TCONS_00047833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047833
Unique NameTCONS_00047833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047833 ID=TCONS_00047833|Name=TCONS_00047833|organism=Clytia hemisphaerica|type=transcript|length=249bp
GAAGAGTTTCAAACATGGTTCATTTCGCGCTCACTTAATCCAAAAGACAC
GTGTTCCATCATATATTATTGTCGTGATATGATCAAAGATGAAAAACCCA
TTTCCAAAGCCACATGGAAAGACATCAAATCTGAGCACTGTCTGAAGTTG
ACTTGAAAAATCGAATCGCTTAGATCCACGAAACGTTAAATCAAAAAGGA
CAGtgataaaaaatcttttgagaAAGCATTGGAAATTTCTAGGAAGACG
Run BLAST on NCBI

transcript from alignment at scaffold_137:78782..79030

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047833 ID=TCONS_00047833|Name=TCONS_00047833|organism=Clytia hemisphaerica|type=transcript|length=249bp|location=Sequence derived from alignment at scaffold_137:78782..79030 (Clytia hemisphaerica)
CGTCTTCCTAGAAATTTCCAATGCTTtctcaaaagattttttatcaCTGT
CCTTTTTGATTTAACGTTTCGTGGATCTAAGCGATTCGATTTTTCAAGTC
AACTTCAGACAGTGCTCAGATTTGATGTCTTTCCATGTGGCTTTGGAAAT
GGGTTTTTCATCTTTGATCATATCACGACAATAATATATGATGGAACACG
TGTCTTTTGGATTAAGTGAGCGCGAAATGAACCATGTTTGAAACTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030443XLOC_030443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047833-exon-scaffold_137-1491911889:78782..79030TCONS_00047833-exon-scaffold_137-1491911889:78782..79030Clytia hemisphaericaexon
TCONS_00047833-exon-scaffold_137-1510915933:78782..79030TCONS_00047833-exon-scaffold_137-1510915933:78782..79030Clytia hemisphaericaexon
TCONS_00047833-exon-scaffold_137-1575043694:78782..79030TCONS_00047833-exon-scaffold_137-1575043694:78782..79030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:78782..79030 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.34616	9.11397	0.88185	0	0	1.65995	4.00532	3.74973	0.656319	0	3.1563	0	1.55396	0	0.884509	0	0	0	0	0.86637	0	0	5.35806	4.05938	3.34485	2.9852	1.06795	0	6.05121	4.40373
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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