TCONS_00048000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048000
Unique NameTCONS_00048000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048000 ID=TCONS_00048000|Name=TCONS_00048000|organism=Clytia hemisphaerica|type=transcript|length=481bp
AAAAGTTTTGCACTGAAGATAGTGATATCTCTACTTTGACCATGCAGGAa
ttgatattttacagaccgaaAAGTTTGCGGAAAGCGGAACTTCGCGTCAA
CAAAAATGATGATGTTGAAGAAACCGCAGAAATCTTACCTGATGGCGCAG
CCGCCGACAATATAGATCAAGCGGACGGCATGAAACCCACGAAAAAGGAA
GACATAGGTGGTGAAGACGAAGACATGATGGCTCCACAAGTCATGTTAGA
TGAAAACGGTGATGTTGTCATCAATGAAACCAGTTTGACTATCCGTAAGG
CAGTGGATGACAGCGAACTTAAAAAAAGTGCTGTCTTGTACGAAGATTCC
ATGTCTACCAACACTCACAGACGTCGTGTGTCAAGGGTCAAACGCTGGCG
TATGGATGGTAAGGGTCTGTTTAGACTTTGTTGTTTTCAATGATatacac
acccccttctcatcacagacccactgggaac
Run BLAST on NCBI

transcript from alignment at scaffold_14:454260..463275+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048000 ID=TCONS_00048000|Name=TCONS_00048000|organism=Clytia hemisphaerica|type=transcript|length=9016bp|location=Sequence derived from alignment at scaffold_14:454260..463275+ (Clytia hemisphaerica)
AAAAGTTTTGCACTGAAGATAGTGATATCTCTACTTTGACCATGCAGGAa
ttgatattttacagaccgaaAAGGCATACATACTAGCGCCTGAAGATCAT
CTTTTTATTACGTGTTCTGGACATGTCTCTTGTAGCCTATATGAACATGT
CTAAAAATTTTGCATTGAAGATAGAGAGATATCTCTTCTTTGACCATGTA
GGAattgatattttacagaccgaaaaaaacaaagaaaatccaTGGGGGTC
AATGAAATTGTGTGAAAAATCCAGGGAGGTTCCAGGTTTTTCGGCAAAAA
TCTAAGGTGATAGCTCAAAAAATCATGTCAGGGCATgaatattttggcaa
aaatccaGGGGGGGGTCTGGCCTtctaaaaatgacctccttaaCAGGGGG
TAAATTTTTTATTCTGGAATTGCCCAATTAAATTATGAGGTGAacagaac
attggaaggagcaggAATTCGAACTGCGAATCCTGGTTTGTTATGCTGAC
GCCTTTAACCACTTAACCATCGTTCCTTAAAAAAGTTCGGGTCACCAGTT
CGAGTAATACTGAGGTtgagcataccaggataatcacgacgacagacgat
tggttgaaactcactaacctgttaaattttcgttcgtggTCGTGATTTTA
CCAATTTACTTAACTTCACTAACCTGTTACCGTCGGTTTGTATAAGTTTC
CTATTTCCGCgctaagattcttgtcacttttccggaatctttccgctatt
tttcccgggTTAACTGGCATGAAATTAGAAAGGGTTTGTTTTTTAAagta
cggaaaatcttgtgctTTCTCATACAAAACTGCCTAACTATACGAAGCTT
TTTTTTCAACTACCCGAtgtcctggtctttttccgctagaaaagtggcaa
aggaatcttagtgcggaaacgGGAAACTTTTACCAAACGACGGTCTAGAG
TATAGTGAGAAGTTGTTtaatgattttattattttctattttctgtttTA
GTTTGCGGAAAGCGGAACTTCGCGTCAACAAGTATGTGTGCTTTCTTTCT
TACTActttcgggtacctaatagccggggggcgctaattaatttttcgaa
cattttccacccaggaattttgagattttttccaacccccccccctgctt
attccaaaccctcGGCTATTAGATAACCGAGAGTAAGCACCAAGTATAAT
GTTTGGTCAAgacatcttttttttaaatggtcttttttagaaataaatca
TAACCTTCTTATGCTCCTTAACCCCCTTAGATATTTTAACGGGACAAATT
GCTGCcatagaaaaaagggaaaatgatTCTGAAGTTGCTGAAAATCCAGT
AGATTCATGGTTAAAAAAGATCactataaaatattgaattcatgatattc
atgatgtaatcttttatacgggagcacacaaaataatccggaactagtgg
caaaatttgccactagtcttttgttattttgccactagttccgggttatc
tcgggtgcttccgtataaaagattacgtcatgaatatcatgaataaaggt
TCGACTGACTGAGACATTACCTCatactttgatattttgaatgaattatg
tattcaatttttcgtgacttttttacatgaacaAGTGTATTTTGAACAAC
CGGCAAGTTAGAGgaggtaaaagtgctgattttacAGTCGTCCTGAATCA
GTCAGGGTtgaaaacacacatacataaactcgcttatGACTTTTCATTAT
CATCTATTCTTGAAGAGACTATAACTCTGCCGATATGTAATAGactttat
cggagtttttgatttttctaaaaaagcgatacatagtgggattgtttcga
gtgtattacaatagacttccctcgaggaattcctaagagatttctactgt
aatacactcgaaacaatcccacaatacatcgcttttttagatAAATCAAA
AACTTCGATATGTAATTCCCTCCATCTCTCTCCATCCATAGAAATGATGA
TGTTGAAGAAACCGCAGAAATCTTACCTGATGGCGCAGCCGCCGACAATA
TAGATCAAGCGGACGGCATGAAACCCACGAAAAAGGAAGACATAGGTAAA
GGTGTTCTGTCCACTGAACTTTAAATACACCCTGGAGGTGGTTTTCTCAA
TCCTGGCAAATCAAAATCCTTGATGGGAAGGGAGTTATTAAACTGGtatc
ttaaagggacataacagtacttgcgaaatttgtaaacaaactgtatgcag
cggatacaaaatcaaaacaaatgtcacatgtcaaaataaaaaaaaaacga
tatcGCAGTTGGGAAAGCAATCACCcggcaagcgagaggtcgtgggttca
cttcccactcgattcgttacctttgagaaaactgggaagtacattagtgc
aggatccgttgattcaaaataaaaaatcaaaccaaatatggctaactttg
attgttcaattgttttacaagtttgtttttgacacgtgattttaattgtt
ctctttaatgacacgtggtttcgtgcaatatttacattttactactttaa
tggtgctaaggaaactaatttttgcggagCTTATTTTCGCGGCGCAAGGG
CACTAAATTGGCGCATTctgcggaactaattttcgcagtagGAGGTTTGa
tttttcacagaaaagtgctaccaagtggtatttcgggtcccatatcttcc
gaatgACTTTTCCGTCTTGCTGAaaatttgacaaccttcttCAGTGTTCG
AAGTTTTTCTGTTTCAGCAAGGtactagtctacacaatagacagctccag
gcttttaggccttactcttggtctataggcactgctataggcggccacta
gtagcccccaccgggaattgcttattattAGGTTTAAATAtatagacaac
tttcacaaaagatgtttatcaatagagattttaaataaaagaatgtttaa
aacacagctgattggcttaggtttcgaaactctctattgtttcattaaaa
cctcagtgcgcatgcgatttatctgtagaatttcaatattcaaaacaaga
gcagtgctcatagcccgaagagtaggagttttacgctcgaaacgaaggaa
gatatgacgtagcctagcgaggtacaaaAAGAGGATTTTCCGTCtccaaa
ttgaacaaaaattcgGTAAAACATGAAGAATCTGGCCAGATTTGTTGTTC
AAAGTCCATTTCCGTCTGTGATGAAAACTTTGCTTTGACCGCTGCTTCTT
TAACTAAGGAAGGTTGagctaccactggtgtaaaaatgaacgttctATAT
AGCAtagatagaaaaaaagctcaatttttccAATCGTAAATTTGACCGTT
accagggtgtctacgggaccttgaaaaccttgaaaactttgaaagtgAAT
GTAATGGGAAAGaattccttgaaaaccttgaaaatgcatGATTGTGACTG
TATAGTTGTCTCGTTTTGGCTTGGGTCCTCACTAAAGTTTCGTTCTATGC
TAAACTCTAAAAactttcttgctcgcttcgctcgcaaacCAAATACTGGT
AGTAACATTTCTTGCATTATGTCAACAACTCATATCCTACTAGTTAAGTC
GATTTGAGTtctgaaaaaccttgaaaatacccaataaatggtccaaaaaa
ccttgaaaaaacacTTTGCCGAGctcaattttgccaaaaaagccTTGATA
ACCTTGAAAATAGCGACAGAATTCTGTAGACACCCTGgttaaaaatcgcg
aatttttcaaccaaaattaCATTCAAataatatagcgcttttgattctgt
ttgattctctaaaacaagcagcaaaaaaaattccacaaTTCTATTCGATT
AGGGGTAGGGGGTAGagtaacttttttggggggtatcttcagatcttctt
cgcctggtgttttttctgttccatataatgagagaagacatttaaaaaaa
attttttttaattttatgcatttttgacgaattccagcccaaaaaactgc
caggggggggggcttttttaccgaaaaattttttgatgtttattcttcat
atctcttccaaaacttgctcaaattcaagatgtagtgtttttttatgaaa
atttaacctattgtgaggcattctgattggccgaacccccctgggggtac
tgattcgcactacaggcaaaaattggaaaaaatgaaattttctggccttt
tcaggcctgtaaatatgtcaaaactattgcaaatcttatctttttcactt
gctgtactaataaaatccctgctaagagccatttttcaggcaaaaatcca
aatttggactgaaaaaatctctaaagtGACAATAGGCATGGGcctgaatt
ttcttgcagtgatagtattctggtaatactgcaggaaaatcaaagtcatc
tgggcttgggatttgggtatatccaccattttggaattgaaattcttgcT
ATAATGCaatatttttgcttgaaatgttgcaatttagccagttttagcac
agatttcaattccataatggcagatatacTCGAATCttaaacccaaatga
ttttgattttcctggagtatttccagaagactatcactgcgaAAAGaatt
taggttcatgtctattgccatttttaagatttttccagtcaaaaattgga
attttgattgaaatattgcattttatgaagaatttcaattccaaaatggt
ggatatacccaaatcccaagcccagatgactttgattttcctgcagtatt
accagaatactatcactgcaagaaaattcaggCCCATgcctattgtcatt
ttagagattttttcagtccaaatttggatttttgcctcaaaaatggctct
tagcagggattttatttccataataggggacatagacgcatcccagaccc
aaatgattttgatttccctagagtatctccagagtactatcactgcaaaa
aaaatttcaattagcatttaaactcaatttgtagaagcttgccttaaaaa
atgcttttttttgataagtatgatttttttttgctaaaaagcaattaaaa
gcaatttttgaagacgccattatgatttttgaaaaaagtgaaaatattga
aattcattttgtttaaagacttttttgaagacttccatctctgaataTTT
CAGATGTGTgaatcaattagtttaaagtttatgaacttacaaaattggcc
ttaaaaagcattttctaCCAAAGATTggcttaaaacagctcgttcagggc
tccaacgggcacaattttcaatccaatatgattattttgttgtttcttca
taaaatttagtacagcgagtgaaaaaaataagatttgcaatagttttgac
atatttacaggcctgaaaaggccacaaaatgccattttttccaatttttg
cctgtagtgcgaatcagtacccccaggggggttcggccaattttggactt
ctgaccttaaaaattgcgcagaatgcctcacaataggttaaattttcata
aaaaaacactacatcttgaatttgagcaagttttggaagagacatgaaga
ataaacctcaaaaaagctgatttttcggtaaaaaagcccccccgggcagt
tttttgggttggaattcgtcaaaaatgtgtttaaaattttttaaatgtgt
tctatcattatatggaacagaaaaaacacgaggcgaagaagatctgaaga
taccgaCTTTTACCCCCTACCCCTAATTCGATCTCAACTCTTTCCATTTT
TTTCTCATGGCTAGGTGGTGAAGACGAAGACATGATGGCTCCACAAGTCA
TGTTAGATGAAAACGGTGATGTTGTCATCAATGAAACCAGGTTTTTTCAA
TTACCTTCACTCTATTGAgctattccattttatatcaaCAATAGACAAAC
ATTCCATGAAGTAATTTGAGCAAAACTTCTGTGCGTCAATTTAACtgact
tttcatttttcaagggggtaaaaacgaatttatatgtttttttataagca
tacaaaatcCAAAAGCTGGCTCGGAAATGCTTTAGATCGAGagatttaca
aagctgaaaaatgctttgagggatgcttatatcaTAAGCAAcattttaga
gaaatttcgaaaatcctgCCAAAAACGAACAAATTCTGACAAATGAAGGC
TCAAAGTAATGTTTAGCATTTGCTTTAATTTTTCACATATATGAGcttag
atatgcttataagcgcaatgtttgtaaaaaaaacatgtacccaCGGTCAC
TTTAAggcatgaaaagaatttttccaagggttttttgaaaaattttccat
tttccagggcggaaaatggaaaatgttttttgacttgaaaaggctCTTcc
aaccccctgtatggaaatttaacgGAATGACCCATTCATACATACTAGCA
AGTTTATGCATCgaaggatatcgagggcgacggtaagtgaaatcgacgCA
AAACAAAAGTacatagttgatgtacggctctatatcgctcACCTAGACAG
GCGacagtattttggtgtttttacgcCGTCGGCAAGCAAATTGGATGGAT
ATTTTGGttacatgtcaactttgctttgaACCGTCTCTTTCGaattatct
cgaatacataaactcgctactacGCTGTTAAGGGCGTTTTAGACTAACCA
AGCTGATATAGCCACGGGATTTCGTAAAATTTAATCAGAACATTCGCCTT
ATTTGTTCATTTTGTGATGTAGGTGGGGGTGACCTTTTTCAGGTaggggt
tggaggggtgttgcCCACTATGAAGCCTTATTTGTTCATTTTGTGATGGT
TGTCTGTCCACTTTCAGGATTGGGATTTGTGTTTACTACAAttctctttc
atttttctaattttcatctTTCTGAAGAGTTGCAACAGAAAAATAGAGCG
TTTAAGTTTGAACGTGTATCAGTATTAACCATTCGGTtgaaagcccgaag
ggctaggaTAGAATCTTTAACcgttcccaggcaagaaaaaattaagcaac
ttatttcccatccaaaacgcgcctagaacgcgccgcaatcatgacaacgg
attgtatctagcggttcctttgtttttgaggactgtattttttgaaatct
agagattttactttcaatccggcgtttgtgtaaagaccacacgcgggcgt
tctggaagggaaaaaagtgttttcatttctGATCCAGGAATCTCGAgtat
agcccttcgggcttggaagtcaaggGTATTGACTGCTTTTTCTGTAAGTG
CTTCCTTGTTTGGagatgataaaaaaataatttgacggtattttggtgtt
tccGACCCCTGTACATCCGCACCGCGACGGAAGTCAGCCATTTGGAACAC
TGAACATTGAAAATTCCTTTAATACTTTTTGTGTTTCAGTTTGACTATCC
GTAAGGCAGTGGATGACAGCGAACTTAAAAAAAGGTAAggcctgaatttt
ttttttaaattgtgaatAGAACAAAGTGAAAAAACCTGATTTATCGAAAT
GTTTAGAGCTAGGTATCTGTAGTAATTGTTTAACTAACTCCGATGAGTTT
TAATTTATTTGCAAATTTGGACTGTTTGACCCTGGTCAGAATTTAAATCC
AATTTTGGATGGGTGAAGGGgggaatgaaaatttgaatagtaaagggggg
aggAAAGGGGAAGAGGGGGGaaacatcgatagttggcaaatttggcgggg
gaagtgtgaaatcacttcaacTTTATCTCAGCAACTGAAAAATTCAGTCT
GCTTTTCTAAGCAAGTTTGTCTACGttaaccaattttcgttctatttttt
ctagtattccttttgcagcaaaattttacgtttgtgtcaccaggttgaaa
tttgagaaattcagATGGGTATAaaggggaaacagatattttcagaattt
tctaggggaaagcaaaaaagaggggggaaactaaaaaactgaaaagtcat
agggggggaagaggggggagatttataaaaatcaagaatttggtggggga
aTAAACCCTGAAGGACACTAAGACATATCTCATAATATTTGCTCACACAG
CAGTCTTAAATACAAAAGGAGACACAGCTTTCTCCCCTCCCTCCCACACG
AacacaaacaaaacaaattcttttgtttaactGACCAAGCCAGCCAAGTC
ACTACTTAATTTTAACCAAATCCTCGCACTGGTCTTGTTTGCTTTGGCCG
AATTCAGATTCTGATCTGGTTCGGTGTGGCGGAACCAAAACTTTACAAAT
CATATCAAAGCTTCAAGGTTTATTATAGGTCCAGAAAATAAAACggaaaa
acctaaaatttcaTTAACTATAGTTGCTTATAATTCAAATGGCCCCTCGA
TAGAAATCCATATGTTATACTCCGGGATATACAGCTATCCATAGACCATT
GTTCGatcctacaatcatggtcaaaatatattgacattttagtgcatttt
aacgtttttcagactTTAAAGTTCTGGTTCGGGTGAGAATTGCTAATTTA
ATTTAGCACTtttactttctttcattgaatattttgattttagaggggtt
cggtggcttctaggctatattccaagccttactCGAGCAAATACTATGAg
tatgagcttttaaatcctgagatcctaaggttctAAGTTTTAAgtttcat
gttaaaactcagagttaaaactctactttccaactgtagtttaaggcgct
taaaaatcatttgtggtgtttaaaatttcgccgggaaatcccctttctct
caattttgtccatgattgtagttggTACAATTTTGATGCTGGTTATTTTA
ATTAGTTTGCTACTGCAATCCTGAGATTTTCAGATTTCATTTTTTACATT
CTAACATCTTCAGTGCTGTCTTGTACGAAGATTCCATGTCTACCAACACT
CACAGACGTCGTGTGTCAAGGGTCAAACGCTGGCGTATGGATGGTAAGGG
TCTGTTTAGACTTTGTTGTTTTCAATGATatacacacccccttctcatca
cagacccactgggaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030545XLOC_030545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048000-exon-scaffold_14-1491911889:454260..454332TCONS_00048000-exon-scaffold_14-1491911889:454260..454332Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1510915933:454260..454332TCONS_00048000-exon-scaffold_14-1510915933:454260..454332Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1575043694:454260..454332TCONS_00048000-exon-scaffold_14-1575043694:454260..454332Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1491911889:455261..455290TCONS_00048000-exon-scaffold_14-1491911889:455261..455290Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1510915933:455261..455290TCONS_00048000-exon-scaffold_14-1510915933:455261..455290Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1575043694:455261..455290TCONS_00048000-exon-scaffold_14-1575043694:455261..455290Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1491911889:456251..456354TCONS_00048000-exon-scaffold_14-1491911889:456251..456354Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1510915933:456251..456354TCONS_00048000-exon-scaffold_14-1510915933:456251..456354Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1575043694:456251..456354TCONS_00048000-exon-scaffold_14-1575043694:456251..456354Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1491911889:460024..460099TCONS_00048000-exon-scaffold_14-1491911889:460024..460099Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1510915933:460024..460099TCONS_00048000-exon-scaffold_14-1510915933:460024..460099Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1575043694:460024..460099TCONS_00048000-exon-scaffold_14-1575043694:460024..460099Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1491911889:461649..461693TCONS_00048000-exon-scaffold_14-1491911889:461649..461693Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1510915933:461649..461693TCONS_00048000-exon-scaffold_14-1510915933:461649..461693Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1575043694:461649..461693TCONS_00048000-exon-scaffold_14-1575043694:461649..461693Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1491911889:463123..463275TCONS_00048000-exon-scaffold_14-1491911889:463123..463275Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1510915933:463123..463275TCONS_00048000-exon-scaffold_14-1510915933:463123..463275Clytia hemisphaericaexon
TCONS_00048000-exon-scaffold_14-1575043694:463123..463275TCONS_00048000-exon-scaffold_14-1575043694:463123..463275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:454260..463275 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32091	0.931423	0.97198	0.762092	0	0	0	0	1.73518	1.13341	2.3044	0.493713	0.65094	1.01687	1.17176	2.5651	1.87144	2.23231	0	1.85472	2.08924	1.56051	4.07723	2.96377	0	0	1.49279	0.745511	2.39211	2.50079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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