TCONS_00047724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047724
Unique NameTCONS_00047724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047724 ID=TCONS_00047724|Name=TCONS_00047724|organism=Clytia hemisphaerica|type=transcript|length=1559bp
ATCTCCGTAGGGtgctttctttaaaattttcctgTTTAAATGATGATTCT
GAAACTATTCCTCACGTTTTGAGGTACAGATCTTAACCTATTAGTAGagt
ctttgtttttgtttgctgTGTTATTGGATTGATTTTCCGAACGAAAGCCG
AAAAATGCCTGGTGGAAAACGAAAGACAGAAGATACAGAGAACTTGATCA
GCAAAAAACCATACAGTGCTGATGCAAATATCAAAAGTAAATTTGAGTTG
ATGGCAGAAAGTTTTGAAGAAAATGACCAATCAAAAGTTGAACAGATTGA
TAGCGACAAAGCACCATACGTCGTTTTAGTCGGAAATGTCGGAAGTGGAA
AATCAACCATCGTCGAAAAATTGACAGGAGAAAAAGGTCGGAGTTCTTCG
TCAGCAGAAAGTGCAACAAGAGCTGCCGAATATTTCTGGACACCTGATCA
AAGGCTTCTCATCGCTGACACTCCAGGAACCAACCCTCGAAAGGATAAAC
TGGGGCATAACAAAGAAATTGCTGCAGCATTGAGTTATCAAGAAGTATCT
AAATTTCTGATCGTTNGGAGCACAACAATGAAATTGCTGCAGCATTGAGT
TATCGAGAAGTTTCTAAATTTCTGATCGTCGCTAAAGCGCATGTGCGAAT
GGATCAAACGATCAGTGAAATTAAGCAATACAGTGATCGATTTGTTGAAC
TTCCAGATGATTTGGTAGGTGTCATGGTAACACATATGGACATCGACAAA
GAATGGCNCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGCAAT
ACAGTGATCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATGGTA
ACCCATATGGACATCGACAAAGAATGGAGTAAAGAAGACATTACTGAGAT
TCTCGTTGACGATTATGAGCTACCTGACATTGTTTTTTCGCATCAACAAA
AAAAGGGAAATGATCTTTGCCAAGATATCTTGAAAATTTGCGATACCAGT
TACCTAATCGACGTTGGAAGCAGTTTATTTTCACAGCTATTTAGCTTCAG
AGAGAGTaatcgaaaaatattgaaagtgaCCAATGACTTTGTCAAACGAT
TCAAGTTACTGAAAGAAAGTTTTAACAATGAAAGAACGGCCTTTGAGGGG
AGAGAACAGCTGATTATTCATTGTGAATTTTGGGCTTTGTTTCAAAGTTA
TTTGATTGTAATGGCaaaagaagaaatgaaaaacGAATTAGATTTTGATT
ATAATGTAACGGAAGGTGATCTTCAACAAGGATATGTAGTCAACATGACC
AACCAAATTGAAGCTGTCATGGACGACATTCGCCTTTACATTCAACGCCA
CCAGAGTCGGAAAGCTTCAGTAAGATGTTGCTCTCACTGTGGAAAAACTT
GGAATAACGCGGACGTCGAAACATGTGGAATGTCAAACCAAGGAAACCTG
AACAACAATGTAACTCCCTGGGCAATGGCAAATTTTACTTTTGAGGTATT
AAAGGGCACGATTAAAATCTCCAAAGAAGGGCTTTCTACAAGAAATTCCT
CCAGCTGCG
Run BLAST on NCBI

protein sequence of TCONS_00047724-protein

>TCONS_00047724-protein ID=TCONS_00047724-protein|Name=TCONS_00047724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MDQTISEIKQYSDRFVELPDDLVGVMVTHMDIDKEWSKEDITEILVDDYE
LPDIVFSHQQKKGNDLCQDILKICDTSYLIDVGSSLFSQLFSFRESNRKI
LKVTNDFVKRFKLLKESFNNERTAFEGREQLIIHCEFWALFQSYLIVMAK
EEMKNELDFDYNVTEGDLQQGYVVNMTNQIEAVMDDIRLYIQRHQSRKAS
VRCCSHCGKTWNNADVETCGMSNQGNLNNNVTPWAMANFTFEVLKGTIKI
SKEGLSTRNSSSC
Run BLAST on NCBI

transcript from alignment at scaffold_135:59135..61196+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047724 ID=TCONS_00047724|Name=TCONS_00047724|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at scaffold_135:59135..61196+ (Clytia hemisphaerica)
ATCTCCGTAGGGtgctttctttaaaattttcctgTTTAAATGATGATTCT GAAACTATTCCTCACGTTTTGAGGTACAGATCTTAACCTATTAGTAGagt ctttgtttttgtttgctgTGTTATTGGATTGATTTTCCGAACGAAAGCCG AAAAATGCCTGGTGGAAAACGAAAGACAGAAGATACAGAGAACTTGATCA GCAAAAAACCATACAGTGCTGATGCAAATATCAAAAGTAAATTTGAGTTG ATGGCAGAAAGTTTTGAAGGTAAGCAACACCATATTAACCgtctaaatat aaaaaaagatttgttaAAGTTAGACCgttccaaatttttgaaaattctca taaaaaaagacgCTAAAGTAATGTATTCGCGAAAGATATTAgagcaaaat ttcataatattATCAAAGGAACTATTTGTTATAATAGAAGCATTTATATG TCTGAATATCCCTGCCTCgcagccccagtggaactttaTCCCACAGTGGT GACAAagatttctatcaaaatcccaGTGGGGATTTTATTGTTCCCAAACT TAAATTATTCAGTGTGGATAGTTTTGTACAGCAATTTCGCATTGAATTTC GAAAGGGAATGAAGTCAAAGTCCACTACCCAgtagggctgaaattgtagg gtattttgtcCACCGGGGATGCTTAGGAACATACTCTTTAAACTTTTAGA AAATGACCAATCGAATANAATTGTAGAGTATTTTATTCGGGGATGCTTAG GAAAATACTCTTAAACTTTTAGAAAATGACCAATCAAAAGTTGAACAGAT TGATAGCGACAAAGCACCATACGTCGTTTTAGTCGGAAATGTCGGAAGTG GAAAATCAACCATCGTCGAAAAATTGACAGGAGAAAAAGGTCGGAGTTCT TCGTCAGCAGAAAGTGCAACAAGAGCTGCCGAATATTTCTGGACACCTGA TCAAAGGCTTCTCATCGCTGACACTCCAGGAACCAACCCTCGAAAGGATA AACTGGGGCATAACAAAGAAATTGCTGCAGCATTGAGTTATCAAGAAGTA TCTAAATTTCTGATCGTTNGGAGCACAACAATGAAATTGCTGCAGCATTG AGTTATCGAGAAGTTTCTAAATTTCTGATCGTCGCTAAAGCGCATGTGCG AATGGATCAAACGATCAGTGAAATTAAGCAATACAGTGATCGATTTGTTG AACTTCCAGATGATTTGGTAGGTGTCATGGTAACACATATGGACATCGAC AAAGAATGGCNCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGC AATACAGTGATCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATG GTAACCCATATGGACATCGACAAAGAATGGAGTAAAGAAGACATTACTGA GATTCTCGTTGACGATTATGAGCTACCTGACATTGTTTTTTCGCATCAAC AAAAAAAGGGAAATGATCTTTGCCAAGATATCTTGAAAATTTGCGATACC AGTTACCTAATCGACGTTGGAAGCAGTTTATTTTCACAGCTATTTAGCTT CAGAGAGAGTaatcgaaaaatattgaaagtgaCCAATGACTTTGTCAAAC GATTCAAGTTACTGAAAGAAAGTTTTAACAATGAAAGAACGGCCTTTGAG GGGAGAGAACAGCTGATTATTCATTGTGAATTTTGGGCTTTGTTTCAAAG TTATTTGATTGTAATGGCaaaagaagaaatgaaaaacGAATTAGATTTTG ATTATAATGTAACGGAAGGTGATCTTCAACAAGGATATGTAGTCAACATG ACCAACCAAATTGAAGCTGTCATGGACGACATTCGCCTTTACATTCAACG CCACCAGAGTCGGAAAGCTTCAGTAAGATGTTGCTCTCACTGTGGAAAAA CTTGGAATAACGCGGACGTCGAAACATGTGGAATGTCAAACCAAGGAAAC CTGAACAACAATGTAACTCCCTGGGCAATGGCAAATTTTACTTTTGAGGT ATTAAAGGGCACGATTAAAATCTCCAAAGAAGGGCTTTCTACAAGAAATT CCTCCAGCTGCG

Coding sequence (CDS) from alignment at scaffold_135:59135..61196+

>TCONS_00047724 ID=TCONS_00047724|Name=TCONS_00047724|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_135:59135..61196+ (Clytia hemisphaerica)
ATGGATCAAACGATCAGTGAAATTAAGCAATACAGTGATCGATTTGTTGA
ACTTCCAGATGATTTGGTAGGTGTCATGGTAACCCATATGGACATCGACA
AAGAATGGAGTAAAGAAGACATTACTGAGATTCTCGTTGACGATTATGAG
CTACCTGACATTGTTTTTTCGCATCAACAAAAAAAGGGAAATGATCTTTG
CCAAGATATCTTGAAAATTTGCGATACCAGTTACCTAATCGACGTTGGAA
GCAGTTTATTTTCACAGCTATTTAGCTTCAGAGAGAGTaatcgaaaaata
ttgaaagtgaCCAATGACTTTGTCAAACGATTCAAGTTACTGAAAGAAAG
TTTTAACAATGAAAGAACGGCCTTTGAGGGGAGAGAACAGCTGATTATTC
ATTGTGAATTTTGGGCTTTGTTTCAAAGTTATTTGATTGTAATGGCaaaa
gaagaaatgaaaaacGAATTAGATTTTGATTATAATGTAACGGAAGGTGA
TCTTCAACAAGGATATGTAGTCAACATGACCAACCAAATTGAAGCTGTCA
TGGACGACATTCGCCTTTACATTCAACGCCACCAGAGTCGGAAAGCTTCA
GTAAGATGTTGCTCTCACTGTGGAAAAACTTGGAATAACGCGGACGTCGA
AACATGTGGAATGTCAAACCAAGGAAACCTGAACAACAATGTAACTCCCT
GGGCAATGGCAAATTTTACTTTTGAGGTATTAAAGGGCACGATTAAAATC
TCCAAAGAAGGGCTTTCTACAAGAAATTCCTCCAGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030392XLOC_030392Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047724-proteinTCONS_00047724-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047724-exon-scaffold_135-1491911889:59135..59403TCONS_00047724-exon-scaffold_135-1491911889:59135..59403Clytia hemisphaericaexon
TCONS_00047724-exon-scaffold_135-1510915933:59135..59403TCONS_00047724-exon-scaffold_135-1510915933:59135..59403Clytia hemisphaericaexon
TCONS_00047724-exon-scaffold_135-1575043694:59135..59403TCONS_00047724-exon-scaffold_135-1575043694:59135..59403Clytia hemisphaericaexon
TCONS_00047724-exon-scaffold_135-1491911889:59907..61196TCONS_00047724-exon-scaffold_135-1491911889:59907..61196Clytia hemisphaericaexon
TCONS_00047724-exon-scaffold_135-1510915933:59907..61196TCONS_00047724-exon-scaffold_135-1510915933:59907..61196Clytia hemisphaericaexon
TCONS_00047724-exon-scaffold_135-1575043694:59907..61196TCONS_00047724-exon-scaffold_135-1575043694:59907..61196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_135supercontigscaffold_135:59135..61196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0602766 0.0269179 0.0652354 0.072188 0.0708796 0.028005 0.147062 0.242868 0.123308 0.0822923 0.16589 0.0563799 3.72364 2.38556 0.208835 0.26381 0.203821 0.349925 60.5846 28.5446 0.260415 0.310106 0.251362 0.506652 0.419965 1.12726 0.284986 0.192287 0.145843 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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