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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050564 ID=TCONS_00050564|Name=TCONS_00050564|organism=Clytia hemisphaerica|type=transcript|length=1403bp
AGCTGATATGGAATATACTTTTTAGTACATTATATAATGATaaacagatt
ttttgatttgttttattagAAACCAGCAAGGTTATGATGAAGTGGATCAA
TTTCCTCACAGACGCCAACCTCCAAATAAAATCAATGATGTCATCAACAG
GTATGGACTTCCTACAGGTGATTTTGTGATGCAATATTCCAATCATGTCT
TACAGTACGATACTGcaagaaaaattccaaaatgggTCTTAGAGCATATG
TCAAAAGACGATTTGAAAGGCCACGCAGAACGAAGTCAGTGTAATTTCAA
GGTAGATCAAAGTGTACCGAAACAGTTTCGCTCACACAATGAAGATTACC
TTGGAAGTGGTTTTGCTCGTGGACACATGGTGCCAGCAAGCGACGTAAAG
AAATCACAAGAGAGTATGCAAGAGACATTTTACCTCACCAATATTCTACC
ACAAGATTTTGATAATAATGGAGGTTTTTGGTATCGTATGGAAAATTACT
GCCGTTCCTTAACCAACAGATTTACTGATGTTTACGTTATTTCGGGTCCA
CTGTTCCTTTCGCATTTtgttcaaaataagaaaatggtGACTTTTCAGGT
TATTGGTGATAACAACGTTGCAGTACCCAGCCACTTGTTCAAGATAATCC
TTGTGGAGAACCACGGACGACCCATCGCTGCAGGAGCTTTCGTTGTTCCA
AATGCACCGATTGCAGATGATAAAGTACTGACTGATTATCAAGTTTCGTT
ATCACAGATCGAAAATATGACTGGATTCATGTTTTTCCCTAAAATAGACA
TGAACAATTTACCAAATTTATGTTCGAGAGACAACTGTCAGTTGCTAACA
AAAAATACGGctgatttgaatattttgatgaaaaacttgAAACGTGTTCG
GAGTAAAGAGGAATTAGACAATCTGTGGAATCAAGTTCTTCAAAAGAACG
TACAGCTCGACCAAAAATTCATGCAAATGTACTGGGAGAAACGGAAGACA
TATGAAAAAGATAATTAAATTGACTTTGAGTGTGCATTGTTTACAAGAGA
AATTAGTATCAAGAAAACAAGATGTGTTTTCAGACTTGTTTTCGTTTAAT
CAGGTATGCAAGGTATGATAATGTTTTTAACTGTGAGCTTAGTGTCTGAT
TTCGAGTTACCCTTTTGAAAAGTCCTTGTCGACTTAATCACGAAAAATTG
ACCATTTTACACACACAGTGTAAATAATAGGTGGAAGGTGTTTTTTTAAA
GGTGTGTCTTTGGCTGTTCGACTTAGGTGATTGTGAATATTTTGTGAATT
cgcttaattttttttgagaattttctaaatttttattgGAGTATTTATAG
ATgttgtttataaaattttatactgagaaaataaaaaaattgaattaaaa
aat Run BLAST on NCBI transcript from alignment at scaffold_179:544947..548029- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050564 ID=TCONS_00050564|Name=TCONS_00050564|organism=Clytia hemisphaerica|type=transcript|length=3083bp|location=Sequence derived from alignment at scaffold_179:544947..548029- (Clytia hemisphaerica)
AGCTGATATGGAATATACTTTTTAGTACATTATATAATGATAAACAGATT
TTTTGATTTGTTTTATTAGAAACCAGCAAGGTTATGATGAAGTGGATCAA
TTTCCTCACAGACGCCAACCTCCAAATAAAATCAATGATGTCATCAACAG
GTATGGACTTCCTACAGGTGATTTTGTGATGCAATATTCCAATCATGTCT
TACAGTACGATACTGCAAGAAAAATTCCAAAATGGGTCTTAGAGCATATG
TCAAAAGACGATTTGAAAGGCCACGCAGAACGAAGTCAGTGTAATTTCAA
GGTAGATCAAAGTGTACCGAAACAGTTTCGCTCACACAATGAAGATTACC
TTGGAAGTGGTTTTGCTCGTGGACACATGGTGCCAGCAAGTAAGAAACGT
TTCACATTCTTTAACTATTTCACATACTCTGGGACAACACTCACAACATA
ACCTGGAATGATTTTATTTATGAATCTAAAAATTCACATCAAAAGAATTG
GTTGAATATACTGGATTGTTATGTAAACAAAATTACTATCATCTAAATCA
GAAATTGTTCTTTTAGGGTATAGCTAAAATTTATGAATTTACACATTGAA
CTATCCTTCTTCCACTTTATAGGCGACGTAAAGAAATCACAAGAGAGTAT
GCAAGAGACATTTTACCTCACCAATATTCTACCACAAGATTTTGATAATA
ATGGAGGTTTTTGGTATCGTATGGAAAATTACTGCCGTTCCTTAACCAAC
AGATTTACTGATGTTTACGTTATTTCGGGTCCACTGTTCCTTTCGCATTT
TGTTCAAAATAAGAAAATGGTGACTTTTCAGGTATGGTTGTTTACCTTCT
TTTAAATTTTCATTATGGAGTAGAGTAGTTGGAATAAACTGGTTTAAGTG
GTTTTTTTATGATCATATAACGAAAAGCTAATAAATGACCCTGCCCATCA
GACAAAATTTTGACCCTGTTTGACGAAATTTGTACCCTGTTAGACGCAAG
AACCCACTCTGACAAGTGGTGGGAAAGACCAAAAATCAACCCTGTCGGAT
TAACTTTCAAAATTAGTTGATTTGCAACCTGTGAGCTTGTAAAAGGTACT
CATACCAGTGGGACGTCTTTTACCCCTATTTCGCTTGAGTAACCACTCTT
GGTCCGTAATATTGATAATACTATATTGTTATATCAGTGTATCATGTCTC
ATGTCTATCATACGTTTCCCTAAACCCTGCTTAGAACATGGGCCCCGACG
AGCCATTTGGAGTGGGGCTTCCATTATTTTGGAAAAAAATGTCGCCCATC
ATGGTTAGACAACAAAGAAACCCACCATGGTTAGGCAACAAAGAAACCCA
CCATGGTTTTAGGCAACAAAGAAAAACGTTCATTCTTTACACCCTCAAAA
CACCCTAAGACGTTTAGGGAGAACAACAGTTTTAATGATTTGATTTAGTC
TGTTTAAAGTTGTTCTAATGTTAGGTTAAACAGGTTATCGTAACAATTTG
ATTTTTTTGCTTTAATCTATAGGTTATTGGTGATAACAACGTTGCAGTAC
CCAGCCACTTGTTCAAGATAATCCTTGTGGAGAACCACGGACGACCCATC
GCTGCAGGAGCTTTCGTTGTTCCAAATGCACCGATTGCAGATGATAAAGT
ACTGACTGATTATCAAGTTTCGTTANGACCCTGCCCAACAGGCAAAATTT
GTACCCTGTTTGACAAAATTCGTACCCTGTTCTATACAAAAATCAAACCT
GACAAGTGGTGGGAATGACCAAAAATCAACCCTGTCAGATTAACTTTCAA
AATTGATTTGCGACCCTGTCAAGACATTTTAAGAGCTTGTAAAAGTAACC
CATACCAGTGGCACGTCTTTTACCCCTATTTCGCTTGAGTAACCCCTCTT
GGCCCGTAATATTGATAATACTACATATATTTTTATATATCATTGTAGGT
AGAGAGTCTATCATCATGCTTCCCTAAACCCTGCTTGGAACATGGGCCCC
GGCAAGCCATTTGGAGTGGGGCTTCTAATAATTTGGGAAAAAAATTCGCC
CACCATGGTTAGGCAACAAAGAAACCCACCATGGTTTTAGGCAACAAAGA
AATCCACCATGGTTTTAGGCAACAAAGAAAAACGTTCATTCTTTACACCC
TCAAAACACCCTAAGACGTTTAGGGAGAACAACAGTTTTAATGATTTGAT
TTAGTCTGTTTAAAGTTGTTCTAATGTTAGGTTAAACAGGTTATCGTAAC
AATTTGATTTTTTTGCTTTAATCTATAGGTTATTGGTGATAACAACGTTG
CAGTACCCAGCCACTTGTTCAAGATAATCCTTGTGGAGAACCACGGACGA
CCCATCGCTGCAGGAGCTTTCGTTGTTCCAAATGCACCGATTGCAGATGA
TAAAGTACTGACTGATTATCAAGTTTCGTTATCACAGATCGAAAATATGA
CTGGATTCATGTTTTTCCCTAAAATAGACATGAACAATTTACCAAATTTA
TGTTCGAGAGACAACTGTCAGTTGCTAACAAAAAATACGGCTGATTTGAA
TATTTTGATGAAAAACTTGAAACGTGTTCGGAGTAAAGAGGAATTAGACA
ATCTGTGGAATCAAGTTCTTCAAAAGAACGTACAGCTCGACCAAAAATTC
ATGCAAATGTACTGGGAGAAACGGAAGACATATGAAAAAGATAATTAAAT
TGACTTTGAGTGTGCATTGTTTACAAGAGAAATTAGTATCAAGAAAACAA
GATGTGTTTTCAGACTTGTTTTCGTTTAATCAGGTATGCAAGGTATGATA
ATGTTTTTAACTGTGAGCTTAGTGTCTGATTTCGAGTTACCCTTTTGAAA
AGTCCTTGTCGACTTAATCACGAAAAATTGACCATTTTACACACACAGTG
TAAATAATAGGTGGAAGGTGTTTTTTTAAAGGTGTGTCTTTGGCTGTTCG
ACTTAGGTGATTGTGAATATTTTGTGAATTCGCTTAATTTTTTTTGAGAA
TTTTCTAAATTTTTATTGGAGTATTTATAGATGTTGTTTATAAAATTTTA
TACTGAGAAAATAAAAAAATTGAATTAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050564-exon-scaffold_179-1575043694:547641..548029 | TCONS_00050564-exon-scaffold_179-1575043694:547641..548029 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1575043694:547199..547407 | TCONS_00050564-exon-scaffold_179-1575043694:547199..547407 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1575043694:544947..545751 | TCONS_00050564-exon-scaffold_179-1575043694:544947..545751 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1510915933:547641..548029 | TCONS_00050564-exon-scaffold_179-1510915933:547641..548029 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1510915933:547199..547407 | TCONS_00050564-exon-scaffold_179-1510915933:547199..547407 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1510915933:544947..545751 | TCONS_00050564-exon-scaffold_179-1510915933:544947..545751 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1491911889:547641..548029 | TCONS_00050564-exon-scaffold_179-1491911889:547641..548029 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1491911889:547199..547407 | TCONS_00050564-exon-scaffold_179-1491911889:547199..547407 | Clytia hemisphaerica | exon |
| TCONS_00050564-exon-scaffold_179-1491911889:544947..545751 | TCONS_00050564-exon-scaffold_179-1491911889:544947..545751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:544947..548029 - |
Blast
BLAST of TCONS_00050564 vs. Swiss-Prot (Human)
Match: EXOG (Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EXOG PE=1 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 2.342e-88 Identity = 134/290 (46.21%), Postives = 191/290 (65.86%), Query Frame = 2
Query: 140 VINRYGLP-TGDFVMQYSNHVLQYDTARKIPKWVLEHMSKDDLKGHAERSQCNFKVDQSVPKQFRSHNEDYLGSGFARGHMVPASDVKKSQESMQETFYLTNILPQDFDNNGGFWYRMENYCRSLTNRFTDVYVISGPLFLSHFVQN-KKMVTFQVIGDNNVAVPSHLFKIILVENHG---RPIAAGAFVVPNAPIADDKVLTDYQVSLSQIENMTGFMFFPKID-MNNLPNLCSRDNCQLLTKNTADLNILMKNLKRVRSKEELDNLWNQVLQKNVQLDQKFMQMYWEK 991
V+ ++G P TG Y+NH L YD A+++P+WVLEH+SK + G A+R C FK D ++P F + NEDY+GSG++RGHM PA + K S ++M ETFYL+NI+PQDFDNN G+W R+E YCR LT RF DV+V+SGPL L + KK+V++QVIG++NVAVPSHL+K+IL P+A GAFVVPN I LT++QVSL +E ++G +FFP +D +++ N+CS D C+LL L + + ++ RS L+ + + ++ D FM Y +K
Sbjct: 61 VLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHLDRTSDIRNICSVDTCKLLDFQEFTLYLSTRKIEGARSVLRLEKIMENLKNAEIEPDDYFMSRYEKK 350
The following BLAST results are available for this feature:
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