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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047124 ID=TCONS_00047124|Name=TCONS_00047124|organism=Clytia hemisphaerica|type=transcript|length=1024bp
TAAAAATCATGATGTgaagattgaaaaagaatgtgaATGAGAAGAAGAGC
AACAAGAAGTAATGTTTTATAGCAAATCATCATTACTTCTtattgtattt
ctatgttttgttTATGTGGAAAGTCAAACATACCATAAAGGGGAAGTGTG
CGGTGCTGGCCATTCATGCCCTTTAGATTGTGTCACCTACCCTGGTCAAT
TTTACTGTGTTTGCCGTCAAGCTCATATTGCCCCGGGTCCAGGCTTAACA
TGGAAAGAGAATTTCACAGATTGTACCAATGATTACAGTCCGTATGGTAT
TCATCCTTATGAGTCAGGAGCAGTTGTTGGATTTCCATTTTTCGATTATG
AGAGGCTTCCCAATGAAATGTTTACCAGTAATAACTAGGTTCCCAAGGAA
GAGCTGGCGTCAGCGTTGTCTTTGCTGCCAAGACATACAAGTTACAATGG
AGTACAGATAATGTGACCTGGCATTATTTGGAAGACTCTGGTTCACCAAA
CATTTTCCCAGGCAATGAAGACGGAGATACGATTGTTTACAACTTCATTG
TTCCGCATTTGAAAGCGCGTTATTTGAAGTTTATACCGATTGAATACAAC
AATCTGAAGTGTATGAGAGTCGGAGTGCTTGGTTGGAAGAATGTGAATGA
ATGTGAGAACGGTTGGAACAGATGTGATCCATTGGCCAAATGTACGGATA
CTGTGGATTCTTATTATTGCACATGTCCAGTTGGTTATCACGATGCTTTG
TACAACGGTTTCTTTTGTGTGCAAATCAACGAGTGTATCGAAAGAAGACC
TAGTTATAAACATAATTGTAGCCATCTTGCAACCTGTACTGATTATGATG
GTGGCTTCAATTGTGACTGCAATCCAGGTTTTCGTGGTGATGGTTATTAC
TGCGAAGATGCTATTGAATGTGAGATGACACCACCTGCAAATCCTGGGTA
TTGGTGCAAACCACTTGCTGATTGTATCAACACTTTTGGCAGTTACGAAT
GCAGATGCAAACTTGGATACGACG Run BLAST on NCBI transcript from alignment at scaffold_122:116234..120755+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047124 ID=TCONS_00047124|Name=TCONS_00047124|organism=Clytia hemisphaerica|type=transcript|length=4522bp|location=Sequence derived from alignment at scaffold_122:116234..120755+ (Clytia hemisphaerica)
TAAAAATCATGATGTgaagattgaaaaagaatgtgaATGAGAAGAAGAGC
AACAAGAAGTAATGTTTTATAGCAAATCATCATTACTTCTtattgtattt
ctatgttttgttTATGTGGAAAGTCAAACATACCATAAAGGGGAAGTGTG
CGGTGCTGGCCATTCATGCCCTTTAGATTGTGTCACCTACCCTGGTCAAT
TTTACTGTGTTTGCCGTCAAGCTCATATTGCCCCGGGTCCAGGCTTAACA
TGGAAAGAGAATTTCACAGATTGTACCAATGATTACAGTCCGTATGGTAT
TCATCCTTATGAGTCAGGAGCAGTTGTTGGATTTCCATTTTTCGATTATG
AGAGGCTTCCCAATGAAATGTTTACCAGTAATAACGTAAGtcgaattttt
aatttttataattcgaacatTTTTGACTTCCCGTTGGACCTTGAATAAGC
GAGAGTTAACTATATGATTATCCTAGGTTCATGGGCCCCGTCAGTGGGGG
GTCGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNagaatgtcccacattttcaggttggattttccat
tggattttatcttttttccaactaagaaaacttgaaatttccaaccttgg
aaatcgaaaattttttccagtgATAGATTGTTTTGAAgatataaaaagtg
aaaaattttctttgtcgcccaaccatggtgggcgacatttttttccaaaa
tgttgaCCCCCATATGTTGGCCCCCTTAATCAAAATGGCTTGCCGGGGCC
CACGAGGTTGTTTTATCATACTGTCACTATACCAATTGAACAAAAATTCA
AAGGAGCTTATTTTAACAGAACTAATTACCTCGATGTGATGGTATTGAAG
CGGTATATTTTGCGGGACTTATTCGCACTGTCGACCCTCAACTTTCAaag
gttttcaaatttttgaaaccttaaGTGATACAAAAATTATTGTAACTGCA
CTTTAAATTCTTATTTCCTATTACTGGTTTTCTGTCTACAGTTTCATCAC
TCAAATTTCAGAGCCATTTCATTCGTTCTCGTTCTTAAAGTTCTTAAAGA
ATCTTGTAAATAATGATACTTTATCATGCTAAAATCAGTTTAAACTAATT
TTAGTCTTAAACATTTTCTCAGGTTTATCAAGATTTTTTACCTCGTAATG
CTCGTTTGAATGCCAATGAGAACAACAAAGGTTCCTGGTGTGCTCCTGGT
GATTCTACTGAATCGTGGCTCATGGTTGATCTTGGTAATGTTTCAACCAT
ATCTGCAGTAGGTTCCCAAGGAAGAGCTGGCGTCAGCGTTGTCTTTGCTG
CCAAGACATACAAGTTACAATGGAGTACAGATAATGTGACCTGGCATTAT
TTGGAAGACTCTGGTTCACCAAACATTTTCCCAGGCAATGAAGACGGAGA
TACGATTGTTTACAACTTCATTGTTCCGCATTTGAAAGCGCGTTATTTGA
AGTTTATACCGATTGAATACAACAATCTGAAGTGTATGAGGTAACAGTTT
TATTCTTATATGAATAATTGTATAGTAAGTCAATTATATTTTAATTAAAA
CACATGGGATTAAAAATTCGGACAAAAATCGTCCCTGATGAGAATTACTA
CGATAGTATAAAACTTACCGGATTTCTGTGCTAAAAATAAGGAAGTTGAA
ATTCTCACTCAATTAAATGACAAGAGGTTTTCCTTCCCTATttgctttta
gaaaaatcagtTATCAAAATAACTAAACAATTCTTACTtctttaatggga
ttaattttcgcggggattacatttcgcggatttcgtcgatttggaaattt
gaaaaggtcttatccgcgaaattcttttaattaaatttcagaaaatgtCC
TAAGACCACTTTTATCATGTTTACCgccatcaaagaagcgctaatagtGT
GTATTTCACAACCAACATGCATAGTAAACcactcaaaaaaaattaaaaag
tctcTGAAATTACCAGTGTTCAAAACACTGGCGTAAATCTTaaagtttca
ctttttcactttttcttgcctttttaaccttttttgtcCGCTGACGTTTT
GACGTTTTGATGCTCCTTATTAAACTAGGTATACTATGTATCCTATGTGC
TCTTATCTTTTCATTGATAGAGTCGGAGTGCTTGGTTGGAAGAATGTGAA
TGAATGTGAGAACGGTTGGAACAGATGTGATCCATTGGCCAAATGTACGG
ATACTGTGGATTCTTATTATTGCACATGTCCAGTTGGTTATCACGATGCT
TTGTACAACGGTTTCTTTTGTGTGCAAATCAACGAGTGTATCGAAAGAAG
ACCTAGTTATAAACATAATTGTAGCCATCTTGCAACCTGTACTGATTATG
ATGGTGGCTTCAATTGTGACTGCAATCCAGGTTTGTATTTTACCTTTcgt
ttatatttttcataaatttgagtAAGGCGAATAGTATTCGGTCAATCTTT
AGAATCCTTAGCATCTTTCGTGAGACGCAACCGCATGTGACTGGTTCAAA
AGTATAtatgattttaagactttttgaaAGGGGGCCCGCAAATTAGGCCT
TGCTGTAGGCAAAACTCCTAACCAAGATAGATAGGTGGAAAGttgacaat
ttttcaaagtcgaactaaaagaaaatgattggatacaaaaaaaaagtata
ctacaaCAAATCAACAAAATTCTTTCAGATGGAGTATGATTGACATCAAA
TTTTGTCTGACAGatttcagataattttaaagCTTTCAGGGTGTTTGAGT
ACAAGACTCAGTAtacttttttttctcagaaagtCATGCTCTATCCTATT
TTCcagttttgtaaaaaaagataattctaaattgaaaattttgcatATAT
GATGAGAATAACTGGAAGTATATCGTACCCcctttttgttttgagttgTT
ATCGATCTTGTTCGGTTGGCCAGAGAACTCCATTGTTATTAGAATTTGTC
AATAATTTCCGCATTATCCGTTCAGGTTTTCGTGGTGATGGTTATTACTG
CGAAGATGCTATTGAATGTGAGATGACACCACCTGCAAATCCTGGGTATT
GGTGCAAACCACTTGCTGATTGTATCAACACTTTTGGCAGTTACGAATGC
AGATGCAAACTTGGATACGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047124-exon-scaffold_122-1491911889:116234..116618 | TCONS_00047124-exon-scaffold_122-1491911889:116234..116618 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1510915933:116234..116618 | TCONS_00047124-exon-scaffold_122-1510915933:116234..116618 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1575043694:116234..116618 | TCONS_00047124-exon-scaffold_122-1575043694:116234..116618 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1491911889:118892..119123 | TCONS_00047124-exon-scaffold_122-1491911889:118892..119123 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1510915933:118892..119123 | TCONS_00047124-exon-scaffold_122-1510915933:118892..119123 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1575043694:118892..119123 | TCONS_00047124-exon-scaffold_122-1575043694:118892..119123 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1491911889:119754..120013 | TCONS_00047124-exon-scaffold_122-1491911889:119754..120013 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1510915933:119754..120013 | TCONS_00047124-exon-scaffold_122-1510915933:119754..120013 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1575043694:119754..120013 | TCONS_00047124-exon-scaffold_122-1575043694:119754..120013 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1491911889:120609..120755 | TCONS_00047124-exon-scaffold_122-1491911889:120609..120755 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1510915933:120609..120755 | TCONS_00047124-exon-scaffold_122-1510915933:120609..120755 | Clytia hemisphaerica | exon |
| TCONS_00047124-exon-scaffold_122-1575043694:120609..120755 | TCONS_00047124-exon-scaffold_122-1575043694:120609..120755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_122 | supercontig | scaffold_122:116234..120755 + |
Blast
BLAST of TCONS_00047124 vs. Swiss-Prot (Human)
Match: FBN3 (Fibrillin-3 OS=Homo sapiens GN=FBN3 PE=2 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 7.845e-16 Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = 1
Query: 613 MRVGVLGWKNVNECENGWNRCDPLAKCTDTVDSYYCTCPVGYHDALYNGFFCVQINECIERRPSYKHNCSHLATCTDYDGGFNCDCNPGFRGDGYYCEDAIECEMTPPANPGYWCKPLADCINTFGSYECRCKLGYD 1023
+R G G +V+ECE G + CD A C + S+ C C G+ + +GF C ++EC+ S +H CS C + G + C C GF GDG++CED EC A C C+N G Y C C++G+D
Sbjct: 1271 VRKGATGCSDVDECEVGGHNCDSHASCLNIPGSFSCRCLPGW---VGDGFECHDLDECV----SQEHRCSPRGDCLNVPGSYRCTCRQGFAGDGFFCEDRDEC-----AENVDLCDN-GQCLNAPGGYRCECEMGFD 1394
The following BLAST results are available for this feature:
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