TCONS_00047716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047716
Unique NameTCONS_00047716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047716 ID=TCONS_00047716|Name=TCONS_00047716|organism=Clytia hemisphaerica|type=transcript|length=1903bp
ttgaagagATGGAGTATTTCAAGATGATATTGAGGCATGCTTGAAATCTT
CATTTGAtaagttattttgaaaaaaatctctaaCATATGATTGGTAGGAA
GAGACCTGCACTTTTAAATGGAGAAAATCTATGGTATACAAAAACCAGGA
TTATGAATTCATAAATTTtggtttcgaattttgaaacaTATATTCATATT
TGGTTGTGTTTGTAGATGGGTCATAACGTCTTGAGAGTTTGAGCTTTTAT
ATGGATTCActctttgaaagattttaatGGATACGAAATTGTTTGGGCCT
TTTTATTGATGTAACCGAGGAAACCATGGGCGTTTTGATTAGCAAGAAAA
AGCCTAAGCCTGCACCAAGCCAACCAGAATTGCAACCATCACAACCAAAA
CCTGAACCCGTCCCAGAGCCGGAGCAAGAACCGAGTCGAGAGCCAACTCC
TGAAGTGGTATCAGaagaagaagaagaagaagaaccaGAGGAGGAGCAAG
AAGAAGAAGAAGAAGAACAGGAAGAACCAGAGGAAGAAGAAGAGCCAGAA
GATGAGCCAGAAGATgacgaaaacgaagaagaaaaagaatcaGGCAATGA
GGAAGTAGTTGAATATTCATCAGATGTTGCATCTGAACTGTTGAAAGGTG
TTATTGACATCAATATTCCATCACAAGCACGTATTGTTCGCATCTTCACC
AGTTCCACATTCACCGATACGTTTAACGAACGAAATGCATTAATGGTGAA
GGTGTATCCAAAGTTGAAAGAATATTGTCAATCAACTGGATATGATTTTC
AAGTGGTGGACATGAGATGGGGTGTACGTGACGAAGCTACCGCTGACCAC
ATGACGTCAGAATTGTGTATGAAAGAACTGAAATTGTGTCAAGATATTTC
GACAGGGCCGAGTTTTGTTACTTTTTTGTCGCACAAATACGGTTACCGAC
CATTTCCACCGAAAATTGTCGCCACCGAATTCGAAGCAATGTTTAAAGTC
GTTGAAGAACAAAGCGACAAAGATCTCcttcaaaaatggtttctgAAAGA
CGAGAACATTATTCCAACTACATACGTCTTACAACCAATCACCGACCTTT
TACCGAATTACGGAAATCataatgtttctaaagaagaaCGCGGCAAAGCA
TCTGGAGAATGGTGGGCAGCTTTTGAGCGAATGCAAGTTGTTTTTCGGGA
AGCTGCCGATAAAGTATTCAAAGGAAAGCCAAATATTCGATGGAAATACT
TTCAATCCGTTACGGAAGACGAGATCCAACGAGGTATACTCAAATCTAAA
GATGCTAAATCACAATGTCATTGGTTCTATCGAAACATTCAAGATCTGCG
ACAAAACATTGATGACAAGGCGGCTCGCAATTTCATTGATAAGCTTGGCC
AGAATCTAGATGACGAAGCTGTCGGCTTCACCGAGGATTTGAAAGCAACC
AAAATACCTGGTGTTTTACCACAAGAGAATATTAACACCTATGATATCCA
ATGGTCTGCAGAACACGGCGTCAATCCGGAAACCTCTGATGTTCATAAGA
AATATATTGAACAACTATGTGATGATTTTTATCGTATATTGGTCGTCATG
ATTGATAATGGAATTAAAGAAAGAAAGGCTGCTGACATTGATGACGAGCT
GGTCAAAGAAATATGCCAGCATTCATCAATGTGTAAAGAAAAAAGTCGAA
TTTTCCAAGGTCGACAAGACATCATTGATCAAATCATCTCTTACATTGGT
AAAGAAGAAGAGGACGAGGAGAATCGTACAACTCTGGTAGTTTATGGTGA
ATCTGGNAAATCTGTTCCAAATTTACCATTAAATGAGGATTGTTTATTAT
ATTCAATACAAAGTTTTGAGCTCCTGATCGTTTCACGATTTTGCCTTTAT
CCC
Run BLAST on NCBI

transcript from alignment at scaffold_134:128727..136772-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047716 ID=TCONS_00047716|Name=TCONS_00047716|organism=Clytia hemisphaerica|type=transcript|length=8046bp|location=Sequence derived from alignment at scaffold_134:128727..136772- (Clytia hemisphaerica)
TTGAAGAGATGGAGTATTTCAAGATGATATTGAGGCATGCTTGAAATCTT
CATTTGATAAGTTATTTTGAAAAAAATCTCTAACATATGGTAAGCATTCA
ATTTTATTTTATGTATTGCTCATTATGTTCGTTTTTTCTTGTTAGTTTTC
GTTTTTTCTTATTTACAACATTTTTAGAGTACTATGGTCTATATTCCCTT
ATAAGAAATTACACTTTTTAGTGCCTTCAATCCAATTGCCTACAGTGTTC
TTTAAAACTTTTGGCATGTAAACTTTATTTTCTCATATTATACTTTGTTC
TTATAAATGAAAACATGCATCTTTACAGCTCTTTTTTTTACCAAAAGTTG
AAGTTGCCATGTAGGATGACAAGACCATCTTTTACCAAGCCTATTCCTTG
ATTTCAAGATCCCTCTCGATTCGCAAGTTGCTAGCGAACGTTATGAGAAA
TCTTAGATAGTTAATAAAAAAGCGAATTCTATTAGTAGTAGAAGTTTAAG
TGTCTTCTCACAACTTTTTCTAGCAACTCGCGAATGGAGAGGGACCTTGA
AATCAAGAAATATGCTTGGTAAAAGATGGTCTTGCTAGCAGCTTGCGAAT
CGAGTCTTTGATCTTGGTTTCCCATCTGATGAAGTAGTTTTTTATATATT
TTTGACTTTCAGTTTTTAACACTTTCTTAGAATTCGTTATTTAATAACTA
TCTAAGATTTCTCATTTTCCCATACTGTCCATAATAAATTTGTGTAAAAA
GAACAAACAGTGTAACATATATTTTATTTATGTCTATCTCATATTAAACA
TACATGAAACTCAAATAGTTTCCTTGGAAACCTAATAACCTTATTTCTAG
TTATTCATTATCATCTCTAACAGTAACATCTATTCCTTATCTTTTATAGA
TTGGTAGGAAGAGACCTGCACTTTTAAATGGAGAAAATCTATGGTATACA
AAAACCAGGATTATGAATTCATAAATTTTGGTTTCGAATTTTGAAACATA
TATTCATATTTGGTTGTGTTTGTAGATGGGTCATAACGTCTTGAGAGTTT
GAGCTTTTATATGGATTCACTCTTTGAAAGATTTTAATGGATACGAAATT
GTTTGGGCCTTTTTATTGATGTAACCGAGGAAACCATGGGCGTTTTGATT
AGCAAGAAAAAGCCTAAGCCTGCACCAAGGTAATTTTTCCCATCGACATA
TATCGTCGACATATATGACGTTCAAACAACGTCAATCTAACGTTCATTAC
ATCCAAATGACGTTAAAAACATTGAAACGACATTGTGTGCCAGCTGAGTT
TTTTGACACTTTGTCTTGTTTTGTGTTTTTTTTGTATTTTGAAAGTCTAT
TTTCCATACTTGAAAAGACTTTCTGTTAGCAGGTATTTGCGACGAACTTA
TTGTTTTCAGTGGATACCCAGCTTAGAGTTGCTATCCTACTTTTATACTA
AGTTAAATAGATGTATTTTATTATCTTTTTGGCTCAGCCAACCAGAATTG
CAACCATCACAACCAAAACCTGAACCCGTCCCAGAGCCGGAGCAAGAACC
GAGTCGAGAGCCAACTCCTGAAGTGGTATCAGGTAGTACTTCATATTCGG
TTTCTTAGTGTAGTGAAATAAAAAGATTCACAAAGTACTCAAGAAAATTC
GAGTTTTATTAGGTAAAATTGATAGGGATCGACCATTTTCATAATCTCTC
AATCCAACGCCTGTCAGGACCCCTCTCCTTCGATACCCATCATCACGTGA
AAATCTGGTTCATCACGCAAAAAAAAATCCTCATTGCCTTTTTAATATCT
GTTCATTATACAAAAAAAGCAAATTAAAATCACGTCATCGTTAATACCGT
TCGGAGGGCTTTTCATACTTTCACTACCAAGAAATATTAAAGATTCTAAA
AAGTTGCAAAATTCAATTATTCTTGTCAATATTCCCATAGCATCTTAACT
TTTCTCTCTTTCATTTTTTAGAAGAAGAAGAAGAAGAAGAACCAGAGGAG
GAGCAAGAAGAAGAAGGTAAAACATTGCAATTATTGTATCTTAAGTTGTC
TTTGTAATTGTTGTCTTAAAAATGAAACTTGAATTAAATATTAAACTAAT
TAAATTAAAATTAAAAACTAATTGAAAGTCCTATTAAAAATGGTAAAAAT
ACTCTTACACCAAAATCTTTTCAAGATAATTAAAGAAAGGTTTATTCTCA
ACTTCAGTTGAGCTATAATCTGAGAATGTCTGTATGTCTGTATGTCCGTC
CGAAAACTTTAGGGCAGGCTGGACACTTCAAAAAAGGTCGGATTTGGCTG
AAATTTGGCACACTTGTTCCTTGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATA
TTTGCTACCTAATACTAAATATTTGAAATGTTACAATTGGGCCTTCTAAT
AACGGGAAAATCTGAAGTTGAGCCCAGTGCGGTGCGCACGTTCGACTATG
ATTATTAACCTTGATAGAATATTTGTTATTTTAACTTTATTTGAGTTAGA
ATCTGAGAATATAATCTATTTGTTTATCTATGTATCCGGTGACGTATCCT
TTCAAAATAATGGGTAGACTTGTGGCTTGATTTAACTTGCCAGAAATTTC
GCAGACTTTTCCCTTTAACTTATGTAGCCTAAGACAAGTTTCAACACCTA
AATGAGTCTGGAACTCAAAACCTTAATTATCAATTTTAGAATTGGGCCTA
AGTAAGGATGACGTAACAATATACTAAAGCTCGGTTAGCACGTTCAGTTA
AAATAAAATATGATAGAAGAAAAACAGCATACCTTGGAGCTACGACCAGA
AAATCTTCCCCACATACAGGGTCACCTTCATGGATCTTCCGGGGAGAATG
TGCGACGTTTCGGGGGGTACCTCTTGACGCTTTGTCTGCACACCGAACCC
TCTCAGAGACGTGAGGTCCCAATACACTAGGACATGCTTGCTGATTCTTT
CGATTAAGCTCCATCTAGCCAAATGACACCATCTCTCTTTATCAAATAAT
TATATATCAATTTTTTAGAAGAAGAACAGGAAGAACCAGAGGAAGAAGAA
GAGCCAGAAGATGAGCCAGAAGATGACGAAAACGAAGAAGAAAAAGAATC
AGGCAATGAGGAAGTAGTTGAATATTCATCAGATGTTGCATCTGAACTGT
TGAAAGGTGTTATTGACATCAATATTCCATCACAAGCACGTATTGTTCGC
ATCTTCACCAGTTCCACATTCACCGGTATGTTTTAAATGCTCTTCATATC
AACTACACGTTTTTTTATAAGAACATCCAAAACTTTTGAAGCCTTCGGAT
GCTCTTAACTTTTTGATCTTCAAGCCTTAGTATATAACATGCTTTCAATT
TCACCATTTTGTGAGTGTTTTTGTCACTTTTCCTAAGAAATCGGGTGGTT
TAGAGTCCACAAAGCCTTAAAATGTTCTTAACTTTTTGATCTTCAAGCCT
TAGTATATAACATGCTTTCAATTTCACCATTTTGTGAGTGTTTTTGTCAC
TTTTCCTAAGAAATCGGGTGGTTTAGAGTCCACAAAGCCTTAAAATGTTC
TTAACTTTTTGGCCATCGAAGCCTTATGTTCTCTTATAATTTGTTCTTAT
AAAAAAAACGTGTTTGTTCAGACGTTATGGTTTAGCATCGTTTCTGTAGG
CTCTCTACGGAGAGGAAGTGTTCATATTGGTTTCGGAGCAGTTCCGTTCC
GATAAAAATAGTGGATGGTAGCTGTTTTGATCCGTTTTGCTTTGCAACAT
ATTTTTTAGGTTTATAATAAATTTTGGTGTCCACACAGTGTCTGTGTCGG
AACCGTTTCGTTGCGAACCGTAATGTCTTAAAATGAAAAGTCTTGAATGC
ACATCAGCCTCAAGGGGCTGACAGGCTTGCTATAGAGTAAGATAGACTTG
CTAGTGTAATGTTGATTTACTTGTTGAGACTGTTCTTTGATTTTTGACAT
TTCAACGAGCGAGTTTAGTTTGGATTATAGGAATTGAATAAGTCTTCATT
GAAAAGCTGGAACTATACTTTCTTCAAACTGTACTTCATCAAAAGATCAG
GGATACGGAAAAAAATATAATTTTTTACAAGCTTTCTATATTGGGAGGGG
GAAGGTTATGGTCATGGTAATTGTCAATGGTTCTCATGGTATCTTGAAGC
ACATCTTATTAAATTGTTTGATTTCATCCCAGATACGTTTAACGAACGAA
ATGCATTAATGGTGAAGGTGTATCCAAAGTTGAAAGAATATTGTCAATCA
ACTGGATATGATTTTCAAGTGGTGGACATGAGATGGGGTGTACGTGACGA
AGCTACCGCTGACCACATGACGTCAGAATTGTGTATGAAAGAACTGAAAT
TGTGTCAAGATATTTCGACAGGGCCGAGTTTTGTTGTAAGTAAATTCCTT
CCAAACCTTCAAAAAGTAGTCTAGCATGCAACTAAATTCAAGTGAGAGTA
TGACAAGTATGGCAAACAAAAATCAAGGACATAACAGTTTATGGAAACTA
ACATTATCACTTAACGCATTATCATATAACATTGGAGTATGAATTTCAGA
TTGTGAAAATATCATTCTTATCAAAGTTGCATCACATCAGAATTTTAAAA
TTTAAAAAAAGTTTCAAATAATACCACATATAACTAAAAGTTAAGATATT
TAATTAAAAACTTTTCTTTCTTAGACTTTTTTGTCGCACAAATACGGTTA
CCGACCATTTCCACCGAAAATTGTCGCCACCGAATTCGAAGCAATGTTTA
AAGTCGTTGAAGAACAAAGCGACAAAGATCTCCTTCAAAAATGGTTTCTG
AAAGACGAGAACATTATTCCAACTACATACGTCTTACAACCAATCACCGA
CCTTTTACCGAATTACGGAAATCATAATGTTTCTAAAGAAGAACGCGGCA
AAGCATCTGGAGAATGGTGGGCAGCTTTTGAGCGAATGCAAGTTGTTTTT
CGGGAAGCTGCCGATAAAGTATTCAAAGGAAAGCCAAATATTCGATGGAA
ATACTTTCAATCCGGTAAAAAATTCATATAGCTTTTAGAAAGGGTCTAGG
GAAGTTAATTCTTTATTACATATAGCACAGCATTAATTCAAACATGGTTT
CTTAAACTTTCCAGAACGGTTAAGTCTTTATCTTTTTTCAAAAAGGACGT
CATTAACAAAATACGCAAAACACTATACAAAAGAGCGACGGACAACTTCA
AATGGCACTTGGGCTCACAATGTATATTATAAATTTGTTGCGACGCTACA
GTGATGTAATGATTCACAGTCCCGTAGCAACTAGGGGTGGGGCGTGGGCA
TTGCACCCCCAATAATCTTTTCAAAGATGGTTTCTTCAAATTTTTCAAAC
TAGTTTTCCTTACTTACTTGTTGCTAATAATTATAAATCTTTTGCTTGAA
TTCATTGATTTTTCGAGGCCTTTTTTAAAATTCGAAAACCAGGGTTGGCT
CTTGCGGTGTCACTCAACTTCAACCCCTTCTCCCAATATTAAAATTACTT
TTAACTTTAAAGCTGGATTCATGTAATCTTGTTTTATTTAGTTACGGAAG
ACGAGATCCAACGAGGTATACTCAAATCTAAAGATGCTAAATCACAATGT
CATTGGTTCTATCGAAACATTCAAGATCTGCGACAAAACATTGATGACAA
GGCGGCTCGCAATTTCATTGATAAGCTTGGCCAGAATCTAGATGACGAAG
CTGTCGGCTTCACCGAGGATTTGAAAGCAACCAAAATACCTGGTGTTTTA
CCACAAGAGAATATTAACACCTATGATATCCAATGGTCTGCAGAACACGG
CGTCAATCCGGAAACCTCTGATGTTCATAAGAAATATATTGAACAACTAT
GTGATGATTTTTATCGTATATTGGTCGTCATGATTGATAATGGAATTAAA
GAAAGGTTGGTACCCATTTGAGAGGGCCTTAAATCTGTTCCAAATTTACC
ATTAAATGAGGATTGTTTATTATATTCAATACAAAGTTTTGAGCTCCTGA
TAGTTTCACGCTTCTGCCTTTATCCCACCTGAACTTTATATAGACTCTGG
AGGTAGTTTCTGAATCCCGGCCAAACAAAATCTTTTGATCGAAGTTTTTT
GGTACCCTAATGGTTGCACTACCACTAATCAATAGCGGTGTAAAAATGCA
TGGGGATCGCTGAATCTACTTTTTTTGGCTTCTTTGCGGGTAATACTAAA
GAAATCCGGTTTATAAAGGTCAGTGCTTTATTCTCATCTTTGGAATGTTA
TAACACAATCGTGACTGCATCTTCCTATCTAATTGTAGAAGGCAGTATCT
TACTCACAAACTTGGATTTTTTCCCTTTACTATCGCTCTAAACCTTTCAT
GTAGATGTCAAGTACTGCTAATAATCAGGTACCCGAGACTAAGTATGACT
GGAGGTGACCACACTTTCACCGCGGCTTCTTGACGTTTTGATGTTTGTCA
AATATTAATCATTATAATTATGTTTGAGTCAAATATATTCCAAAAAATTC
AATAGGCTGCTAACGAATAATTTCCGTGGAAAGGGCAAATATGAAGCAAG
GAACTTATCAAAGCTATCAAAGTTCCATTCAAATATGAACAGAAAGAGAA
CAGTACAAAAGAAACAAAAAAAATTCAGATTGCAGAAAAACAAACTATCC
TACTTTCCATCCTTAGAAAGGCTGCTGACATTGATGACGAGCTGGTCAAA
GAAATATGCCAGCATTCATCAATGTGTAAAGAAAAAAGTCGAATTTTCCA
AGGTCGACAAGACATCATTGATCAAATCATCTCTTACATTGGTAAAGAAG
AAGAGGACGAGGAGAATCGTACAACTCTGGTAGTTTATGGTGAATCTGGN
AAATCTGTTCCAAATTTACCATTAAATGAGGATTGTTTATTATATTCAAT
ACAAAGTTTTGAGCTCCTGATCGTTTCACGATTTTGCCTTTATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030386XLOC_030386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047716-exon-scaffold_134-1575043694:136684..136772TCONS_00047716-exon-scaffold_134-1575043694:136684..136772Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:135594..135873TCONS_00047716-exon-scaffold_134-1575043694:135594..135873Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:135191..135285TCONS_00047716-exon-scaffold_134-1575043694:135191..135285Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:134757..134801TCONS_00047716-exon-scaffold_134-1575043694:134757..134801Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:132448..132654TCONS_00047716-exon-scaffold_134-1575043694:132448..132654Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:131288..131490TCONS_00047716-exon-scaffold_134-1575043694:131288..131490Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:130659..130998TCONS_00047716-exon-scaffold_134-1575043694:130659..130998Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:129768..130131TCONS_00047716-exon-scaffold_134-1575043694:129768..130131Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1575043694:128727..129006TCONS_00047716-exon-scaffold_134-1575043694:128727..129006Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:136684..136772TCONS_00047716-exon-scaffold_134-1510915933:136684..136772Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:135594..135873TCONS_00047716-exon-scaffold_134-1510915933:135594..135873Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:135191..135285TCONS_00047716-exon-scaffold_134-1510915933:135191..135285Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:134757..134801TCONS_00047716-exon-scaffold_134-1510915933:134757..134801Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:132448..132654TCONS_00047716-exon-scaffold_134-1510915933:132448..132654Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:131288..131490TCONS_00047716-exon-scaffold_134-1510915933:131288..131490Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:130659..130998TCONS_00047716-exon-scaffold_134-1510915933:130659..130998Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:129768..130131TCONS_00047716-exon-scaffold_134-1510915933:129768..130131Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1510915933:128727..129006TCONS_00047716-exon-scaffold_134-1510915933:128727..129006Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:136684..136772TCONS_00047716-exon-scaffold_134-1491911889:136684..136772Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:135594..135873TCONS_00047716-exon-scaffold_134-1491911889:135594..135873Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:135191..135285TCONS_00047716-exon-scaffold_134-1491911889:135191..135285Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:134757..134801TCONS_00047716-exon-scaffold_134-1491911889:134757..134801Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:132448..132654TCONS_00047716-exon-scaffold_134-1491911889:132448..132654Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:131288..131490TCONS_00047716-exon-scaffold_134-1491911889:131288..131490Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:130659..130998TCONS_00047716-exon-scaffold_134-1491911889:130659..130998Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:129768..130131TCONS_00047716-exon-scaffold_134-1491911889:129768..130131Clytia hemisphaericaexon
TCONS_00047716-exon-scaffold_134-1491911889:128727..129006TCONS_00047716-exon-scaffold_134-1491911889:128727..129006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_134supercontigscaffold_134:128727..136772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.24753	0	0.000116961	0	0.383817	0	0	0	0	0	0	0	0	0	0.0636672	0.0730744	0	0.166203	0	0	0	0	0	0.214441	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00047716 vs. Swiss-Prot (Human)
Match: NWD2 (NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens GN=NWD2 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.525e-35
Identity = 111/398 (27.89%), Postives = 194/398 (48.74%), Query Frame = 2 
Query:  665 IPSQARIVRIFTSSTFTDTFNERNALMVKVYPKLKEYCQST-GYDFQVVDMRWGVRDEATADHMTSELCMKELKLCQDISTGPSFVTFLSHKYGYRPFPPKIVATEFEAMF-KVVEEQSDKDLLQKWFLKDENIIPTTYVLQPITDLLPNYGNHNVSKEERGKASGEWWAAF-ERMQVVFREAADKVFKGKPNIRW----KYFQSVTEDEIQRGILKSKDA-KSQCHWFYRNIQDLRQNIDDKAARNFIDKLGQN----LDDEAVGFTEDLKATKIPGVLPQENINTYDIQWSAEHGVNPETSDVHKKYIEQLCDDFYRILVVMIDNGIKERKAADIDDELVKEICQHSSMCKEKSRIFQGRQDIIDQIISYIGKEEEDEENRTTLVVYGE--SGKSV 1816
            +P+  R VR+F S+   DT  ER AL   VYPKL+E+C+   G +FQV+D+ WGV ++        +  MK L+ C   S GP FV  L  KYG    P ++ A+EFE +    +E + +  LL++W+ +DEN +P  Y L+P +++L +  N N  +      + + W    + ++ +F+ AA K+   K  ++     +Y  S  EDE    + K   A   +C  + R I ++ + +       ++D  G       D EA      L+   IP ++   N+  Y      +  +   + ++   YIE L   FY  ++ +I   I++    + D  L  EI QHSS+CK  +  ++ + + ++ + +YI   +    N   L++YG   +GK++
Sbjct:   35 VPA-GRSVRVFISANPEDTGAERQALRENVYPKLREFCRENYGLEFQVIDLYWGVEEDEWDSPELQKTRMKLLENCLKTSAGPCFVGLLGEKYGNIRIPGEVEASEFEMILDAAIEAKLETKLLEEWYCRDENSVPAAYYLRPKSEMLRS--NRNAMQPSTNAENEKTWQEISDEIKKIFK-AAVKLLHEKGKMKHSQAKRYLFSAIEDEFDFALGKQTPAFLKKCVCYIRKIANIERFVKIPEMGKYMDITGTEPRIIRDPEAQEKLIKLRDEFIPTIVASSNLRVYTSVTHCDMKLG-YSQEIENHYIEGLGKQFYEDMIDIIQATIQQNFDTETDT-LYDEILQHSSLCKTYASFYEYKCESLNIVHNYILPSKAGHIN--PLIIYGGPCTGKTL 424
The following BLAST results are available for this feature:
BLAST of TCONS_00047716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NWD22.525e-3527.89NACHT and WD repeat domain-containing protein 2 OS... [more]
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