TCONS_00047423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047423
Unique NameTCONS_00047423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047423 ID=TCONS_00047423|Name=TCONS_00047423|organism=Clytia hemisphaerica|type=transcript|length=375bp
actatgaataatttgaagctaatgaagttgagcccagtgtgTTGCGCATG
TTCAACTATCAAAATAGACATTTTCGGATGTTAATGATGTCTTCTTAATC
acttatttttaataatttagatTATATATAAATTACCATAAAATGCAAGA
GCAAACGACTGATACCGAAGATATTGGGCTTCCCCTTGACGAGGAATCAA
ATTTTGCATTGAGGGGTCTCATTGCATTTGACAGTCAAGActtcaaagaa
attgaaaagcAAGATGGATCAAGTATGACACAAAAACTATATCTTTCAAc
aaTCTTTGAAGATCAATTTTCAGCAGGGATGTTCTCCAAAGAGaTCTCCA
TTCCATTGTCTCCCCCAACCACACC
Run BLAST on NCBI

transcript from alignment at scaffold_128:15834..19153+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047423 ID=TCONS_00047423|Name=TCONS_00047423|organism=Clytia hemisphaerica|type=transcript|length=3320bp|location=Sequence derived from alignment at scaffold_128:15834..19153+ (Clytia hemisphaerica)
actatgaataatttgaagctaatgaagttgagcccagtgtgTTGCGCATG
TTCAACTATCAAAATAGACATTTTCGGATGTTAATGATGTCTTCTTAATC
acttatttttaataatttagatTATATATAAATTACCATAAAATGCAAGA
GCAAACGACTGATACCGAAGATATTGGGCTTCCCCTTGACGAGGAATCAA
ATTTTGCATTGAGGGGTCTCATTGCATTTGACAGTCAAGAGTAAGACttt
ctttgtttgcatttttaaTGATCCCTTCTCTGATGTAGGTTTTTGATTTA
GTGAACAGATGATTTTTTGGTCCCAGGAATGCCACTTGCATTACATCAAA
GTTGAAATTTAAGTTTCAATAACCTGAAAGTTATGATTAATAATTAGAAA
TTATTGTTgagattattattttttatttcagcttcaaagaaattgaaaag
cAAGATGGATCAAGTATGACACAAAAACTATATCTTTCAAcaagtttttt
attattttaggcAAAAAGCGAAATTTATTCCTAAAGTTGTGTCGATCTTC
AATCATGGCTCTTGTCACACTGTCTTATACTTCTTTCACTGTGTTTTATA
CATTTAACGTATACCTTTTCTACCTTCAGTCTTTGAAGATCAATTTTCAG
CAGGGATGTTCTCCAAAGAGGTAAGATATTTTAACTTTGTTTACTTTAAC
AATTCTGTAcataaagattttgtttataggggcccccagtggtttgcgtg
aatgtgtgaatgaGCTTTTTTCGtttcgtgaatacgtgaatggGTGAATC
AAGGGTTCCCTTGGGGGGGCTCTTTATATTCTCTTAGTCACCGTTTAAAT
CATGTCACCCAGCTCGAAAACCAACGCTATTTCCTTATTACTGTAGATGA
TGTGTaatatttaaaactttaaagACTACTCAGATAAGGAAAATTATGTG
CTGTAATTTGAATTAAGTTAGAAGTTTGTTTTGAGCTTTATAATGACCAT
AAGTTCAAATATAATTATgctattttttggacctaccccggtggaggtcc
tataaattaacctttgtccgttcgtctgttcgttcgttcgttcgtttgtt
attagctttcctcatgattggctcgttaggttttttttatttttttctca
aaaatgcataactataaaccctcgaatgtgacggagcccgattttcaaaa
aaaaattttttagggcaaatttgggccaaaaaacggctaaaaaacggttt
ttttggactttgtgaaaaattaggtcgttaattttttctgattttttgca
caaagatgcataactataaaccctcgaatgtgacggagcccgattttcaa
aaaaaaattttttagggcaaatttgggccaaaaaacggctaaaaaacggt
ttttttggactttgtgaaaaattaggtcgttaattttttctgattttttg
catgaaagtagggtaccatcgtaggtaaaagatggcttNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNcaagagcatgaaattttggtttctaaacgtgtttttt
tataagaaacaaacgactaattttaatagatcgtcactatttgtgttctg
aatgattgtttattAATGGTCACGcctatgtagatatcaattatatatgt
gttaaatgcataaccaggtaggtccataaaagtatcacttgtttttgcTT
GTTCTAGAGAATCAAAagtgctatatttgaatgtatttttgggggaaaaa
ttcgcgatttttagcggttaaatttgcgattgcaaaaattgagcttattt
tctacttatgctataacgttcatttttacaccagtggtagttcaacctta
ggttaagaagtttgacaaatttcaaggcaaacagaaaagtcattcggaag
atatgggacccgaaataccccttggtagcacttttctgtgaaatatcaaa
tctccgacttattactaaaaacgggggtagtgatatgattgatagaACAG
TTTtacgatcataacacattttacgatctctttaatgacctcatagccaa
actgtgtttagtgttttgggaattagcaaagttctttaatgacttaaaaa
taacaaaggcaattgAAGTTCAtgcttattttttcaataaaaacaatttt
actgtgatttcacttcgtttcgaaataatcaatgataccaataataccaa
tgcaccaacacttaaccttttccaacttttaattgcacctttcaaaaatg
ataacccccgtttttagtaataagttggagatttgatatttcacagaaaa
gtgttaccaaggggtatttcgggtcccatatcttccgaatgatttttctg
ttcgccttgaaatttaacaaacttcttgacctaaggttgaactaccactg
gtgtaaaaatgaaagttatagcattagtagaaaaaaagctaaatttttgc
aatcgcaaatttaacgctaaaaatcgcgaatttttcaaccaaaaatacat
tcaaatatagcgcttttgattctctaaaacaagcaaaaaaaaaattccat
aattatatttgactatcaaaagttacaggcattcttgtttccactgtcaa
ttatatctggacagactttaatttctttttgactttagaTCTCCATTCCA
TTGTCTCCCCCAACCACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030207XLOC_030207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047423-exon-scaffold_128-1491911889:15834..16073TCONS_00047423-exon-scaffold_128-1491911889:15834..16073Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1510915933:15834..16073TCONS_00047423-exon-scaffold_128-1510915933:15834..16073Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1575043694:15834..16073TCONS_00047423-exon-scaffold_128-1575043694:15834..16073Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1491911889:16265..16326TCONS_00047423-exon-scaffold_128-1491911889:16265..16326Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1510915933:16265..16326TCONS_00047423-exon-scaffold_128-1510915933:16265..16326Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1575043694:16265..16326TCONS_00047423-exon-scaffold_128-1575043694:16265..16326Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1491911889:16463..16503TCONS_00047423-exon-scaffold_128-1491911889:16463..16503Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1510915933:16463..16503TCONS_00047423-exon-scaffold_128-1510915933:16463..16503Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1575043694:16463..16503TCONS_00047423-exon-scaffold_128-1575043694:16463..16503Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1491911889:19122..19153TCONS_00047423-exon-scaffold_128-1491911889:19122..19153Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1510915933:19122..19153TCONS_00047423-exon-scaffold_128-1510915933:19122..19153Clytia hemisphaericaexon
TCONS_00047423-exon-scaffold_128-1575043694:19122..19153TCONS_00047423-exon-scaffold_128-1575043694:19122..19153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:15834..19153 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385789	1.04206	2.66185	2.6042	9.07442	7.93494	9.38123	5.94133	13.0756	9.42472	8.43264	9.88888	10.5824	6.96552	8.75964	11.5639	9.33126	10.3154	0	6.47147	5.12922	7.97521	3.92078	3.69828	2.87093	1.65669	6.44112	2.20442	3.76851	5.46922
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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