|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047559 ID=TCONS_00047559|Name=TCONS_00047559|organism=Clytia hemisphaerica|type=transcript|length=1150bp
CCAGAATTGATGattgaatcaattgaacacTGTATTTTGGTATACTAGGT
GTGCTCGATTCATCAACTTTTAAATAATCAAGCTTGTTCATGGGAAAGAG
GAAAGGTTCTCAATTTTAATGTTACAACAAAATGAAAANCTTGCTCATGG
GAAAGAGGAAAGGTTCTCAATTTTAATGTtacaacaaaatgaaaaagaaa
attatttctgCAAAAATGAAACCTATAAAATCTTGATAGGTTTAGTGTAG
TTGATTTCACAAAACATAAACTTattgtttaaaagtttaaaacaaTATCT
AAGTGTCTTAAAAATTTCATTGTAATGAAGAAAGGAATAACATTACTTTT
GAATTTGAGGGGCTATAAACTGAAATCAATTTCATTTCTCCCCCACTTTC
AATGTCTTGATATATTAGTCCTGTCCTGATTTATTTTAATTGTTTAGATT
GTTGATTGTATTTAAAAAGCTTGTTTTATATATCTGAATTATCATTAGAA
TCTTTTCGTTCGGCTGGTTTTAAAAACACCTTTTCTTTGGTCACAATGTC
ATTTTCAtgttaatgataaaaaattccagcatcaaaacaatgacgagAAA
AAACTTAGAACACAACTGTGCTACCTATTCGGCCATTCCTGAGGACACGG
CTATTCACTATTCAGTGCAACCTATTTGCATGAAGCTCTCCTTACATTAG
GACAAAAAATGTCTTCTTTCCAAATGAGGATTTTTATAGACATTCTAATG
gggtttctttttttcagatgaaaaaGAGAACTTCCCTGAATGACAAAATA
AACATCATACCACAAAAGCACTTTTCTATTTCTCAAAACATTGTTTGACA
GACTCCCTGTATCACCTGTATGTCACCAAAAGAAAGTCTATCTAATTCAA
AATACAAATGAAAATTTGCATCAAAAATTATTCCATGGCCAGAATAAAAG
ACATAATGTTCTTTTGTAGTTTCCAAGGTattctcatttttaaagaaCAA
GTTTTCAGCCAGAGAAAACCTCCTTTCTTAACATAAATTTGCATCAGCTG
TCATTTgtcattaatttttcatctgCCATTTTAAAATCCATGGCTGCATC
GCATGGAAATCATAACATTTGAATTCTGTAAGACACTCAAAATACTATTT Run BLAST on NCBI transcript from alignment at scaffold_131:102685..103834 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047559 ID=TCONS_00047559|Name=TCONS_00047559|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at scaffold_131:102685..103834 (Clytia hemisphaerica)
AAATAGTATTTTGAGTGTCTTACAGAATTCAAATGTTATGATTTCCATGC
GATGCAGCCATGGATTTTAAAATGGcagatgaaaaattaatgacAAATGA
CAGCTGATGCAAATTTATGTTAAGAAAGGAGGTTTTCTCTGGCTGAAAAC
TTGttctttaaaaatgagaatACCTTGGAAACTACAAAAGAACATTATGT
CTTTTATTCTGGCCATGGAATAATTTTTGATGCAAATTTTCATTTGTATT
TTGAATTAGATAGACTTTCTTTTGGTGACATACAGGTGATACAGGGAGTC
TGTCAAACAATGTTTTGAGAAATAGAAAAGTGCTTTTGTGGTATGATGTT
TATTTTGTCATTCAGGGAAGTTCTCtttttcatctgaaaaaaagaaaccc
CATTAGAATGTCTATAAAAATCCTCATTTGGAAAGAAGACATTTTTTGTC
CTAATGTAAGGAGAGCTTCATGCAAATAGGTTGCACTGAATAGTGAATAG
CCGTGTCCTCAGGAATGGCCGAATAGGTAGCACAGTTGTGTTCTAAGTTT
TTTctcgtcattgttttgatgctggaattttttatcattaacaTGAAAAT
GACATTGTGACCAAAGAAAAGGTGTTTTTAAAACCAGCCGAACGAAAAGA
TTCTAATGATAATTCAGATATATAAAACAAGCTTTTTAAATACAATCAAC
AATCTAAACAATTAAAATAAATCAGGACAGGACTAATATATCAAGACATT
GAAAGTGGGGGAGAAATGAAATTGATTTCAGTTTATAGCCCCTCAAATTC
AAAAGTAATGTTATTCCTTTCTTCATTACAATGAAATTTTTAAGACACTT
AGATAttgttttaaacttttaaacaatAAGTTTATGTTTTGTGAAATCAA
CTACACTAAACCTATCAAGATTTTATAGGTTTCATTTTTGcagaaataat
tttctttttcattttgttgtaACATTAAAATTGAGAACCTTTCCTCTTTC
CCATGAGCAAGNTTTTCATTTTGTTGTAACATTAAAATTGAGAACCTTTC
CTCTTTCCCATGAACAAGCTTGATTATTTAAAAGTTGATGAATCGAGCAC
ACCTAGTATACCAAAATACAgtgttcaattgattcaatCATCAATTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047559-exon-scaffold_131-1491911889:102685..103834 | TCONS_00047559-exon-scaffold_131-1491911889:102685..103834 | Clytia hemisphaerica | exon |
| TCONS_00047559-exon-scaffold_131-1510915933:102685..103834 | TCONS_00047559-exon-scaffold_131-1510915933:102685..103834 | Clytia hemisphaerica | exon |
| TCONS_00047559-exon-scaffold_131-1575043694:102685..103834 | TCONS_00047559-exon-scaffold_131-1575043694:102685..103834 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_131 | supercontig | scaffold_131:102685..103834 . |
Blast
The following BLAST results are available for this feature:
|
