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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047932 ID=TCONS_00047932|Name=TCONS_00047932|organism=Clytia hemisphaerica|type=transcript|length=1478bp
caacaacaggATCTTTTGACACGCTTGTTGCAAGAGCTTTTGCTGCAAGC
GAGGAGAATATCCCTATTGATCCAGAGCTAGAACATCAGGAGAGGGCAAA
TACTGaacaaaaaagttcaaaacGTTATCCCTTCAAGACCCACTCTCTAT
ACCACAGAAAGAATGCGCTGGTGAAAAAGATGGAATCCACAAATGGCCTA
AGACGTACTTCATGGACATTTCAAGACATTTTTCTCAAGTTCTTGGAAAT
GATAATTTATGGCAACGTCTAGAGTGCGAATATAAGGAAGGGAAAGCTTA
TCGATATTATAGTGATGGCTTTCTTGGAGAACTTCATATCAATTTCCCTG
AACAAAATCCTAATGTATGTATCAGGAAACCAAAGTGCCTTCTTTCCCAA
CGTGTATCCATGAAACAATACGATGTGTGGGTTATCATACAGCAAAAGGA
TACTGAGAGAGAAATGGATGGGCAAATCTTGAGAGGGTATTGCACCTGTA
CAGCAGGCCTTCTAGGGAGCTGTAATCATGTAGCTGGGTTGCTGTTTAGA
CTTGAAATTGCAAATCTCATGGGAGAAACAAGGAAAACGTGTACTTCGTC
ACGATGTAAATTTGTTGAACCCCCACcatcaaagaaaaaagtcatTAAAC
CAGGAAAGCTGTCTTCATTTGTATTCAAACAAGAAAAGTACAGTAGGCTG
GCCATTTCTAAGACAAAATCAGATTCAAAGCAAAGTTTAAAACGAAAACT
GGAATATATGCCAATGAGTAGCAGTGTTACTTGTAAAGAACTTGTttctg
aaccaaaaaaaatgagggatattttttacaaatctttcaaaaatgttatt
cCTGACAGTTGTTTCATTCAAATAATGGATGTTACTGAAGAAGTTACTGA
AGAATCGAAAATTCTTTCACTTAAGGAACatgcaaaagtttttaaagACA
AGAATTGTTATGATACTGAAACATATATCGAAGCTATTACACTATCAGAT
GATCAAATATCAAAAGTTTATGAAAAAACAGTTGCACAGAGTAATTCAGA
GTTTTGGGTTGAGCAAAGAAAAGGTCGTATAACAgcttcaaaatttaaga
aagtcTTTACAAGAatggaatctttaaaaaaatctgacCAAGAACCTATT
CCCCTTCTAAAAGAGATAATGGGAGAAGACAATAAAAAACCTACTTGGCA
AATGAAACATGGCATTTCGTCAGAACGACATGCCATTATGCGATTCAAGC
AAACTCATTCTCATTACAAACATTGAGAAACCTAAACAAACAATTGACTA
CTCTGAaattcatagtaacattgataTTGAGATGATTTTATTGCAGGATA
ATCTTGAAATCACCTTTGACGTATGACTATATTATACAATACTGATAACA
CACGAATATATTATGTAAAAAGTCTGAGTTTCATATTCACTAATTTTCTA
atatattacacgtttttttataaggaac Run BLAST on NCBI protein sequence of TCONS_00047932-protein >TCONS_00047932-protein ID=TCONS_00047932-protein|Name=TCONS_00047932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MDISRHFSQVLGNDNLWQRLECEYKEGKAYRYYSDGFLGELHINFPEQNP
NVCIRKPKCLLSQRVSMKQYDVWVIIQQKDTEREMDGQILRGYCTCTAGL
LGSCNHVAGLLFRLEIANLMGETRKTCTSSRCKFVEPPPSKKKVIKPGKL
SSFVFKQEKYSRLAISKTKSDSKQSLKRKLEYMPMSSSVTCKELVSEPKK
MRDIFYKSFKNVIPDSCFIQIMDVTEEVTEESKILSLKEHAKVFKDKNCY
DTETYIEAITLSDDQISKVYEKTVAQSNSEFWVEQRKGRITASKFKKVFT
RMESLKKSDQEPIPLLKEIMGEDNKKPTWQMKHGISSERHAIMRFKQTHS
HYKH Run BLAST on NCBI transcript from alignment at scaffold_139:729739..731648- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047932 ID=TCONS_00047932|Name=TCONS_00047932|organism=Clytia hemisphaerica|type=transcript|length=1910bp|location=Sequence derived from alignment at scaffold_139:729739..731648- (Clytia hemisphaerica)
CAACAACAGGATCTTTTGACACGCTTGTTGCAAGGTATGTTTATTTTTCT
CACACAAGATATTTTTGTAAATCACACACACTTTCGACATTTTATGAAAT
GCACACAGCTCATATTCGGCTATCTAAATTTAAGTTTTTCCTCTTTTCTA
CTTAGAGCTTTTGCTGCAAGCGAGGAGAATATCCCTATTGATCCAGAGCT
AGAACATCAGGAGAGGGCAAATACTGAACAAAAAAGTTCAAAACGTTATC
CCTTCAAGACCCACTCTCTATACCACAGAAAGAATGCGCTGGTGAAAAAG
ATGGAATCCACAAATGGCCTAAGACGTACTTCATGGACATTTCAAGACAT
TTTTCTCAAGTTCTTGGAAATGATAATTTATGGCAACGTCTAGAGTGCGA
ATATAAGGAAGGGAAAGCTTATCGATATTATAGTGATGGCTTTCTTGGAG
AACTTCATATCAATTTCCCTGAACAAAATCCTAATGTATGTATCAGGAAA
CCAAAGTGCCTTCTTTCCCAACGTGTATCCATGAAACAATACGATGTGTG
GGTTATCATACAGCAAAAGGATACTGAGAGAGAAATGGATGGGCAAATCT
TGAGAGGGTATTGCACCTGTACAGCAGGCCTTCTAGGTAAATTGCATTTT
TTTCTCAATAAAAATCATGTCTTTTATAAGAAAGATTTTTATAAGAATAT
TAGGAGCTAAAATTGGGTGAATTTTAAGAATTCAAAAATATTCCCAGGGT
GAGTTTGATAAGAATAACTAATTTTAGTAACCAAGAATAATTTTGATTAC
TTCGTAGTCCAAAATAATAAAAAAAATAAATGACAACCAAGCTTTTAAAG
CTTGGTTGTATTTATTTTCTTTATTATTATTTTATTATTTTATTAAAGCT
TAGTTGTTTTTTTCTTATTTGTTATTTTATTTAACTTTTTATTTCAGGGA
GCTGTAATCATGTAGCTGGGTTGCTGTTTAGACTTGAAATTGCAAATCTC
ATGGGAGAAACAAGGAAAACGTGTACTTCGTCACGATGTAAATTTGTTGA
ACCCCCACCATCAAAGAAAAAAGTCATTAAACCAGGAAAGCTGTCTTCAT
TTGTATTCAAACAAGAAAAGTACAGTAGGCTGGCCATTTCTAAGACAAAA
TCAGATTCAAAGCAAAGTTTAAAACGAAAACTGGAATATATGCCAATGAG
TAGCAGTGTTACTTGTAAAGAACTTGTTTCTGAACCAAAAAAAATGAGGG
ATATTTTTTACAAATCTTTCAAAAATGTTATTCCTGACAGTTGTTTCATT
CAAATAATGGATGTTACTGAAGAAGTTACTGAAGAATCGAAAATTCTTTC
ACTTAAGGAACATGCAAAAGTTTTTAAAGACAAGAATTGTTATGATACTG
AAACATATATCGAAGCTATTACACTATCAGATGATCAAATATCAAAAGTT
TATGAAAAAACAGTTGCACAGAGTAATTCAGAGTTTTGGGTTGAGCAAAG
AAAAGGTCGTATAACAGCTTCAAAATTTAAGAAAGTCTTTACAAGAATGG
AATCTTTAAAAAAATCTGACCAAGAACCTATTCCCCTTCTAAAAGAGATA
ATGGGAGAAGACAATAAAAAACCTACTTGGCAAATGAAACATGGCATTTC
GTCAGAACGACATGCCATTATGCGATTCAAGCAAACTCATTCTCATTACA
AACATTGAGAAACCTAAACAAACAATTGACTACTCTGAAATTCATAGTAA
CATTGATATTGAGATGATTTTATTGCAGGATAATCTTGAAATCACCTTTG
ACGTATGACTATATTATACAATACTGATAACACACGAATATATTATGTAA
AAAGTCTGAGTTTCATATTCACTAATTTTCTAATATATTACACGTTTTTT
TATAAGGAAC Coding sequence (CDS) from alignment at scaffold_139:729739..731648- >TCONS_00047932 ID=TCONS_00047932|Name=TCONS_00047932|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_139:729739..731648- (Clytia hemisphaerica)
GGAGCTGTAATCATGTAGCTGGGTTGCTGTTTAGACTTGAAATTGCAAAT
CTCATGGGAGAAACAAGGAAAACGTGTACTTCGTCACGATGTAAATTTGT
TGAACCCCCACCATCAAAGAAAAAAGTCATTAAACCAGGAAAGCTGTCTT
CATTTGTATTCAAACAAGAAAAGTACAGTAGGCTGGCCATTTCTAAGACA
AAATCAGATTCAAAGCAAAGTTTAAAACGAAAACTGGAATATATGCCAAT
GAGTAGCAGTGTTACTTGTAAAGAACTTGTTTCTGAACCAAAAAAAATGA
GGGATATTTTTTACAAATCTTTCAAAAATGTTATTCCTGACAGTTGTTTC
ATTCAAATAATGGATGTTACTGAAGAAGTTACTGAAGAATCGAAAATTCT
TTCACTTAAGGAACATGCAAAAGTTTTTAAAGACAAGAATTGTTATGATA
CTGAAACATATATCGAAGCTATTACACTATCAGATGATCAAATATCAAAA
GTTTATGAAAAAACAGTTGCACAGAGTAATTCAGAGTTTTGGGTTGAGCA
AAGAAAAGGTCGTATAACAGCTTCAAAATTTAAGAAAGTCTTTACAAGAA
TGGAATCTTTAAAAAAATCTGACCAAGAACCTATTCCCCTTCTAAAAGAG
ATAATGGGAGAAGACAATAAAAAACCTACTTGGCAAATGAAACATGGCAT
TTCGTCAGAACGACATGCCATTATGCGATTCAAGCAAACTCATTCTCATT
ACAAACATTGAATGGACATTTCAAGACATTTTTCTCAAGTTCTTGGAAAT
GATAATTTATGGCAACGTCTAGAGTGCGAATATAAGGAAGGGAAAGCTTA
TCGATATTATAGTGATGGCTTTCTTGGAGAACTTCATATCAATTTCCCTG
AACAAAATCCTAATGTATGTATCAGGAAACCAAAGTGCCTTCTTTCCCAA
CGTGTATCCATGAAACAATACGATGTGTGGGTTATCATACAGCAAAAGGA
TACTGAGAGAGAAATGGATGGGCAAATCTTGAGAGGGTATTGCACCTGTA
CAGCAGGCCTTCTAGGGAGCTGTAATCATGTAGCTGGGTTGCTGTTTAGA
CTTGAAATTGCAAATCTCATGGGAGAAACAAGGAAAACGTGTACTTCGTC
ACGATGTAAATTTGTTGAACCCCCACCATCAAAGAAAAAAGTCATTAAAC
CAGGAAAGCTGTCTTCATTTGTATTCAAACAAGAAAAGTACAGTAGGCTG
GCCATTTCTAAGACAAAATCAGATTCAAAGCAAAGTTTAAAACGAAAACT
GGAATATATGCCAATGAGTAGCAGTGTTACTTGTAAAGAACTTGTTTCTG
AACCAAAAAAAATGAGGGATATTTTTTACAAATCTTTCAAAAATGTTATT
CCTGACAGTTGTTTCATTCAAATAATGGATGTTACTGAAGAAGTTACTGA
AGAATCGAAAATTCTTTCACTTAAGGAACATGCAAAAGTTTTTAAAGACA
AGAATTGTTATGATACTGAAACATATATCGAAGCTATTACACTATCAGAT
GATCAAATATCAAAAGTTTATGAAAAAACAGTTGCACAGAGTAATTCAGA
GTTTTGGGTTGAGCAAAGAAAAGGTCGTATAACAGCTTCAAAATTTAAGA
AAGTCTTTACAAGAATGGAATCTTTAAAAAAATCTGACCAAGAACCTATT
CCCCTTCTAAAAGAGATAATGGGAGAAGACAATAAAAAACCTACTTGGCA
AATGAAACATGGCATTTCGTCAGAACGACATGCCATTATGCGATTCAAGC
AAACTCATTCTCATTACAAACATTGAATGGACATTTCAAGACATTTTTCT
CAAGTTCTTGGAAATGATAATTTATGGCAACGTCTAGAGTGCGAATATAA
GGAAGGGAAAGCTTATCGATATTATAGTGATGGCTTTCTTGGAGAACTTC
ATATCAATTTCCCTGAACAAAATCCTAATGTATGTATCAGGAAACCAAAG
TGCCTTCTTTCCCAACGTGTATCCATGAAACAATACGATGTGTGGGTTAT
CATACAGCAAAAGGATACTGAGAGAGAAATGGATGGGCAAATCTTGAGAG
GGTATTGCACCTGTACAGCAGGCCTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047932-exon-scaffold_139-1575043694:731615..731648 | TCONS_00047932-exon-scaffold_139-1575043694:731615..731648 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1575043694:731013..731493 | TCONS_00047932-exon-scaffold_139-1575043694:731013..731493 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1575043694:729739..730701 | TCONS_00047932-exon-scaffold_139-1575043694:729739..730701 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1510915933:731615..731648 | TCONS_00047932-exon-scaffold_139-1510915933:731615..731648 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1510915933:731013..731493 | TCONS_00047932-exon-scaffold_139-1510915933:731013..731493 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1510915933:729739..730701 | TCONS_00047932-exon-scaffold_139-1510915933:729739..730701 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1491911889:731615..731648 | TCONS_00047932-exon-scaffold_139-1491911889:731615..731648 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1491911889:731013..731493 | TCONS_00047932-exon-scaffold_139-1491911889:731013..731493 | Clytia hemisphaerica | exon |
| TCONS_00047932-exon-scaffold_139-1491911889:729739..730701 | TCONS_00047932-exon-scaffold_139-1491911889:729739..730701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:729739..731648 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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