TCONS_00048578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048578
Unique NameTCONS_00048578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048578 ID=TCONS_00048578|Name=TCONS_00048578|organism=Clytia hemisphaerica|type=transcript|length=491bp
ATAAAATCCAAAATAACTGTTAGTTTTCTCTAAAACTTTGTACAAATGCT
CTTATATACAATATAATCAAATGCTGAAAATTTTAGACCTAAGGctttac
aaaaactgaaaatattgatatttcgGTGAACGCGTAAAATGACAGAAAAT
GGtataaaattgtaataaatcTACTATCAGTTTCATGACATGAAATTCTT
CTTATGAGTCTATTTCAAGGGTTCAAAATCATGAAACTAGACATTCTAAG
tatatttaatgatgtcttGCTAGGAATTGGCCAGTTAATAtgtccatttt
caaattttaaacatgtacgGCAATAACGTGAGCTATGCTACATCCATTCA
GGGTGTCATGCGGTAACTTGAAAATCAGAAATATCCATGAGATGAAATTG
GTCAAATGACCTTTCTGTTGTAAACAAAGGCCATTGTATGTGATTTGAGC
AAGTAAATCAGTGATAAATCCAAGTGCTAGTCATTTATANN
Run BLAST on NCBI

transcript from alignment at scaffold_143:268866..269356

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048578 ID=TCONS_00048578|Name=TCONS_00048578|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at scaffold_143:268866..269356 (Clytia hemisphaerica)
NNTATAAATGACTAGCACTTGGATTTATCACTGATTTACTTGCTCAAATC
ACATACAATGGCCTTTGTTTACAACAGAAAGGTCATTTGACCAATTTCAT
CTCATGGATATTTCTGATTTTCAAGTTACCGCATGACACCCTGAATGGAT
GTAGCATAGCTCACGTTATTGCcgtacatgtttaaaatttgaaaatggac
aTATTAACTGGCCAATTCCTAGCaagacatcattaaatataCTTAGAATG
TCTAGTTTCATGATTTTGAACCCTTGAAATAGACTCATAAGAAGAATTTC
ATGTCATGAAACTGATAGTAgatttattacaattttataCCATTTTCTGT
CATTTTACGCGTTCACcgaaatatcaatattttcagtttttgtaaagCCT
TAGGTCTAAAATTTTCAGCATTTGATTATATTGTATATAAGAGCATTTGT
ACAAAGTTTTAGAGAAAACTAACAGTTATTTTGGATTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030889XLOC_030889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048578-exon-scaffold_143-1491911889:268866..269356TCONS_00048578-exon-scaffold_143-1491911889:268866..269356Clytia hemisphaericaexon
TCONS_00048578-exon-scaffold_143-1510915933:268866..269356TCONS_00048578-exon-scaffold_143-1510915933:268866..269356Clytia hemisphaericaexon
TCONS_00048578-exon-scaffold_143-1575043694:268866..269356TCONS_00048578-exon-scaffold_143-1575043694:268866..269356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:268866..269356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.343	17.0964	16.0365	23.1331	10.7503	5.82784	10.8951	7.97703	12.4863	8.89669	11.9333	7.09597	9.22902	5.68317	11.9102	15.7504	18.2041	20.6858	11.8775	16.6683	30.0291	30.2194	20.2026	21.6431	0	0.161818	17.352	12.1949	13.9108	16.9932
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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