcgatttcaaattcACGAAGTATACACC
AAGCTCAGATCGCAAACTATAATAGCTGTTCCCAATATCATCATTAATAA
ATCGCATCTGAGTATGATTGACGATAAGAAAGCAGCGTAGTTGTTGAAGA
AGGAGGACTTGAATCAGCGTTCAAGGCAAGGTCTGACAGCGAGTTCATAT
TCTATCTTGAAGTTTATCTTTGTTAGAGGTTGTTATACCGTTAAATTTGT
GTTGAACCATGTCTTCAGAAAGTGAATTAGTTGATATGGCCAAATTGGCT
GAACAAGCCGAAAGGTATGATGATATGGTGCAATTTATGACCCAACTTAC
AGAGAAGAACCAAATTCTCACTGATGAACAGAGAAATTTACTCTCTGTCG
CATTTAAAAATGTTGTTGGAGCTAGACGATCAGCATGGAGAATCATCAGC
AGCATGGAGCAACGATGCATAGAAAAAGGGGAAGGAAATCAAGCCGAATT
AGCAAAAAAATACAGGGAAGAAATTGAGAAAGAATTAGAGGTAAAATCTC
AATACTAACCTATTTCAGATTTATTATCCCTTTTTTTCACTTGTCCTTGT
TACTGTCAACTTTAAGATTTATTGAGCCTTACAACAAGAAAGACCAACAC
TTCTATTGTTTTGTTTCAGAGAAAGATTTCTTGACATGTTCTAGTTCTGT
ATTTTTCTTGATATACAAAAAGCTATTGTGGATTGACATGACTGTATAAT
TTTCTCCTCGATTTCAATGGAAACCAAATAGGTTATATTAATCATTTTTG
TCTGTAGCAGGACTGACTGGGCTGGAGGCCTTGTTAGCAATAACAGTTAT
GAACCCAACTGATGTCTTGTGGTGCTCCAGTCTAGCTAGAAATATACTTT
AATGgagaattaattatttttctaacATTGAATTAAAGAAAGTAAATGTA
ACTGAATTATCATCTTGTTTTAGTAAGGGGTCACTCGCATATCGATTTTT
CCTGTAACTAACATCATTGTGACGCAAGGGGGTGGGGGGTCAGAGCCtat
gacgctaagaaatttcaacAGAATATCGATTTTCAAACCTGTAACATTTT
GTATTCCATCCTTCGCTACACCTGCCATCTTAATTCAAACGCATAAAATA
TAACAGATGATATCCAATACCCTTCCGTTACGTTTGTAGGAATATGTTAT
TATCGATCCCTAATCATAAAAACAGATACCGCAATAAGAAATAGATGGGC
CGTATTTTGATATACAAGGGATATACAAGGACCGCGCTGACAAAACAACG
AGCCGTTTGTCTGGGGACAAACAATTGTGAAAATCATAAGTCAAAACCAC
TTGTTTTAAAACCGTGCGAAACGAAGCACAAAAATCAATGTGGCTGGAAT
ATCAATATCTGTaatagagaagaaaaattactttcatcgatttttggtaT
ATTTATGTAAATGACGCTAAGaaaggggggtgggggggggttcTTCAGAT
AGCATCACAATGACGTTAGTTGCAGGAAAAATCGATATGCGAGTGACCCC
TAAGAGACTCGTTTATGCTGTTATAAAACTATGTTTCAGCAATTTTGGTT
AAAAGTTCTTTATAGAAAATAATGTTTACAAAAACTATAGGAAATAGGGT
TTCAGAAGTGAATTGTTGAAATAAGGCCTCCAAAAATATAGAACAAAGTT
TTGATTTCCCCTTAGAtggtttaaagaaaaatgtccataaatattgaaaa
aaatattaacagtaatgcggcaatcacaaatatcttcattttgtgtctaa
aaagtgagttggtCGGTCAGTCTTTCGGGTTCTCTTAcctccatcatcca
tttttggagtgaaTTCTTGAAGAAAGCTGCTAGCCAGCAGCCAAAATAAT
GTCATGGGTGGTTTCAATATATGACCTTTGAGCGCTGTGATCTCcaacag
tgctgcaaataacagCTGGTGAcgggtaattaccggtcattttTAAGCTA
ATATGTGTGTTTTTTTCCTGTGAAATTTTGATGGTTTCATTATTAGTGCT
TTCTGATCGAGTAATCACCAGCCAACTTTAAATTCCTTATTCGCATCACT
ACTACaacccaaaatggcgcatgaAATTTTTGGACGAAAGAAatgtcatt
gacagaaaaagtctgACAACTTTACCAACTCAAcgactcaattttcgaga
gttgGCCAGGCGATGCAAAACAAAGCTATATTTGTGATTGACGCCTAATA
AAAacttatgaatttttttaaataagatccTGTCGTTTCATGATAATGAT
GATGTAACAAGAATATTGTTTGCTTTAAATTAAAGAAATGACTTAAAAGA
TTCTCTTACTTTTCTCTTTCAGGCTCGTTGTCAAGAGGTCTTGAAACTTA
TCGATGATTCATTATTGAAAACTGTCGACCAAGGAGAACGCCCAGATGAA
GCTAAAGTATTCTACCTTAAAATGAAAGGAGATTATTACAGATACTTGGT
CGAAGTAAAAGACACATCAAACCCAGAACGTGCGAAACTCGCAGAGCAAT
CAAAAGAAGCATACGGCAATGCCACAGAGGCTGCAGAGGGTCTTACAAAC
ACTCATCCAATCAAATTGGGATTGGCATTAAATTATTCTGTATTCCATTA
CGAGATTATGAATGACGGTACCAAAGCCTGTGAATTGGCAAAGAAAGCAT
TTGATGATGCTATTGCTGAATTAGATAGCTTGAAGGAAGATTCTTACAAG
GATAGTACCTTAATTATGCAGCTACTTAGAGACAATTTGACCTTGTGGAC
ATCAGAGAATAACAAAGATGATGATCAAGACGAGTCGTGAGTCCGCCTTC
ATTTACATGTCTGACTATAAACACCAACAATCACCCAGAAGCTCATTCAA
CTTTTgatgatattttacaaacacaCCACACCACATCAATTATAATGTGG
CTAAGACTTTTGAACTTGTAATTTATCATTTTGCAATGATATCTTCGATC
AACTCCATGAAGGATTTACGCTGTTTTCTGATTATGATAGAAtgcaatca
aattttgttatatGTATAATTTTGTGCTTTTAGTAGTTTTTATGTGCATC
TTTTCACATTGTGCTCAAAAGCACAACTTTTCTCTGTCCCTGGCTGTCCC
TagctttttctaaaattaatccAATAATAGATGTTGTCTGGAATCTAATG
ACATTATTAGTTTTGTAATTTATTGTTTGATAAATAAGTATACTGAaatt
tagtgaatttttaaGTCCCAAGCCATTACTGGTGGTTGCTTGTATTTATA
TTATGTATACAAAACACAAACGGGTTGGTCGGTCCAAGCTATTGCTTTTA
GTACAAACATCTATGCAGATAATGTATAtgttaaaatgtaaaaatacagT
TTCATCCAAGATGTCTCTCCTGTTTAATTTCATCTTGTTTCATTCAGTCG
CTTGTGACTTTACTTGGGTTAATTAAtatatcaattttgaaaaaatagag
gCTTAAACGTAAAATTAATGTCAACACTCATTTGTCCCAGTACTTCTCTA
TTTAAGGGGTTTTAAAAATGAGCATTTGCAGCTTTTCTTGGAATTGCCCC
ATTTTTATGTGAGATTGATTCATTagttttcttctgatttttgcaTAAAA
ATAAAGGGCGATGTTTTcaaaaagtgactgaaaatttttttttgatcttA
AAAATCTGTTTCTCTTTTTGGGTAAATTCCCTTCATcagttttagggaaa
atgagcatttctctcGATTGACTTGGTACGTTTTCTGATGTTTTGCAAAC
TGATTTTAAATGGTATGGAATCTGAGagagtccgattttcgaaaattttt
tttggcaaatttgggccaaaaggTGCCTAAGAATGAGGTTTTCTGAACTT
GTGTGAAATTCCTTTTCAAGTTAGTGTTTTATTATatagactctggataa
acatcgaatgaaacggtggagaacGATTGTGTTTCAGAATATAATCGGTG
TATTGTCCGcgaaggacaactgtcatggcggctcgaagtactctgatttt
gaaaaatgactaattactgtttttgcatctttctcgcattttaaaacgtc
ataacgacgtataattagtaattaactagatgATGTGTTTGACTCTCGGA
GGAGAACTAAAAGCCTCATTTGGGAATTAGgcaagtgtattttgatgaga
aatgcaattaaaatgctatgaAGAATCATGTTAATAGTGGAAGgaggtga
acaataatgtcattgctgcggacaaggcttgtacatgagaaattggcaaa
aatcagcgaGTTGTTTTTCCTGTGTTTATTATAAAATAATTCCTTGGTAG
TACTTCAGGTGTACNtagtcattttttcttttgatcatgaaagtatagtc
cttgaagagtcagaaaacgtgtgtggcgttatttggatcaggctc Coding sequence (CDS) from alignment at scaffold_144:60411..65255+ >TCONS_00048594 ID=TCONS_00048594|Name=TCONS_00048594|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_144:60411..65255+ (Clytia hemisphaerica) ATGTCTTCAGAAAGTGAATTAGTTGATATGGCCAAATTGGCTGAACAAGC CGAAAGGTATGATGATATGGTGCAATTTATGACCCAACTTACAGAGAAGA ACCAAATTCTCACTGATGAACAGAGAAATTTACTCTCTGTCGCATTTAAA AATGTTGTTGGAGCTAGACGATCAGCATGGAGAATCATCAGCAGCATGGA GCAACGATGCATAGAAAAAGGGGAAGGAAATCAAGCCGAATTAGCAAAAA AATACAGGGAAGAAATTGAGAAAGAATTAGAGGCTCGTTGTCAAGAGGTC TTGAAACTTATCGATGATTCATTATTGAAAACTGTCGACCAAGGAGAACG CCCAGATGAAGCTAAAGTATTCTACCTTAAAATGAAAGGAGATTATTACA GATACTTGGTCGAAGTAAAAGACACATCAAACCCAGAACGTGCGAAACTC GCAGAGCAATCAAAAGAAGCATACGGCAATGCCACAGAGGCTGCAGAGGG TCTTACAAACACTCATCCAATCAAATTGGGATTGGCATTAAATTATTCTG TATTCCATTACGAGATTATGAATGACGGTACCAAAGCCTGTGAATTGGCA AAGAAAGCATTTGATGATGCTATTGCTGAATTAGATAGCTTGAAGGAAGA TTCTTACAAGGATAGTACCTTAATTATGCAGCTACTTAGAGACAATTTGA CCTTGTGGACATCAGAGAATAACAAAGATGATGATCAAGACGAGTCGTGA ATGTCTTCAGAAAGTGAATTAGTTGATATGGCCAAATTGGCTGAACAAGC CGAAAGGTATGATGATATGGTGCAATTTATGACCCAACTTACAGAGAAGA ACCAAATTCTCACTGATGAACAGAGAAATTTACTCTCTGTCGCATTTAAA AATGTTGTTGGAGCTAGACGATCAGCATGGAGAATCATCAGCAGCATGGA GCAACGATGCATAGAAAAAGGGGAAGGAAATCAAGCCGAATTAGCAAAAA AATACAGGGAAGAAATTGAGAAAGAATTAGAGGCTCGTTGTCAAGAGGTC TTGAAACTTATCGATGATTCATTATTGAAAACTGTCGACCAAGGAGAACG CCCAGATGAAGCTAAAGTATTCTACCTTAAAATGAAAGGAGATTATTACA GATACTTGGTCGAAGTAAAAGACACATCAAACCCAGAACGTGCGAAACTC GCAGAGCAATCAAAAGAAGCATACGGCAATGCCACAGAGGCTGCAGAGGG TCTTACAAACACTCATCCAATCAAATTGGGATTGGCATTAAATTATTCTG TATTCCATTACGAGATTATGAATGACGGTACCAAAGCCTGTGAATTGGCA AAGAAAGCATTTGATGATGCTATTGCTGAATTAGATAGCTTGAAGGAAGA TTCTTACAAGGATAGTACCTTAATTATGCAGCTACTTAGAGACAATTTGA CCTTGTGGACATCAGAGAATAACAAAGATGATGATCAAGACGAGTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00048594-exon-scaffold_144-1491911889:60411..61350 | TCONS_00048594-exon-scaffold_144-1491911889:60411..61350 | Clytia hemisphaerica | exon |
TCONS_00048594-exon-scaffold_144-1510915933:60411..61350 | TCONS_00048594-exon-scaffold_144-1510915933:60411..61350 | Clytia hemisphaerica | exon |
TCONS_00048594-exon-scaffold_144-1575043694:60411..61350 | TCONS_00048594-exon-scaffold_144-1575043694:60411..61350 | Clytia hemisphaerica | exon |
TCONS_00048594-exon-scaffold_144-1491911889:63183..65255 | TCONS_00048594-exon-scaffold_144-1491911889:63183..65255 | Clytia hemisphaerica | exon |
TCONS_00048594-exon-scaffold_144-1510915933:63183..65255 | TCONS_00048594-exon-scaffold_144-1510915933:63183..65255 | Clytia hemisphaerica | exon |
TCONS_00048594-exon-scaffold_144-1575043694:63183..65255 | TCONS_00048594-exon-scaffold_144-1575043694:63183..65255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_144 | supercontig | scaffold_144:60411..65255 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0019904 | protein domain specific binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0019904 |
protein domain specific binding |
Blast
BLAST of TCONS_00048594 vs. Swiss-Prot (Human)
Match: 1433G (14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1 SV=2) HSP 1 Score: 291.967 bits (746), Expect = 1.457e-90 Identity = 150/245 (61.22%), Postives = 185/245 (75.51%), Query Frame = 2
Query: 659 MSSESELVDMAKLAEQAERYDDMVQFMTQLTEKNQILTDEQRNLLSVAFKNVVGARRSAWRIISSMEQRCIEKGEGNQAELAKKYREEIEKELEARCQEVLKLIDDSLLKTVDQGERPDEAKVFYLKMKGDYYRYLVEVKDTSNPERAKLAEQSKEAYGNATEAA-EGLTNTHPIKLGLALNYSVFHYEIMNDGTKACELAKKAFDDAIAELDSLKEDSYKDSTLIMQLLRDNLTLWTSENNKDD 1390
M +LV A+LAEQAERYDDM M +TE N+ L++E+RNLLSVA+KNVVGARRS+WR+ISS+EQ+ G + E+ + YRE+IEKELEA CQ+VL L+D+ L+K + + E+KVFYLKMKGDYYRYL EV + +RA + E S++AY A E + E + THPI+LGLALNYSVF+YEI N +AC LAK AFDDAIAELD+L EDSYKDSTLIMQLLRDNLTLWTS+ DD
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQY--ESKVFYLKMKGDYYRYLAEV--ATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDD 241
The following BLAST results are available for this feature:
|