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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048328 ID=TCONS_00048328|Name=TCONS_00048328|organism=Clytia hemisphaerica|type=transcript|length=670bp
TACCATGAGCTACGATTTTTTGCGTCATTGTGGAAACGCTTTAAAATACA
TCTATGGTCAAAGCCCTGAATACTGCCGACAATGGTGTAATGANACAGTA
TGTTTTTTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGG
CGACGAAGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTT
CAAATAAAAaaaatgggcCAATCGAGAGATGTACCATGAGCTACGATTTT
TTGCGTCATTGTGGAAACGCTTTAAAATACATCTATGGTCAAAGCCCTGA
ATACTGCCGACAATGGTGTAATGATAATAAGAAGTGCCATGTAGCACACT
GGCATCCACCTTATTCAATATGGGGCGATGAAGCTCGCTCGGTTTGTTTC
GTGTTTCCCCATGGGACTCAAAGTTGTGATTGGGGTGGTGCAGAACTGGG
AGATTACCATAAAGGAGCTCACATGGTTCGATGCATGTACCAAGAATAGC
TTACTAAGCTTTCTGACCAGTATTTTTTTAAGGCCTGTATATATGGGAAA
cgtgaaaaacgttttttctttatttttctatttttctagcTTTGTATGTA
TTTAACTATTTGGTATGCTTCGTAAGAATTTCAAATATACATTTACCATT
TAAAAATTGTTGATCAGCTA Run BLAST on NCBI transcript from alignment at scaffold_142:895005..895868+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048328 ID=TCONS_00048328|Name=TCONS_00048328|organism=Clytia hemisphaerica|type=transcript|length=864bp|location=Sequence derived from alignment at scaffold_142:895005..895868+ (Clytia hemisphaerica)
TACCATGAGCTACGATTTTTTGCGTCATTGTGGAAACGCTTTAAAATACA
TCTATGGTCAAAGCCCTGAATACTGCCGACAATGGTGTAATGANACAGTA
TGTTTTTTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGG
CGACGAAGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTT
CAAATAAAAGTAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaa
ttaccTTACAGTTATAGAAAATAAggaacatcataagaacatttttgtaa
CGTTTGTTTATAAAGTCTGTTCGCCACCAATCTTATTGGTAGaaaaagat
gtcacatgactttccgtggtaaagaatgaaaattgcattccttttttttt
cagaaaatgggcCAATCGAGAGATGTACCATGAGCTACGATTTTTTGCGT
CATTGTGGAAACGCTTTAAAATACATCTATGGTCAAAGCCCTGAATACTG
CCGACAATGGTGTAATGATAATAAGAAGTGCCATGTAGCACACTGGCATC
CACCTTATTCAATATGGGGCGATGAAGCTCGCTCGGTTTGTTTCGTGTTT
CCCCATGGGACTCAAAGTTGTGATTGGGGTGGTGCAGAACTGGGAGATTA
CCATAAAGGAGCTCACATGGTTCGATGCATGTACCAAGAATAGCTTACTA
AGCTTTCTGACCAGTATTTTTTTAAGGCCTGTATATATGGGAAAcgtgaa
aaacgttttttctttatttttctatttttctagcTTTGTATGTATTTAAC
TATTTGGTATGCTTCGTAAGAATTTCAAATATACATTTACCATTTAAAAA
TTGTTGATCAGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048328-exon-scaffold_142-1491911889:895005..895213 | TCONS_00048328-exon-scaffold_142-1491911889:895005..895213 | Clytia hemisphaerica | exon |
| TCONS_00048328-exon-scaffold_142-1510915933:895005..895213 | TCONS_00048328-exon-scaffold_142-1510915933:895005..895213 | Clytia hemisphaerica | exon |
| TCONS_00048328-exon-scaffold_142-1575043694:895005..895213 | TCONS_00048328-exon-scaffold_142-1575043694:895005..895213 | Clytia hemisphaerica | exon |
| TCONS_00048328-exon-scaffold_142-1491911889:895408..895868 | TCONS_00048328-exon-scaffold_142-1491911889:895408..895868 | Clytia hemisphaerica | exon |
| TCONS_00048328-exon-scaffold_142-1510915933:895408..895868 | TCONS_00048328-exon-scaffold_142-1510915933:895408..895868 | Clytia hemisphaerica | exon |
| TCONS_00048328-exon-scaffold_142-1575043694:895408..895868 | TCONS_00048328-exon-scaffold_142-1575043694:895408..895868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:895005..895868 + |
Blast
The following BLAST results are available for this feature:
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