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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047943 ID=TCONS_00047943|Name=TCONS_00047943|organism=Clytia hemisphaerica|type=transcript|length=1220bp
TTATaaatgaatattaaatgaaaTTTAACGTTTTGCCTGAATTTAGCAAA
CAAAATATTGATGATGAATTTAAAGGCACTATTATTCTGGATAGCTTCGT
TGCAATTGGTTAGAACAGAAGAAATTTATGGTAACATGAAACAAGATTTT
TTCGCATGTGATAGAATAAAGAATGTTACGATTGTTCCTTTTATAAGGGA
AACTGTTATCACACGCTCAATGTACAGCTCAAGAGAGCCACAACTGACGT
ATCTTATTAAATCGTTGTTAGATACTCCTTGTACTACAGTTTGGGTTTAC
TCGCCATTGGAAGATATATCGATTGCACAGAACAAAGACAATTCTAACAA
TTTTTTAGAGACAAAGATTCAAGCAATGGATCTACCTGATACAAACGTAC
TTATCGATTTTCTAAATGAGGTTCAAAAATTAGCTGTTGAAGAAAACCAA
CAAACATTATTGTTCATTACTAATTACAATCACTTAAGCAAGTCACAATT
ACCTGAGCAAGAGATATCACTAATTGTAGATTGTTTGAAGGAGTCGACGG
AGTATACGAGCGTGGTAATGTGGTGCCATTATGAAAACGAAATATGTAGT
CAATCAGAAAAGTTAATACCTCTACCAAAAATAATATATGATGTTTACTC
AGAAGATTTCAATCCACACGTGCACAAGGTCTTACTTGATGTGATAATCG
ATAAAGATTATGACCGATTCAAAGAATATGATGATCTTGATTGTCGAAAC
AAATCCCGAAAACTTCATCTATTGTATACTCCAATGACAATGCTCGGTTG
GACGTATTCCATTAAAACCATGGCTaaatttttccaatttaaaTTCAAAG
TACGTGTCCTGCAATTACAATTGTTCCTTTTGTTCGCTACTAATGATGGC
TTTAAATATTTAAACGAAGCGAAagcaattcttataaaaactaaTGGTGA
CGACATCATAAACATATTTATAAAACCTAAATGGGAAAGTCTTCCCATTC
CAGAAGAGCTGAAACATTTGAGTAAATGGGTGATAGTGACCGTCGACAAT
TCAATACATGATTCACCGAGACTTGAAAAAGACGGAACAATAACCATATG
GGAGGAAGATTTAGCAAGTCCCTTATTGTTTCATATGTTGATTAAGAAAT
TCAAAGAGTTGATTTGTTAAGTCATTTATCATCACTCTAGAtcttataaa
aattattttttataaaagta Run BLAST on NCBI protein sequence of TCONS_00047943-protein >TCONS_00047943-protein ID=TCONS_00047943-protein|Name=TCONS_00047943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MMNLKALLFWIASLQLVRTEEIYGNMKQDFFACDRIKNVTIVPFIRETVI
TRSMYSSREPQLTYLIKSLLDTPCTTVWVYSPLEDISIAQNKDNSNNFLE
TKIQAMDLPDTNVLIDFLNEVQKLAVEENQQTLLFITNYNHLSKSQLPEQ
EISLIVDCLKESTEYTSVVMWCHYENEICSQSEKLIPLPKIIYDVYSEDF
NPHVHKVLLDVIIDKDYDRFKEYDDLDCRNKSRKLHLLYTPMTMLGWTYS
IKTMAKFFQFKFKVRVLQLQLFLLFATNDGFKYLNEAKAILIKTNGDDII
NIFIKPKWESLPIPEELKHLSKWVIVTVDNSIHDSPRLEKDGTITIWEED
LASPLLFHMLIKKFKELIC Run BLAST on NCBI transcript from alignment at scaffold_139:37451..38670 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047943 ID=TCONS_00047943|Name=TCONS_00047943|organism=Clytia hemisphaerica|type=transcript|length=1220bp|location=Sequence derived from alignment at scaffold_139:37451..38670 (Clytia hemisphaerica)
tacttttataaaaaataatttttataagaTCTAGAGTGATGATAAATGAC
TTAACAAATCAACTCTTTGAATTTCTTAATCAACATATGAAACAATAAGG
GACTTGCTAAATCTTCCTCCCATATGGTTATTGTTCCGTCTTTTTCAAGT
CTCGGTGAATCATGTATTGAATTGTCGACGGTCACTATCACCCATTTACT
CAAATGTTTCAGCTCTTCTGGAATGGGAAGACTTTCCCATTTAGGTTTTA
TAAATATGTTTATGATGTCGTCACCAttagtttttataagaattgctTTC
GCTTCGTTTAAATATTTAAAGCCATCATTAGTAGCGAACAAAAGGAACAA
TTGTAATTGCAGGACACGTACTTTGAAtttaaattggaaaaatttAGCCA
TGGTTTTAATGGAATACGTCCAACCGAGCATTGTCATTGGAGTATACAAT
AGATGAAGTTTTCGGGATTTGTTTCGACAATCAAGATCATCATATTCTTT
GAATCGGTCATAATCTTTATCGATTATCACATCAAGTAAGACCTTGTGCA
CGTGTGGATTGAAATCTTCTGAGTAAACATCATATATTATTTTTGGTAGA
GGTATTAACTTTTCTGATTGACTACATATTTCGTTTTCATAATGGCACCA
CATTACCACGCTCGTATACTCCGTCGACTCCTTCAAACAATCTACAATTA
GTGATATCTCTTGCTCAGGTAATTGTGACTTGCTTAAGTGATTGTAATTA
GTAATGAACAATAATGTTTGTTGGTTTTCTTCAACAGCTAATTTTTGAAC
CTCATTTAGAAAATCGATAAGTACGTTTGTATCAGGTAGATCCATTGCTT
GAATCTTTGTCTCTAAAAAATTGTTAGAATTGTCTTTGTTCTGTGCAATC
GATATATCTTCCAATGGCGAGTAAACCCAAACTGTAGTACAAGGAGTATC
TAACAACGATTTAATAAGATACGTCAGTTGTGGCTCTCTTGAGCTGTACA
TTGAGCGTGTGATAACAGTTTCCCTTATAAAAGGAACAATCGTAACATTC
TTTATTCTATCACATGCGAAAAAATCTTGTTTCATGTTACCATAAATTTC
TTCTGTTCTAACCAATTGCAACGAAGCTATCCAGAATAATAGTGCCTTTA
AATTCATCATCAATATTTTGTTTGCTAAATTCAGGCAAAACGTTAAAttt
catttaatattcatttATAA Coding sequence (CDS) from alignment at scaffold_139:37451..38670 >TCONS_00047943 ID=TCONS_00047943|Name=TCONS_00047943|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_139:37451..38670 (Clytia hemisphaerica)
TTAACAAATCAACTCTTTGAATTTCTTAATCAACATATGAAACAATAAGG
GACTTGCTAAATCTTCCTCCCATATGGTTATTGTTCCGTCTTTTTCAAGT
CTCGGTGAATCATGTATTGAATTGTCGACGGTCACTATCACCCATTTACT
CAAATGTTTCAGCTCTTCTGGAATGGGAAGACTTTCCCATTTAGGTTTTA
TAAATATGTTTATGATGTCGTCACCAttagtttttataagaattgctTTC
GCTTCGTTTAAATATTTAAAGCCATCATTAGTAGCGAACAAAAGGAACAA
TTGTAATTGCAGGACACGTACTTTGAAtttaaattggaaaaatttAGCCA
TGGTTTTAATGGAATACGTCCAACCGAGCATTGTCATTGGAGTATACAAT
AGATGAAGTTTTCGGGATTTGTTTCGACAATCAAGATCATCATATTCTTT
GAATCGGTCATAATCTTTATCGATTATCACATCAAGTAAGACCTTGTGCA
CGTGTGGATTGAAATCTTCTGAGTAAACATCATATATTATTTTTGGTAGA
GGTATTAACTTTTCTGATTGACTACATATTTCGTTTTCATAATGGCACCA
CATTACCACGCTCGTATACTCCGTCGACTCCTTCAAACAATCTACAATTA
GTGATATCTCTTGCTCAGGTAATTGTGACTTGCTTAAGTGATTGTAATTA
GTAATGAACAATAATGTTTGTTGGTTTTCTTCAACAGCTAATTTTTGAAC
CTCATTTAGAAAATCGATAAGTACGTTTGTATCAGGTAGATCCATTGCTT
GAATCTTTGTCTCTAAAAAATTGTTAGAATTGTCTTTGTTCTGTGCAATC
GATATATCTTCCAATGGCGAGTAAACCCAAACTGTAGTACAAGGAGTATC
TAACAACGATTTAATAAGATACGTCAGTTGTGGCTCTCTTGAGCTGTACA
TTGAGCGTGTGATAACAGTTTCCCTTATAAAAGGAACAATCGTAACATTC
TTTATTCTATCACATGCGAAAAAATCTTGTTTCATGTTACCATAAATTTC
TTCTGTTCTAACCAATTGCAACGAAGCTATCCAGAATAATAGTGCCTTTA
AATTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047943-exon-scaffold_139-1491911889:37451..38670 | TCONS_00047943-exon-scaffold_139-1491911889:37451..38670 | Clytia hemisphaerica | exon |
| TCONS_00047943-exon-scaffold_139-1510915933:37451..38670 | TCONS_00047943-exon-scaffold_139-1510915933:37451..38670 | Clytia hemisphaerica | exon |
| TCONS_00047943-exon-scaffold_139-1575043694:37451..38670 | TCONS_00047943-exon-scaffold_139-1575043694:37451..38670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:37451..38670 . |
Blast
The following BLAST results are available for this feature:
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