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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047781 ID=TCONS_00047781|Name=TCONS_00047781|organism=Clytia hemisphaerica|type=transcript|length=350bp
GCTAAACCCAAATGCATCAAATCACACTTGGATACTTGGTCGTGTTGTGT
GCTCTACAGTTTCTGCAAATCCACACAACTCTACTGTCGAATTTGGAGCC
AACTCTCAGAATGATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATCA
TGCTTCAATGGATTCTGCCGCCGCTCGCAACACCTCTTTTGAATATTCAA
CAAATCATGTGAACAATCAACTCAGTTCTTTGATTGCACCTGCTTCAATT
GAGGATTCAACATATTCTACAGTTTCTCACAACACTTCTTTGGTTGCAAG
CTCTTCGAATGACCAGCTTCTTTCTTCGATTGCACCAAACTCAATTCAAG Run BLAST on NCBI transcript from alignment at scaffold_136:215717..222692- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047781 ID=TCONS_00047781|Name=TCONS_00047781|organism=Clytia hemisphaerica|type=transcript|length=6976bp|location=Sequence derived from alignment at scaffold_136:215717..222692- (Clytia hemisphaerica)
GCTAAACCCAAATGCATCAAATCACACTTGGATACTTGGTCGTGTTGTGT
GTAAGTACTGCTTTGGAAAATTGAAAGGTTGGAAGACTATACATACATCA
TTCCTCTGACTGCAAACGTACAAATAAACAGCACTGATCAAGCAGAAAAA
CTTTTATTAAAAACCAAGTTAAGTGGTTTGGTTGGCTGTGTGGTTGGTTC
TTAGCTAAAATGTGTTAAACATTAGGGTATTATAGATAAACTAACTTTCA
ATCTTTTATTTGATCACTCATCAGGCCAGGGGGTCTGCCTTGCAGGTCAC
AAGTCTGTCTGTTCGTGTCTGGCTAGATATTGCGGATATTGTCATTATTT
TTTCACTTTTGAAATCTTGAAAACAAGGATGAAGGAGTGCTCTGGCACCT
CTTTGGTACACTTGTGGCAGTGGGTGTTCTGCTGTCGTCTGAAAAATGGA
CCCTACTACATGTAGCCTGGATATCCAGACCGTAAACTATTTCACCGTCT
ATCTTTTCTCTGGTTGTTTATGGTCTGGTCCAAGTAACTGCAGGTATATT
TTTCCCTGCGACGAGTGAATCTGATTGGCCAGTTCTCTACGAGTCACTGA
GCAGAATTTTTTACTTGCATTATTTTCTATACGCTCGCATAATTTATGGA
AAAAAAGCTGACATTCTTGCAAAAACGACCCTGCCGGTGCAGGACCCTGC
TGACGCACCGGACTGTCCGGTGGATTTGTCCGGTGGCAAAAAGTATCCTT
TCACTACACCGGACGCAATAAGTCCGGTGTCAGTCCGGTGTTGCATACGG
GGAATTTTGGACACCGGACATTTATGATTACGCACCGGACTGGTCATGTC
CGGTGTTTTGATTGTCCGGTGGAAAAAAGCATCCTTCTCCGACACCGGAC
ATCCGATTTCCTTAAGTCCGGTGTAGAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTAGTCCGGTGTAGAGATGGTCCGGTGGTAAAAAGA
TTCTCATTTTACACCGGACTTTCGCGTGTCCGGTGTTCGTTAAGTCCGGT
GCGTCGGCAGGGTCCTGCCGGTGCACCTGACAGTCGGGATGCTGTTGTTG
GGTGTTCGAAGTTAGAAATTTAAACACCCAACAGTCGGGTGCATTTTGTC
GGGTGCTACATCTTGGCGCTTTTAACAAAACAGCACCCCACATGCAACGA
GTGGGTGGCGATTTCCAGAGGGCGGAAACAAGAGGGTCTTCTTACTACCA
ACAAAATGCCATCAGGTGGCGTTGGGTGTTTATTGTCAGGTGCTCTCACA
AAGTTAGGAATTTTAGCACCCGACTGTTGGGTGTGCTATTGTCGGGTGTT
TTCGCAAATTTAGAAATTTCAGCACCCGACTGTCGGGTGCACCGGCAGGG
TCGTTGCAAAATTATGTAAACAAATGAAAATGAAAATACCGTACAGGTTT
ATTTTGAAAACAAAATGGCTGCTTGAAAGAAGCCTTTGCAAATGTGGCTG
ATGTTTTGATGTGGTTTAAAGTAAATTTAAAAGTTTTTTGAGTTTTTGAA
AGTGGTTTTATGGTAAGTAATTATGTGTGTCTGCCTGGCCCGGCTGCCTA
GTGCCTAGGTTTCCAAAGTTTTGAGATTCTGTAAACAAGGGTTCACTTAT
ACTGACCGTATCAAACAAACTGTGCCAGACTTTTTAGTTGTACCAAACTC
TAAACTTTGTATGTTAAGGTATATAAGATTTTTTTTTTAAATTTTGAGTC
TGGATTCCAGGCTATACTCCAGACGGTACTCTAGGCAGTACTAATCGAAC
ATTCGATTGTAATTGAAGTATAATCAATAATGCATGATTGAAAATGATCA
AAAAAGGTGGTCAAAATTACCACTTATCGATTCTATTGGTAATCAAATAC
TCACTCAGTTAGGAACATTTGGGGAGTACCAGTACGGGGCCGCAATCAAA
CCGCACTCATAAAAAAATATGTTCTTGTCTTTTTTATACTATTTTTTGTC
TAGACAATATAACAAACATAGCTACTATAAGCAGACTGTGCCTTAAATTG
GCTGTAAAAAAATTTGCGTCGGTAGTAATTTCTTCAACTTTCAACAATGC
TAAAACAACCCTATTTAAACCACAGGCATTTTTCATCATTTTCCTTCTTC
ATCTGATCAATGAAGTTAAGCACACAACATATTCTTATGATTATTGTTAT
TCACTGAAACACCATCCTTTATCATCATTGATATTGTTATTATTATTATT
ATTATTTAGTTAATGAAAAATGTATTGTTGTCATTGCGCATATCCCATTG
CATCTAATCAAGTTTTTTGTACTGCATGTGGTAAACGAAATACTACACAA
AATACTGGTGCCAGCACAAGTACATCAAATCAAGGAAAAAAAACATTCCA
GCAATTCTTAGAAGAGAAGAAGACTGATCGTATATGCAAGTCCAAAAAAC
AAAAGATTTCTAAAGTTACTGTTAATGTCTCTGTTTTAAATGAATTTGTT
GGGCAACAGTTCGAGACTTATTACAAACAAGTACCAAACTCCCGTCTCCC
ACTTGAATGTGAGCCTCAATGGGACTACTACAAATTACGAGAAGCTGCTT
TTGATAAACAAAAACGTTACAACAAACTGATTGCATCAAAACAGCTGGAA
GATGTAAAACTTGTATATAATAAGGATGGTGATATTTGTAAAACAATTCC
AGGAACTAACATTCCATTCACATTGGAAAAATATCAAAGAGATATCTGTA
AGAAATACAAAGATATGTTGTTTTATCTGTTGCCAATGTTCATTGAAGAC
GAAGACGATGATGAACCGCTTCCATCTGCACTAAGCAAAAGACAAAAGTA
AGCAATCAATATCTTTTGGTTTACCTTTCAGAAACAATTTTTGGCAGAAT
TTAAATTTTTTTTCTATTCAGGAAAAGTTTTGAGGAAATGTAAATAAAAC
ATTACAAATTTTGAAGATTGTTGCAGGAGAAAGATTCTACCAGGATTTCT
TTCAAAAATAATTCAAAATTGGGCTTAAAAGTCAAAAATGCTAACAAAAA
TTTGACAAAGTTTGACGTCTTTGAGATTGTGACCATATTTTTTCCATGAG
GAAATTAAGACACCAAATTTGACCCTGGTCTACAGTAGATTCTGTCTTCT
TGTGAGCTGCTTTAAAGTGTACCACTTACTTAGCAACCCTGTCAAACCAG
TAAGATCCCACCCGCCTCGTCCTTATTAATATGGGTGGTGCCAAAGGCTA
AAAGAAGATATCTTAAAGCTATATACAATTTTCTTTCTAGTACTGTATCA
CAGTAAATTATTAATTCAATGCGTTTTTTTTAGTGACGAGAATCCAGTGA
ATCCATTACCTTTCAATATCTTTGATACGGGAGCAGCAATATCATTCAAC
AATAATAGTATTTTTGCATGATAAAAATCATTAATATTGTGTTTTTATTG
TGATTTATGAAATGTTTTATGAATTGGCTTCTCACAAAAATGACATTTTG
GCTTCATTTGATTATTCCTGATAATTCATAACATTTTTTCAAATCATTAC
ACTACTATACAGTTATCTAAGAATTCCAATCTTAATAACTCAATATTTAT
TGAATTTCAAAATTCTTTTAGGTCTGTGTAATTTAAGATGCACGATTCAT
GCATAATTCATGCTAATCATTTTAATGCATGCATATTATAGATAATGTTT
AAGTGGGTTCTTTTGGTTTGCTTAAAAGTTAAAAAATATAACATTCGTAT
TTTCGTCTGATCTAAATATTTTTCGACTGTTTTTATTTATCAAAACTCAA
GATTTACTAAGGCAAATTTCTGAGGAAGTAGGACAAGAGAGGTATTTCCA
AACTTTGTAAACCCTCACTTTATGGGTATTTCTGTTAATTTAACTCACCC
AGTCATTCTTTTATAAAAAATGAGTTGGGTAAAAAGTTAAAACATTCAGT
AGAAATTGTTTAGTTATAAATATTGAAATATAGCGTAAAAAAATAATGCC
TTTAAACGGCTGGTTTATTTTGAATTCAAAATTGTATTTCTCTATTGATA
GGCTCTACAGTTTCTGCAAATCCACACAACTCTACTGTCGAATTTGGAGC
CAACTCTCAGAATGATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATC
ATGGTAAGTTTGTTGATAAGTGAAAATTTTTAATTAAAGCAGGTTTGTGA
AAATTTATCATTCAAGCATATTAAAGAATGTTCTCCTAGTATATTCCTTT
CTTTTGACACTTTGTATTGATGAAATGTATTTTGTTATTGACAGCTTCAA
TGGATTCTGCCGCCGCTCGCAACACCTCTTTTGAATATTCAACAAATCAT
GTGAACAATCAACTCAGTTCTTTGATTGCACCTGCTTCAATTGAGGGTAT
GTTTTTAATTGTGTTGAGTGTTTATACCCCCCCCCCCCTTAAAAGTGAGG
TTACACCCCAAAAAAGATGGAGGCTAAATCTGTTTCAAATATTTCGGGGG
GGGGGGCTGGCTAGAGTTTACCATACTTTTGACTTTCAAGTATAATCGGT
CTGTCTCTTTCTGTCGTTTTGTATTTTCTCTTTTTTACTCTTTTTTTTTG
CGAGAATATTTTACTGATATGCTTCAGGAAGAAGTTTAAAAGTAAAAGAC
TGAGGACTGAAATTCAATGGGGATTGATATACCCACGTTTTTTATGACTG
GGTATTCAAATTCCATTATTTTCAAATCAGAGAAGTCACAATGTTTTGCA
GTGAGGATTTATTTATTTAATCATTTTCAGCGGAGATAGAAACTTCCACT
GGAGATGATATTTCCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTAAA
CTTAATTTCTAATGGAGATGAAAGTGCACTGTATTCTTGTGATATTTCAG
TGTTTTCAGGGTGATAATAGTACAGTTAAAGGTTCGTATGAGTGATTACT
TTTAGAAGGATCGTTTAATGATTTTTCTAGTACTGATCACTCATAAAGAA
GAACAAACACCCAGGGGTGGATCTAGCGAAACTGCTTTATGAGGGTAACT
CGAATCGGGCAAGCAATTAATAAAGAGTTAATTAGTTAAAAAATTATTTG
CTTTTACAGGCTTTAATAATTCATTTGAGGAAAGTATCTCATATAATTTA
AAAAGAGAGAATTGACCATATTACTTGGAGGTATATTGATCATTTGTGGT
TTTTTCTTACGCACGCGCACAATAGCACGTCAAAAAAACACTTTTCAGCC
TGTACTCGTCAATTGACAATGGCGCGCACAGGCCCCGACAAAGTCAAATC
TTTTCGACCAGTTGCTTTTAAAATTTTTGGCTTGGACCTAAACCTAGGCT
GACGCTATGTATCAGTCAACAAAGTTCGAATACAGTAGTTACTGCTTGAC
ACACCTAGAATCGAGTCTGACAAAGACGCGCCTTCGTTAATCTCAGAATG
TACGTATGTACATCAGATTATATGAATTAACTGTAACAAAAATCAACTCC
TTAAACTCGGAAGAAAACTGATAATTATCATGGCGACTAAGTAAAGCTTT
TCCCAATATCACTTTTTGTAAAAAAATATAGCCTTGACTTCCACAAAAAA
AAGCCTTTGATTTCCATCTTAGATAATGAAGTTGCGCGCAGTGCATTTTA
ACACGTTACTATTGTCAATTTATTATTTGTTCTTGGTAGATTCAACATAT
TCTACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAATTCCATTATTTTCAAATCAGAGAAGTCACAATGTTTTG
CAGTGAGGATTTATTTATTTAATCATTTTCAGCGGAGATAGAAACTTCCA
TTGGAGATGATATTTCCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTA
AGCTTAATTTCTAATGGAGATGAAAGTGCACAGCCACTGTATTCTTGTGA
AATTTCAGTGTTTTCAGGGTGATAATAGTACAGTTAAAGGTTCGTATGAG
TGATTACTTTTAGAAGGATCGTTTAATGATTTTTCTAGTACTGATCACTC
ATAAAGAAGAACAAACACCCAGGGGTGGATCTAGCGAAACTGCTTTATGA
GGGTAACTCGAATCGGGCAAGCAATTAATAAAGAGTTAATTAGTTAAAAA
ATTATTTGCTTTTACAGGCTTTAANGAATCGAATCGAATCGGACAAGCAA
TTAATAAAGAGTTAATTAGTTAAAAAATAGCTTAACTATTTTCTTTTACA
GGCTTTGATAATTTATTTGAGGAAAGTATCTCATATAATTTAAAAAGAGA
GCATTGACCATATTACTTGGAGGTATATTGATCATTTGTGATTTTTTCTT
ACGCACGCGCACAATAGCACGTCAAAAAAACACTTTTTAGCCTGTACTCG
TCAATTGATAATGGCGCACACAGGCCCCGACAAAGTCAAATCTTTTCGAA
CAGTTGCTTTTAAAATTTTTGGCTTGGACCTAAACCTAGGCTGACGCTAT
GTATCAGTCAACAAAGTTCGAATACAGTAGTTACTGCTTGACACACCTAG
AATCGAGTCTGACAAAGACGCGCCTTCATTAATCTCAGAATGTACGTATG
TACATCAGATTATATGAATTAACTGTAACAAAAATCAACTCCTTAAGCTC
GGAAGAAAACTGATAATTATTATGGGGACTAAGTAAAGCTTTTCCCAATA
TCACTTTTTGTAAAAAAATATAGCCTTGACTTCCACAAAAAAAGCCTTTG
ATTTCCATTTTAGATAATGAAGTTGCGCGCAGTGCATTTTAACATGTTAC
TATTGTCAATTTATTATTTGTTCTTGGTAGATTCAACATATTCTACAGTT
TCTCACAACACTTCTTTGGTTGCAAGCTCTTCGAATGACCAGCTTCTTTC
TTCGATTGCACCAAACTCAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047781-exon-scaffold_136-1575043694:222643..222692 | TCONS_00047781-exon-scaffold_136-1575043694:222643..222692 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1575043694:218540..218641 | TCONS_00047781-exon-scaffold_136-1575043694:218540..218641 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1575043694:218297..218398 | TCONS_00047781-exon-scaffold_136-1575043694:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1575043694:215717..215812 | TCONS_00047781-exon-scaffold_136-1575043694:215717..215812 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1510915933:222643..222692 | TCONS_00047781-exon-scaffold_136-1510915933:222643..222692 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1510915933:218540..218641 | TCONS_00047781-exon-scaffold_136-1510915933:218540..218641 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1510915933:218297..218398 | TCONS_00047781-exon-scaffold_136-1510915933:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1510915933:215717..215812 | TCONS_00047781-exon-scaffold_136-1510915933:215717..215812 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1491911889:222643..222692 | TCONS_00047781-exon-scaffold_136-1491911889:222643..222692 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1491911889:218540..218641 | TCONS_00047781-exon-scaffold_136-1491911889:218540..218641 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1491911889:218297..218398 | TCONS_00047781-exon-scaffold_136-1491911889:218297..218398 | Clytia hemisphaerica | exon |
| TCONS_00047781-exon-scaffold_136-1491911889:215717..215812 | TCONS_00047781-exon-scaffold_136-1491911889:215717..215812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:215717..222692 - |
Blast
The following BLAST results are available for this feature:
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