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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047079 ID=TCONS_00047079|Name=TCONS_00047079|organism=Clytia hemisphaerica|type=transcript|length=1188bp
ATCAAAACAAAGAGTTCGAGCATCGTTCGAAATCAAATTTACTGGGCACT
TTTTGCAATCTGTATTTCCTTTGTCAGGTTTAAACATATTTTGAGGACAC
TTCCCACAATGCGTACCGTAGCTTCTCTCCCATCTCCCATCATCGTAATA
CCCGTGACGTAATTCTTCTCCCTGGTTACAATGTGGAATGGTTAAATTAC
AGAACGGACGAGACTCTTCAATAATTTTGGTTGGATTAAACATATCAGAT
ACTCGCCATTCTTCAGCTGTCTTATCTTTTAAAGCGTATACGGCTTTCCA
AGCTCTCAACAAGCCTACTACAGTGGATTCTTGTTCTAATAGTTTGTCGG
CAAGTCTCGATCGGGTACTGTTTGCGATATTCAACCATTGTTCTTGAGTA
ACCCGATCTCCCGGTTTGTAACCAGGGATGAGAAACCTCAAAAAATTTCT
ATACGATTCATCAATATAGTCTATGACGACTAGAATCCCTTGCTCTCCAT
TCACAACCTGCTCTCTAAATTTTGTGATCCGCTCGAAAATGTCCTCCAAC
GCTAAATATCCTGGAACATTCTGGAACCTCTCATAATTATCTTTGTTGCT
TAGCAACTCATCTTCGGTCATATTGCGTGTGTATGGCGTTataaagaaat
cattttcaagaaattcaAAACGGCGAAACCAATGAGATCTATGAATTTTA
TTGAAAGCCTTTCGCGACGAATAGACGACAAGAAATCGCAATCTAGGGTC
TTCTTTGATTTTGGCCATTGTTGCATTTCCATTACTGATGTTTCGGTAAT
CAAATAAAATCTCCTTATAGCATTGATCTCGTACGTCATTTGCGTCTATA
TTAGCCAAATGACAAAAACCAGATTCTAGACGCTCGTTACAAGGTTTACG
TATGAGGTCGGTATCATTTTCAAACTCTTTGGCGAATAGAATTCCAGCAT
AAGTGATTCCTAACTCTCTAGCTGTCCGATGGTTGATCTCCTCCTGGTTC
TCTTCTCCTAGACTAGAAGCATGGCTGTAgatattgtatattttttctct
caacTGAGACGGATACATTTCGCGGAACGTTACTGAGATGAAAGGAACTG
ATTCGTTGATAATAAGACAGCTTAAAATCTTTGTCATCTCAAAAGATAGA
TAAGCGAATATGATGCTTTTTTCTTCTctcttaaaaat Run BLAST on NCBI protein sequence of TCONS_00047079-protein >TCONS_00047079-protein ID=TCONS_00047079-protein|Name=TCONS_00047079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
IFKREEKSIIFAYLSFEMTKILSCLIINESVPFISVTFREMYPSQLREKI
YNIYSHASSLGEENQEEINHRTARELGITYAGILFAKEFENDTDLIRKPC
NERLESGFCHLANIDANDVRDQCYKEILFDYRNISNGNATMAKIKEDPRL
RFLVVYSSRKAFNKIHRSHWFRRFEFLENDFFITPYTRNMTEDELLSNKD
NYERFQNVPGYLALEDIFERITKFREQVVNGEQGILVVIDYIDESYRNFL
RFLIPGYKPGDRVTQEQWLNIANSTRSRLADKLLEQESTVVGLLRAWKAV
YALKDKTAEEWRVSDMFNPTKIIEESRPFCNLTIPHCNQGEELRHGYYDD
GRWERSYGTHCGKCPQNMFKPDKGNTDCKKCPVNLISNDARTLCFD Run BLAST on NCBI transcript from alignment at scaffold_120:44045..45232 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047079 ID=TCONS_00047079|Name=TCONS_00047079|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at scaffold_120:44045..45232 (Clytia hemisphaerica)
atttttaagagAGAAGAAAAAAGCATCATATTCGCTTATCTATCTTTTGA
GATGACAAAGATTTTAAGCTGTCTTATTATCAACGAATCAGTTCCTTTCA
TCTCAGTAACGTTCCGCGAAATGTATCCGTCTCAgttgagagaaaaaata
tacaatatcTACAGCCATGCTTCTAGTCTAGGAGAAGAGAACCAGGAGGA
GATCAACCATCGGACAGCTAGAGAGTTAGGAATCACTTATGCTGGAATTC
TATTCGCCAAAGAGTTTGAAAATGATACCGACCTCATACGTAAACCTTGT
AACGAGCGTCTAGAATCTGGTTTTTGTCATTTGGCTAATATAGACGCAAA
TGACGTACGAGATCAATGCTATAAGGAGATTTTATTTGATTACCGAAACA
TCAGTAATGGAAATGCAACAATGGCCAAAATCAAAGAAGACCCTAGATTG
CGATTTCTTGTCGTCTATTCGTCGCGAAAGGCTTTCAATAAAATTCATAG
ATCTCATTGGTTTCGCCGTTTtgaatttcttgaaaatgatttctttatAA
CGCCATACACACGCAATATGACCGAAGATGAGTTGCTAAGCAACAAAGAT
AATTATGAGAGGTTCCAGAATGTTCCAGGATATTTAGCGTTGGAGGACAT
TTTCGAGCGGATCACAAAATTTAGAGAGCAGGTTGTGAATGGAGAGCAAG
GGATTCTAGTCGTCATAGACTATATTGATGAATCGTATAGAAATTTTTTG
AGGTTTCTCATCCCTGGTTACAAACCGGGAGATCGGGTTACTCAAGAACA
ATGGTTGAATATCGCAAACAGTACCCGATCGAGACTTGCCGACAAACTAT
TAGAACAAGAATCCACTGTAGTAGGCTTGTTGAGAGCTTGGAAAGCCGTA
TACGCTTTAAAAGATAAGACAGCTGAAGAATGGCGAGTATCTGATATGTT
TAATCCAACCAAAATTATTGAAGAGTCTCGTCCGTTCTGTAATTTAACCA
TTCCACATTGTAACCAGGGAGAAGAATTACGTCACGGGTATTACGATGAT
GGGAGATGGGAGAGAAGCTACGGTACGCATTGTGGGAAGTGTCCTCAAAA
TATGTTTAAACCTGACAAAGGAAATACAGATTGCAAAAAGTGCCCAGTAA
ATTTGATTTCGAACGATGCTCGAACTCTTTGTTTTGAT Coding sequence (CDS) from alignment at scaffold_120:44045..45232 >TCONS_00047079 ID=TCONS_00047079|Name=TCONS_00047079|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_120:44045..45232 (Clytia hemisphaerica)
atttttaagagAGAAGAAAAAAGCATCATATTCGCTTATCTATCTTTTGA
GATGACAAAGATTTTAAGCTGTCTTATTATCAACGAATCAGTTCCTTTCA
TCTCAGTAACGTTCCGCGAAATGTATCCGTCTCAgttgagagaaaaaata
tacaatatcTACAGCCATGCTTCTAGTCTAGGAGAAGAGAACCAGGAGGA
GATCAACCATCGGACAGCTAGAGAGTTAGGAATCACTTATGCTGGAATTC
TATTCGCCAAAGAGTTTGAAAATGATACCGACCTCATACGTAAACCTTGT
AACGAGCGTCTAGAATCTGGTTTTTGTCATTTGGCTAATATAGACGCAAA
TGACGTACGAGATCAATGCTATAAGGAGATTTTATTTGATTACCGAAACA
TCAGTAATGGAAATGCAACAATGGCCAAAATCAAAGAAGACCCTAGATTG
CGATTTCTTGTCGTCTATTCGTCGCGAAAGGCTTTCAATAAAATTCATAG
ATCTCATTGGTTTCGCCGTTTtgaatttcttgaaaatgatttctttatAA
CGCCATACACACGCAATATGACCGAAGATGAGTTGCTAAGCAACAAAGAT
AATTATGAGAGGTTCCAGAATGTTCCAGGATATTTAGCGTTGGAGGACAT
TTTCGAGCGGATCACAAAATTTAGAGAGCAGGTTGTGAATGGAGAGCAAG
GGATTCTAGTCGTCATAGACTATATTGATGAATCGTATAGAAATTTTTTG
AGGTTTCTCATCCCTGGTTACAAACCGGGAGATCGGGTTACTCAAGAACA
ATGGTTGAATATCGCAAACAGTACCCGATCGAGACTTGCCGACAAACTAT
TAGAACAAGAATCCACTGTAGTAGGCTTGTTGAGAGCTTGGAAAGCCGTA
TACGCTTTAAAAGATAAGACAGCTGAAGAATGGCGAGTATCTGATATGTT
TAATCCAACCAAAATTATTGAAGAGTCTCGTCCGTTCTGTAATTTAACCA
TTCCACATTGTAACCAGGGAGAAGAATTACGTCACGGGTATTACGATGAT
GGGAGATGGGAGAGAAGCTACGGTACGCATTGTGGGAAGTGTCCTCAAAA
TATGTTTAAACCTGACAAAGGAAATACAGATTGCAAAAAGTGCCCAGTAA
ATTTGATTTCGAACGATGCTCGAACTCTTTGTTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047079-exon-scaffold_120-1491911889:44045..45232 | TCONS_00047079-exon-scaffold_120-1491911889:44045..45232 | Clytia hemisphaerica | exon |
| TCONS_00047079-exon-scaffold_120-1510915933:44045..45232 | TCONS_00047079-exon-scaffold_120-1510915933:44045..45232 | Clytia hemisphaerica | exon |
| TCONS_00047079-exon-scaffold_120-1575043694:44045..45232 | TCONS_00047079-exon-scaffold_120-1575043694:44045..45232 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:44045..45232 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011641 | Tyr-kin_ephrin_A/B_rcpt-like |
Blast
The following BLAST results are available for this feature:
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