TCONS_00047836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047836
Unique NameTCONS_00047836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047836 ID=TCONS_00047836|Name=TCONS_00047836|organism=Clytia hemisphaerica|type=transcript|length=619bp
GATAAAACCGTGAAATTTGCAAGTGGTGGTCCTAGACCTGTAACATTTAC
GAAGCTCACTCAAAATTACGTCCCTTCAGAGAAGGCAAACAAGCGAACAG
TGCAGAAAAGGAACAGAGAAATGATGGAAAATATGAGTGTGGTTGCTGGG
CCTTCCCAAAAGTCGATCAATTTCCAATCTGCTAAACTTGTGAATTCGTT
TACAGAGGCTGAACGCCAATCCATCTTAGAGCATGCTAACATTAGACCAG
TCATAGAAGGAAGAAAGATGTTAGCAATGAGACTTCAATTTGGTTTATCA
TGGGGCATGTTACGTGGAGTTTCAGGGTGAGATAATCAAATTAAATCTAG
TTCCATAAGCTGATTGCAGAGTGATATAAAAAATTTAATATTGGATCGAT
ACAATGGTATACAATAAAAATTTTAAATAACTTATCACAAGTATCTGTAT
ATATTACACATTTACAGCTGGCTAAGAAGCTTCAACATCAAACCAGAAAG
CGAAGCAAAGCAACGTCAGACGATGAAACGAATCGAGAATGCTGTTGTCA
AAGGAATCTTGGCAACTTTCACCTTTCCATGTCAAGAAGAGAAAGGAAAG
TTCATCGTGGGTTCTTCTG
Run BLAST on NCBI

protein sequence of TCONS_00047836-protein

>TCONS_00047836-protein ID=TCONS_00047836-protein|Name=TCONS_00047836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
DKTVKFASGGPRPVTFTKLTQNYVPSEKANKRTVQKRNREMMENMSVVAG
PSQKSINFQSAKLVNSFTEAERQSILEHANIRPVIEGRKMLAMRLQFGLS
WGMLRGVSG
Run BLAST on NCBI

transcript from alignment at scaffold_138:41844..42696+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047836 ID=TCONS_00047836|Name=TCONS_00047836|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at scaffold_138:41844..42696+ (Clytia hemisphaerica)
GATAAAACCGTGAAATTTGCAAGTGGTGGTCCTAGAGTAAGGCCTTTTTT
CTTATGGTTATCTTTTTACACAAAGTAAAATAGTGTATTTTAAACATAAA
CTACTAGATTGATCAAATAGCGTTCTTTAAATGACTTTATATATAAGACC
TTTCCTGCATCTACTCTGCATCTTCCACTCATTTAAAAAAAATTAAGAAA
TGAACATCAGTCAGTTGACCTGTCTCAAACGTTTGCAAAAAAATAATTGA
TAAATGCCTCTTTCTCATAGCCTGTAACATTTACGAAGCTCACTCAAAAT
TACGTCCCTTCAGAGAAGGCAAACAAGCGAACAGTGCAGAAAAGGAACAG
AGAAATGATGGAAAATATGAGTGTGGTTGCTGGGCCTTCCCAAAAGTCGA
TCAATTTCCAATCTGCTAAACTTGTGAATTCGTTTACAGAGGCTGAACGC
CAATCCATCTTAGAGCATGCTAACATTAGACCAGTCATAGAAGGAAGAAA
GATGTTAGCAATGAGACTTCAATTTGGTTTATCATGGGGCATGTTACGTG
GAGTTTCAGGGTGAGATAATCAAATTAAATCTAGTTCCATAAGCTGATTG
CAGAGTGATATAAAAAATTTAATATTGGATCGATACAATGGTATACAATA
AAAATTTTAAATAACTTATCACAAGTATCTGTATATATTACACATTTACA
GCTGGCTAAGAAGCTTCAACATCAAACCAGAAAGCGAAGCAAAGCAACGT
CAGACGATGAAACGAATCGAGAATGCTGTTGTCAAAGGAATCTTGGCAAC
TTTCACCTTTCCATGTCAAGAAGAGAAAGGAAAGTTCATCGTGGGTTCTT
CTG

Coding sequence (CDS) from alignment at scaffold_138:41844..42696+

>TCONS_00047836 ID=TCONS_00047836|Name=TCONS_00047836|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_138:41844..42696+ (Clytia hemisphaerica)
GATAAAACCGTGAAATTTGCAAGTGGTGGTCCTAGACCTGTAACATTTAC
GAAGCTCACTCAAAATTACGTCCCTTCAGAGAAGGCAAACAAGCGAACAG
TGCAGAAAAGGAACAGAGAAATGATGGAAAATATGAGTGTGGTTGCTGGG
CCTTCCCAAAAGTCGATCAATTTCCAATCTGCTAAACTTGTGAATTCGTT
TACAGAGGCTGAACGCCAATCCATCTTAGAGCATGCTAACATTAGACCAG
TCATAGAAGGAAGAAAGATGTTAGCAATGAGACTTCAATTTGGTTTATCA
TGGGGCATGTTACGTGGAGTTTCAGGGTGAGATAAAACCGTGAAATTTGC
AAGTGGTGGTCCTAGACCTGTAACATTTACGAAGCTCACTCAAAATTACG
TCCCTTCAGAGAAGGCAAACAAGCGAACAGTGCAGAAAAGGAACAGAGAA
ATGATGGAAAATATGAGTGTGGTTGCTGGGCCTTCCCAAAAGTCGATCAA
TTTCCAATCTGCTAAACTTGTGAATTCGTTTACAGAGGCTGAACGCCAAT
CCATCTTAGAGCATGCTAACATTAGACCAGTCATAGAAGGAAGAAAGATG
TTAGCAATGAGACTTCAATTTGGTTTATCATGGGGCATGTTACGTGGAGT
TTCAGGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030446XLOC_030446Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047836-proteinTCONS_00047836-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047836-exon-scaffold_138-1491911889:41844..41879TCONS_00047836-exon-scaffold_138-1491911889:41844..41879Clytia hemisphaericaexon
TCONS_00047836-exon-scaffold_138-1510915933:41844..41879TCONS_00047836-exon-scaffold_138-1510915933:41844..41879Clytia hemisphaericaexon
TCONS_00047836-exon-scaffold_138-1575043694:41844..41879TCONS_00047836-exon-scaffold_138-1575043694:41844..41879Clytia hemisphaericaexon
TCONS_00047836-exon-scaffold_138-1491911889:42114..42696TCONS_00047836-exon-scaffold_138-1491911889:42114..42696Clytia hemisphaericaexon
TCONS_00047836-exon-scaffold_138-1510915933:42114..42696TCONS_00047836-exon-scaffold_138-1510915933:42114..42696Clytia hemisphaericaexon
TCONS_00047836-exon-scaffold_138-1575043694:42114..42696TCONS_00047836-exon-scaffold_138-1575043694:42114..42696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:41844..42696 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89934	1.81392	0.221834	0.350083	11.1309	6.05596	5.54851	4.61605	2.92894	2.91638	1.7875	2.19541	1.41324	1.85279	3.81369	3.01949	5.18797	3.39458	2.30208	1.25071	8.95493	11.4483	2.16972	3.27234	0.141696	0.402113	1.41674	0.648988	1.43903	1.57014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top