|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048372 ID=TCONS_00048372|Name=TCONS_00048372|organism=Clytia hemisphaerica|type=transcript|length=2233bpRun BLAST on NCBI transcript from alignment at scaffold_142:455199..472255- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048372 ID=TCONS_00048372|Name=TCONS_00048372|organism=Clytia hemisphaerica|type=transcript|length=17057bp|location=Sequence derived from alignment at scaffold_142:455199..472255- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048372 vs. Swiss-Prot (Human)
Match: S28A3 (Solute carrier family 28 member 3 OS=Homo sapiens GN=SLC28A3 PE=1 SV=1) HSP 1 Score: 461.07 bits (1185), Expect = 2.603e-151 Identity = 263/529 (49.72%), Postives = 357/529 (67.49%), Query Frame = 1
Query: 367 DNTRNFIQKESQTVKXXXXXXXXXXXXXXXCFAVTLDAERAKDLIYVTVFG-FFCLFYWLIKKFFGRVIWKSCLKPIVAFFEAKRKIFTWILSLAFVGFLIFWLCWDTRK-DPGRLISLGGLLVYILIGFLFSKQRDRIRWRPVIWGFALQFIFGLLILRTDIGLNVFKWLGDRVTIFLGFSKAGIEFLF--RGLDQF-GLAILPIIVYFSAVTYVLYYLGWMQVFIKKVAWILQVTMGTSPAESVNAAGNIFIGQTEAPLLIRPFLEGMTASELHAVMTGGFATIAGSVLATYILFGVSASHLLSASVMSAPAALAMSKLMYPETEEPEFTEVDKIEIDGTEETNVFEALAVGASMSIGLVANIGVMIIAFLSVLALFDGLLGWFGGMVGLHELSFEFICSYVFMPFAFIMGVDYKDSFEVAKMLGIKTFLNEFIAYEKLGDIIKNRVLERGGLT--------MSIRSEVIATYALCGFANFGSMGVQIGGISSLAPSKRTVLSQVVLRALVAGTLACFMTACVAGIL 1914
D F +K T++ + I L Y++ A L+ RA L +TV FF ++ L+ K+ R+ L P + W++ + V +IFWL +DT K +L+S GGL++YI++ FLFSK R+ WRPV+WG LQF+ GLLILRTD G F WLG +V FL ++ AG F+F + D F +LPI+V+FS V +LYYLG MQ I+KV WI+ VT G+SP ESV A+GNIF+GQTE+PLL+RP+L +T SELHA+MT GF+TIAGSVL YI FGV +SHLL+ASVMSAPA+LA +KL +PETE+P+ T + ++++ + N+ EA GAS SI LVANI V +IAFL++L+ + L WFG M +LSFE ICSY+FMPF+F+MGV+++DSF VA+++G KTF NEF+AYE L I R + GG +SIRSE+IATYALCGFAN GS+G+ IGG++S+APS++ ++ +RAL+AGT+ACFMTAC+AGIL
Sbjct: 88 DTVCGFCRKHKTTLRHIIWGILLAGYLVMVISACVLNFHRALPLFVITVAAIFFVVWDHLMAKYEHRI--DEMLSPGRRLLNSHWFWLKWVIWSSLVLAVIFWLAFDTAKLGQQQLVSFGGLIMYIVLLFLFSKYPTRVYWRPVLWGIGLQFLLGLLILRTDPGFIAFDWLGRQVQTFLEYTDAGASFVFGEKYKDHFFAFKVLPIVVFFSTVMSMLYYLGLMQWIIRKVGWIMLVTTGSSPIESVVASGNIFVGQTESPLLVRPYLPYITKSELHAIMTAGFSTIAGSVLGAYISFGVPSSHLLTASVMSAPASLAAAKLFWPETEKPKITLKNAMKMESGDSGNLLEAATQGASSSISLVANIAVNLIAFLALLSFMNSALSWFGNMFDYPQLSFELICSYIFMPFSFMMGVEWQDSFMVARLIGYKTFFNEFVAYEHLSKWIHLR--KEGGPKFVNGVQQYISIRSEIIATYALCGFANIGSLGIVIGGLTSMAPSRKRDIASGAVRALIAGTVACFMTACIAGIL 612 The following BLAST results are available for this feature:
BLAST of TCONS_00048372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.