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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047307 ID=TCONS_00047307|Name=TCONS_00047307|organism=Clytia hemisphaerica|type=transcript|length=529bp
ATTCACTCGTTTTGATTGCAACTTATGCACTTTCAAACAGTTATCCTGAT
ATCTCAATgtatttgcaaatttttgcataCATGGCTTTGGGATTCTGGCT
TTTCTGCAGCAATGTTTTGATTATGGTTGATAGATTCATGGAAGTTTATC
TTAATATCAGgtACAGTGTTTACTGGTCAGAGAAGCGCTCAAAGATTGTT
GTCTACATCAGTACGCTAATCGCATTTTCTTTGGGATGCATTTTCGCTTA
TTTCAATACAGAACTTAGCGAAGTTATTTTCTACATATGGATTGTATTAG
ATCATTTACATGTCGTAGTTGCGATGATTGCTTACGGGTATCTATTTACA
AAGTTACGCGACAATAGACGTAGAACAGCTCGCGTAAGCGCTGTCATAAC
AACTAACAACAACAATCTTGACGTCCCAGGAGAGCAGGAACGACACATCa
agttgaaaaaatatatgaagAGATTGAAAAAAGCGTTTTATTTACCAACG
CTCTTCGTACTCAATTTCCTACTTTTCAC Run BLAST on NCBI transcript from alignment at scaffold_125:30891..32571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047307 ID=TCONS_00047307|Name=TCONS_00047307|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at scaffold_125:30891..32571+ (Clytia hemisphaerica)
ATTCACTCGTTTTGATTGCAACTTATGCACTTTCAAACAGTTATCCTGAT
ATCTCAATGTGAGTATTGTACCTTATCGCTAGAACATTCGTCCAAAAAAT
ATTCCCTTTTTACTCTTTTCCCTTTGGTttgttttaacaaaaatataGCG
CTTAAGCATCTAAttttaagaaaacaaaaatattcaaataacaAAAACTC
ATTTCGTAAAAGAATATTCGCCGGCAAAAATTACTTGTAGTTTAAAAATA
ATCGTCGACAACAAGAATAGTCGGCTATATAAAAACTCGTCAGTAAATAA
TTTCGCCAATAAGTGATTGTTTCGTCACTTAtaaccgacaaattttctta
ATATTTATAGACATCATTTAGGTAACAAAAACAGGCTATATCTGTATTCA
CAAGACACACTATGAAACCCCATTCGGggtgggggtacttaggcaaaagt
AAGTACTATTGAAATGTCTGTCGTAAGGTTTGGGTGTTCCAGCatcaaaa
gtctctctaagagttACCAAAACTAACAaacagtctctctaagggtaaga
gTTTGGAAAATACTCGATGCATTATATTTTCCAACCATTTTCTAggtatt
tgcaaatttttgcataCATGGCTTTGGGATTCTGGCTTTTCTGCAGCAAT
GTTTTGATTATGGTTGATAGATTCATGGAAGTTTATCTTAATATCAGGTA
TGGAAAACAATCTCGTCACTTATTTGGTAAAAATCTCATGAAGTTTTAAT
GAATTAGTTCATTCATGAGatgctcaatttttttgttttctgacGTCATC
ACAAATAGCCTGAAAACAGATTTTTTAGCCaaaagaaataatcaaattta
agtaacattgattttattttctaCATTGAAATACACTTCTTTCGGTGTAT
GACTGATCATACTTCAAGTGGTGATAATGGGTTCgaaaaattactgaaaa
tttgGCGTTAGTTTACCTGAGTTTATTTATTTCCTTTTGATATAAGCAAT
GCAATGCTTCTCCACATAGCACCATCTCACCCCGTGTCATTTATATGGAC
CTCCCCACCTTTGTTATGGTATGAAGCTATAAAACAATGCTTCTCTGAAT
AGTACTATCTTGTCAAATGTCATTTATTTGGACCTCCCCTCTTTGTTATT
GGTATGAAACTATGAGACAATGCTTCTCTGAATAGTACTATCTCGCCCGT
GTCATTTATTTCGAACTCACTCTCTTTGTTTAGATTCTTAAGCCAAATGT
TTACTGCTCAAAGTTAATTTTCCCCAAAATattgtttgtttctttttttt
tgctttttttaggtACAGTGTTTACTGGTCAGAGAAGCGCTCAAAGATTG
TTGTCTACATCAGTACGCTAATCGCATTTTCTTTGGGATGCATTTTCGCT
TATTTCAATACAGAACTTAGCGAAGTTATTTTCTACATATGGATTGTATT
AGATCATTTACATGTCGTAGTTGCGATGATTGCTTACGGGTATCTATTTA
CAAAGTTACGCGACAATAGACGTAGAACAGCTCGCGTAAGCGCTGTCATA
ACAACTAACAACAACAATCTTGACGTCCCAGGAGAGCAGGAACGACACAT
CaagttgaaaaaatatatgaagAGATTGAAAAAAGCGTTTTATTTACCAA
CGCTCTTCGTACTCAATTTCCTACTTTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047307-exon-scaffold_125-1491911889:30891..30948 | TCONS_00047307-exon-scaffold_125-1491911889:30891..30948 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1510915933:30891..30948 | TCONS_00047307-exon-scaffold_125-1510915933:30891..30948 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1575043694:30891..30948 | TCONS_00047307-exon-scaffold_125-1575043694:30891..30948 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1491911889:31486..31587 | TCONS_00047307-exon-scaffold_125-1491911889:31486..31587 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1510915933:31486..31587 | TCONS_00047307-exon-scaffold_125-1510915933:31486..31587 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1575043694:31486..31587 | TCONS_00047307-exon-scaffold_125-1575043694:31486..31587 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1491911889:32203..32571 | TCONS_00047307-exon-scaffold_125-1491911889:32203..32571 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1510915933:32203..32571 | TCONS_00047307-exon-scaffold_125-1510915933:32203..32571 | Clytia hemisphaerica | exon |
| TCONS_00047307-exon-scaffold_125-1575043694:32203..32571 | TCONS_00047307-exon-scaffold_125-1575043694:32203..32571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:30891..32571 + |
Blast
The following BLAST results are available for this feature:
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