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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046931 ID=TCONS_00046931|Name=TCONS_00046931|organism=Clytia hemisphaerica|type=transcript|length=3796bp
ATTGGAAACttctaaaaagttttcaaattcgTGCTTTTATCTCTTACTTC
ACTTGATAGAATCTACGAAAGGGGAAAGCACTTATCACTAAAACTTGACT
TATGAGCAACCtcaaaaatgaaagataaaGGTGTCATCTCATTTCTTTGG
TGAAATGGAGGTCAACCCTCATGGTTAAACAGAAAATCTTCTTATTTTGA
AAAGGtgcaaagaaaatgaaaaggtaaaacaaaaaagaagaattaagTCA
AAATAAAGAGATTTTGAGGTCAAACTTGATACGAATTTTAGGAtagaaaa
catttttatgatgaAGATCTGTAGAGCAGATATTTTGACGAATTGATATC
AATTAAAGGAAATGCTTTTGAAGGTATCACAAATGCAAACAttacgaaaa
atgaaatttgttaTGCTTTTGTTCACCTTAATAATCACAAAACATCTAAC
TCAATGCAGAAAAATATTGGAAGAAATCGGTTTTTTCAACACTGCTCACC
ATTTACAAACAGAATCGCAAACACGACATTCTATAAGACTCACCATTGAT
CCTAAAAAACTCACCACGAGATTCAAAGAAGGCTTACAGAGATCACTCAA
ACCTTTTAACGATAATTTAAAAGCCATACAACGAAGAGCGGAGAAACTTT
ACTCCGAACATCAAAGCATCGAATTAAAGGACAGATACTATTATCACCGT
CGTATCAATTACGATCTTCCAGTCAGAAAGGTGATCTCATTTTCCGGGCA
TACCAACATCAATGTAAACGAGAGTTTCATGCAAGTACCGACCGACGTAT
ATGACCAAAACAAACTACTTATCAATCAAGTCATCTGGTCCAAACGTCTG
gatgcaattttccaagaacaGTACGATTCAAATCCACAATTCTCTTGGCA
ATATGTTGGCTTCACAACAGGCGCTACCAGACAATACCCTGGATCACACT
TGGTGAAAGACTCGAACCGGAAGATCGATTTATACGACTGCAGACGTCGA
TTATGGTACAACCAAGCCATCAATTCTCCCAAAGATGTTGTCATTCTAAT
GGACATGTCCGGATCAATGACTGGTGCCCAtttcaaaatctcaaaactga
TCGTCCAATCACTGCTCGATACTTTACAACAAGATGACTTTTTCAACGTT
CTCTACTTCAATCAAGCAACAGGCTTTCTTATCGATTGTTTAAATGACAC
ACTAGCCCAAGCGACCTCTTACAATAAGAATCAATTCAAACAAGCAGTAA
CCAGGCTACAATCACCGAAATCAGTTGCCAATTTCCCTACAGCACTGAAG
AAAGCTTTTCGCTTGATTAACAAGGTTTCGACACACCGAGCGACGTCTTC
ATCGAGCTGCAACAAAGTCATCATGCTCATCTCAGACggtattgattttg
atgaacacaCACATGAAATATTGGACGATGAGAATGCAGAGAAAGAAGTC
GTTATCTTCTCTTACATCGTTGGTCAGTCTACCGATGAAGGACGGGCGGA
GATGAAAGATATTGCATGCCAGAGTGGCGGTGAACATTATGATTTCCCAA
CCGTCGGCAATGTCTTAGACGGAGTGCTAAAGTACCAAAAACGTTTAAGT
CAACCGCTGGGCCAAAGTTTGGATGATCACGTGATTTTCACACCTTTATA
TCTCGATGGATCGGGGTTGGGGATGATGACCACTATATCCACAGCTGTAT
TCAGCAACAAAAATGATAGCGATACCCGAGAGCTGATTGGTGTAGCTGGA
ATGGATATTGTTGTCTCGTTGCTACAACAACAATACCCTGTCCAAAAGAT
GGGCGTTTTCGGACATGCTTTTGCGATCAACAATAATGGTTTGTTTTTAA
TGCATCCCAAGTTTAAAGACCAGTCAGGTTATTTGCCTGACCCAGCCACC
GTTTATTTGGACGAAGTTGAATTTACTACCAATCCATCAAAAGGAATCGA
GTTAAAACGAGCTATGATCAACAATGAGACGGGATGTATGAATGCCGAAG
CTGATTGGCTGTTTCCTAAGCATTCCAGTCAACGAGTGGTCCGTTTAAAC
AATACCTATTGTTATCGACCAATGGAAAAGACTCCTTTCTTCGCAGGTGT
TTCTATGCCACAACAAAACGCTATACAGATGGTGGCTGATAAAACGAAAG
CTCATTTATTCCGTCGATCAGGTATCAATGCGTTACATTCTGATGATCCG
AATGTCATCATTGAAGTTGCTGAATGGTCTTTTTGTGACATTCGAACGGA
AGGTGAAAAGAAACAACCCGCTTCCATCAAGTATTATCCAACAGCTGAAG
ACTTGTATCAGTACTTGAAAAACAATGATGAAGATCTAGACGAAAAATGT
GACGAGGAGATGTTGTTAACTTTACTTCTATCAGCATCAGTGGTCGCAAA
CTTCACCAGAGATCACTGGTCTGTTGAAGAGCTCACTCATAACAACATCA
CTGACGCTTATATTATCACCTCTTCCGGTTTCACCTACATCTTATCGACA
GATGTCAACAATACTAAACGATTGGATCGAGACATCTTTGAAGAGATTCG
ATTCACACATCCCGCATCATTCTaccaaaaagaatttcataatCAGCTGA
CTTTCAGCGTCGACATCAAATCAGGAAAACCACAGAATCTCCATGATAAA
GAGGTCTTCAATAACGAGGAGATTGGGAATATAGCGATTGGTAAATCAGT
TTACACGGGAGATGAAAATACGATGCTTGGAGTCGTCGGAATGTCAGTCC
GAGTGGATTTTATGAATAGAATCATGCACGAGGCTGCACAAAATATCACT
GATTCTGATTGCAGTAAAAATTCATCACAAAAATGTTACTTAATTGATGA
AAATGGGTATATTGTTGCTACAAATAGACCAGTTAATCGGGTCGGTTATT
TTCTTGGTTGGTATGAAGGCCAACTCATCGAGGACatggaaaaaagagaa
attttggAAGTGCGAGAATACAACGATACACAAGCAGAATGTCCACAACA
ATCGGATACTTCATCCTCCTCTCCAGCTAATATCTTGAAAACATTTTACT
ACACTGTCTTTCAGTTAGTATACAACGTGTTGGCACATACATTAGCAATC
ACGTGGTGGATGTTGACTAGCCTACTGACCGTCAGTATGAACGCTATTGG
GGTTTCAGCGGCTAGTAGAAATGTCAGTTGTACCAAAACTATCGAAATCT
ATTTACTTAAAAACAGAAGTATTGATACAGAGGGAGCTTTTAATTGCTCC
TCTAATTGCAGTCAAAAATATATCATCCAAAGTATTCCAGATACTAACTT
AGCTCAGGTCATAATAAATAACAATTGCCGTGGGGCTGACGAATgtccat
tattttcaaaaaacaatgagcCGAAACGGACAAGGGATCTCACTGTATGT
GAGCAGCCTCTTCGCTATCGAAGGGCTTTGTCAGTTTGTTATAAATTGAC
TGGAGAAGACAAACGAGCGTGTTTTGATGTTAATGAGAACAAAGAATCGA
ACATTATCATTTATCTTATCGTATTCATTTCCATCTGTTTTGCAATCATT
ATAGCGATTAGTTTTAATATGTATTTTCGTAAATATTTTCATGGCAGGTG
TATGTAAGATATCTAGATAATTCTTAATTCTTGTgccaattcttaaaaaa
atggaaaggGAATGTTGCTTTCCTTAAGCATTGGACCAATGCTTAAGTAA
GATTTTAGACATTAAAGGTAAAATACTCGGCGCACAGATATGGCATGGGA
GAGTGAAGGAAAGAGATAAATATTTGTAGGGGTCTGGACACACCGG Run BLAST on NCBI transcript from alignment at scaffold_118:250863..261556- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046931 ID=TCONS_00046931|Name=TCONS_00046931|organism=Clytia hemisphaerica|type=transcript|length=10694bp|location=Sequence derived from alignment at scaffold_118:250863..261556- (Clytia hemisphaerica)
ATTGGAAACTTCTAAAAAGTTTTCAAATTCGTGCTTTTATCTCTTACTTC
ACTTGATAGAATCTACGAAAGGGGAAAGCACTTATCACTAAAACTTGACT
TATGAGCAACCTCAAAAATGAAAGATAAAGGTGTCATCTCATTTCTTTGG
TGAAATGGAGGTCAACCCTCATGGTTAAACAGAAAATCTTCTTATTTTGA
AAAGGTGCAAAGAAAATGAAAAGGTAAAACAAAAAAGAAGAATTAAGTCA
AAATAAAGAGATTTTGAGGTCAAACTTGATACGAATTTTAGGATAGAAAA
CATTTTTATGATGAAGATCTGTAGAGCAGATATTTTGACGAATTGATATC
AATTAAAGGAAATGCTTTTGAAGGTATCACAAATGCAAACATTACGAAAA
ATGAAATTTGTTATGCTTTTGTTCACCTTAATAATCACAAAACATCTAAC
TCAATGCAGAAAAATATTGGAAGAAATCGGTTTTTTCAACACTGCTCACC
ATTTACAAACAGAATCGCAAACACGACATTCTATAAGACTCACCATTGAT
CCTAAAAAACTCACCACGAGATTCAAAGAAGGCTTACAGAGATCACTCAA
ACCTTTTAACGATAATTTAAAAGCCATACAACGAAGAGCGGAGAAACTTT
ACTCCGAACATCAAAGCATCGAATTAAAGGACAGATACTATTATCACCGT
CGTATCAATTACGATCTTCCAGTCAGAAAGGTGATCTCATTTTCCGGGCA
TACCAACATCAATGTAAACGAGAGTTTCATGCAAGTACCGACCGACGTAT
ATGACCAAAACAAACTACTTATCAATCAAGTCATCTGGTCCAAACGTCTG
GATGCAATTTTCCAAGAACAGTACGATTCAAATCCACAATTCTCTTGGCA
ATATGTTGGCTTCACAACAGGCGCTACCAGACAATACCCTGGATCACACT
TGGTGAAAGAGTAAGCCATAATTTTCTCACAAATAACTGAATAACTCCGC
AGTATTGAGTGATAGATTTACACTTCAGTTTTATAGCTCATAGCCAGGGG
GCACGCAGTTACTACAAGACAGTACTTACTACCGTGGTGGTACTGTATTC
AGAAGTTATGAAAACAGTTACTACACAGTGTAGTAACTGCTGTTTGGGGG
TGGTGCCAAAAACTAAAACTAGCACTTTTGGTGTAGTAAGTGCTTATATT
TTAATTCTTTTAAAGAACTTTCAAAAATTTTCACAAAAAATGAATTTTTT
TGTGAAAAAATTCCTTGGTAAAAAAAATATTTTTGTCATAAATGGACGAA
AAAAAATTTGAAATTTTTCTCAGACCCAACTTTGAAATTATGCTTTCCTT
AATTATCATTAAAATGTTCTCAACAGCTGTTAACCAAGTAAATTAAAAGA
AAATCTAGCACAAAAATGGCTTTAGGTTGAAAAATAATCGCAATTTAGGG
TAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCGAGCATGTTTTTGATGATATCACTCAAAAACAGGGGTGGT
ACCTGGAAATCTTTTCTGAAAACAGTTACTACCAAGGTGTAGTAACTGCA
AAGGGTGGTGGTCCTGGAAAAAAAGTGTTGAAAAGGCACTTACTACCCAT
CATGTCTTTTAGTAACTGCGTGCCCCCCTGTCATAGCCGCTACTGTCAAT
TGAAGTATTGTTCATGTTTACGTTAGTGTTAGTAGTTCATTTTTCCCCTA
CATAACATCAGTGTTTCGATGTAAGTAGGCGGTACTGTGTAATCGCAGTA
GAGGCGATGTAATTATTACACCAAGCTGCTTTCTAAGAAAGGATTGCAAC
AAACTTGATTTTTTTCTTGATATTAGGTTTGGATGAATATAGCTTTAACA
AAAGAGCTCTATGATTCGCTGAACCAAATTAACCAATTGCAAGAAAAATC
AAGACATGGCGTTATAAATCCAGATTTAGAACACCATGGACATAGACTAG
TAATTTTCACCGAAAAAGGCTTACGCAGATATTTTATGTTTTTAGAAAAA
GGAAAGGTTATCTGCTCGTATCTAACCGACTCAAAAGAATCTGCTCGGAG
ACCAATGTCTTCAACAATTTATCTGATTGGAGCTTCATGTAAGGGTTTGC
GCAGCCTCGAAACACCCGTAGGTGGGGAGAAAAAAAACATACACTAGTAT
AATGATATGTCAGGCGTTCAATTCCACAGGGTCATCGATGAATATTAAGG
GTTCTAATTAGTCTGTGACAGTCATTTGGAAGGCTAATACCAACGATCCA
ATAAATTACGAAGTATTTTAAAATGAAGATCATTTTACAAAATAGAAAAA
GAGAAAAAAACCAAAAATGTTGTTTTTCATCGACAAAGAAAGAAATTAAG
AAGAAAACGTGAAGGAGTGAGAAGCCAGAAGAAGATAACATATTTCTCAT
TGCGATTCGATCAGGCTCGCCCTAAACGCATATGTTTATGCTTACGAGTA
GAAAACTAAAGGTTTTTGGTAATTTGAAACAAGTCTCTTTTGTAGACCCT
CCTTTAATCCGAATTTGAAATAAAAAAAATGATTAAATAAAGACATAAAT
TAGCCTAATTAAGAAGATTAGAAGGGAAATAGGAGCTCGATTATTGTTTT
GGCCGTTTTTAGCGAAACTGTTTGAAATTGAAGCTAGTGTCTTCGTTACT
GTAAATAAATGTACGAGGAAAATATGAGAACACATAAATAATGAATATAT
TTGGTAGTTGCTAGGACAAAACATTATATAATGAGACATTAAAAAAATAT
GCTTGGTTAACTATCACAGTATTGAAACATTTTGATAATTATTCAAGAAC
CATTCGCTTCTTTTTGAAGAAGAAGAAGAAGGAAGAAGAGAAAAAGAAAA
CAGAAGATTAACATTGGAAATAAAATGTTGTCGACGATAAGTTTTTGAGA
GCAGTCGTTATTGGAGGCACTAAAAATAACTTTTTTTTCAGCCAAGACCA
AAGGAAAAAGACCGTCGTTGATGTTTGAGAAAACTCAACAGATACATACA
GATCATATCAAACTCGCAAAGTTGTGAAAAAGAAGTCAAGAGCTTTCTCT
TTTTTTGATTAAGTTTCGTGGGAATGAAAAAGAGAATGGATGCAATGGTC
CAACAACATTGAACAAACAGTGAGAAGGGCGTCCTTTTTAAAAGAAAAAA
CGCCACGGGTGGTTATTGATTTTCAATCTTTTTTAATGAAGAAGTTGAAC
GCACGAAAAAGAATCAATCAGTTTATAAATTTAGAAAAACTCACTTCATT
TTCTATATATTGATTGCTTTGGAATGACACTGTTAAAGTTGAAAGAGAGA
ATTCTGTTGGAATTGACCTTACGAAATTTTGGAATTTGTTGATCAGTCAG
AAACTTATTTTTCATTATGGGCAAGAAGCATATTCAAATGTTCATTCGAC
ATCTTTACATGATGTGCATTTGGTATGTCAAATTAACAATCCTTATTCAT
TATTGTCAAAGCGTGAATAGCAGTATGATCGGAAGTTTGGATCAAATGTT
TAAGGTGGAGAAATTCGAACAAATTTACACAAAAAAACGCAAAGAAATTT
TCCAAATGAAGGAAGTTAAAGTTGGTGAATTATCGCAAAAATATGGGTCA
GACTTACGCGCGTTTTTACTGTCCCACATTAATGAACTCATGGAAATCAA
GAGAACTTCACAATTTCTTGAACAGAAGTACACGTATGATCCCCTTTTGA
AACCCTTTTATCAGTTCAACGATAAAGACCCGAATCCTGACCGCTTGGAG
ATCAGTTATTCAACAGAATTCAATGTTAACATCAATAACAGTTTTGTGCA
AGTACCAACTGAAATCTTTCGTAACCATACTACCATTTTGAATGAGATAA
ATTGGTCCAAAGGTTTAGATGAAGTATTCAGAAGAAATTACGAACGTAAT
CCAACGTTACAATGGCAATATATCGGTAAAGAGACAGGGGTGATGCGAAC
ATATCCAGGTGTAAAGTAAGTAAGATTTTGGGTTGATCGAGTCACTGCTA
AGTCCTTCAATCCAGAAATTATATTTCAAATGGTTGAGCATTTACAATTT
TTTCTTTCCTGTAGTAACCTTTATTTGATCTTTGACGCTCATAGAAGGAA
TTTATTGGGGAAGGTGGATTCCATATCAACATGGAACACAGGTTTCTTTT
GCCCTTTGTGCAATTCATTTCCTTCTTGCTAAGTTCTACAGTGAGAGTCG
CACATAGACTACAAAGTCAATAACCAAGATATGACTGCTGGCAATGATGA
TATACCAAGCAGAAAATTTATAGTGAATTTTTGAGAGCGATAACGCTGCT
TTCAAATTTATAAACTTTAAAGACAGTTAGTGTGAAGTTTTATTCTGCGA
ACTCGTCATTTTTACACCTTATTTCTTTTATAAAAAATTTAAGACCTAAA
ATTTTCTATTTAGACTGTTTCAGCACATATTGTGACATAATAGACAAAAT
ATTCTAGAAGGTCTTTCTCATGAATTATATACAAACTACACAGATTTTAT
TCGTTGAAAAAGATCGAAGAAGTTAGAAAAGGAATATTAATTTTTAAGAT
AGGACACCCTTAACATATGGTAGGGATATCGTGTAAGAAATAAGAAAATT
TCGAAAGATTTGAAATAATTAGACACTCTAAATAGTTACAGTGAAGTCTC
GATAACTCGAACACATATGGAGAACGTGTTCGACTTAAACAATATTTGAG
GTTGTTAGCAGAAGAGGCAGTAATATTTGTTCATGTAAAGAAAACATCCC
AGCTACAAAGATTCTAACTGTATGTTGAAACTTCGCGAAACTTTCATTGC
AACAATTCTACCACTGTCCTATGTTTTAGCACTTGTCTTTTTCCACGGTT
AAAGAACAAAGGCACAGTATATAAAGAGAAATTTGATTTTTTATTACAGA
ACGATGTTTAGGAGTCAGGGTTTTTTTCTGTTATAAAAATCGTTTATCAC
AATCAGTTTATTTATCTATTTATTTGAAAATATTAGAACGACATAAAATC
ATGGCTGCGATTTCAATCTTGATTGATGAAAGTAGATTGTGTTCCTGTTC
AGTACAAATGAAATATCTTATTTTTTCCCTTCAAAATTTTCCTCCATGTT
CTTAAAGAAGATAGATGTTCCATTGAGGTTTGGGACCTAAAATACATTTT
GAAATTGCAATGGTCTTTTTCTTTTTCCCATAAATTAGATTTGCTTTTTT
TGCGAGAAAGGTTAACTTGGTTTGAAGAATGTTGTTTCTTACTTTTCTTT
AAGGATGAGAACATTCCCTTTTTAAGACTTAGTTTTTGCAATGAAGTATA
TAATTTTCAAAATTCTTTATAAAATATGAGGCGATATTTGTTTAGCATGA
AAGCCCGAGGAAAACGTTTGTGATGAATGGTTACAGGTTATTAGGGCTAA
GATAACAAAAAATATTTATTAAAATAAAACAGAAAGATTTGTATGAAAAG
AGGAAAATGAAAATGGAAAAGTCTAGATTGCCAACAAAACAACAACTTTG
ATTTAGTTGGTGGTGAACGTTTGGAAAAGATCAAATCCACCATCATGGAA
AAACGTTTGATAATCTTTCTGTATTGGATTTTGACAAGATTTACAGTGAA
TATGGAATGCAGTACTGAAGACCTTGTAAAGAACACCTTTCAAATCGTAA
AACACCACGCATACCAAAATACTATACAAAATACATTAACGAAAGGGTTA
GTGATAGAACAGTCCATTGATTTGGAAAATATCAGTGTATCATTTGAAAG
TGATTTACGCGCATTACTGATGCCACGAACCAAACTACTAAACAATATCA
AATATAAAGCTAGAGAGCTGATAGACAATTACAAATGTGACGAAAATATA
GAAAATTTCAACTACTTCAACCGAAGATATCTACCTCCGAACCCTGTACA
AATCCATCCACAATTTTCAGAAGAAGTTCCTGTTGCCATCAATCGCAGTC
ATGTTCAATGTTCGACTGAGATCTTTCAAGGGTCCAAAGTTGTTTTGAAC
ATCGCCAAAGCGACCGAAAAGCTAGATGAAGTTTACCGCACAAATTACGC
TCAAGAGCCAACCCTTTTGTGGCAGTTCTTTTGTAGCACAATAGGCACAC
ATCGGGCTTTTCCTGGTAAAAAGTATGTAGTTTTGCCGGTGTATGGAAAT
GATCTTTATTAGGAATGGATATTTGCAAACGAGTCTCTCTGTTTTTTTTG
TATCTGCTTCCTTACTCTTTGTCCAACATTTTATGACGTTCCTGTTTTTA
ATGGCACGAATAAATCGATCCATTAAGCTTCACTGTGGAAATTAAAGCAA
TGACATTTCTTCTTCATATCATCCAGGGGATTAGATCTAATTATTTGAAG
AGGGGATTATTGCCAATATCGGGGATAAATTCATCAAAATTTACATCCAC
AAGTTTTCAGAGTACTACACTCATCTTTTCATTGTCATGTTAATCTAATA
TACACATTAGTGCCAATTTTATCCAATAATATCGATCGAAACAACAATAA
AGTGAAAACGTGTAAAGAAAGAAACAAAAGAGTTCTATTAATTGAACAGA
TAAATTGGGATTTGTTGCATTGGATCTTGAGGTCTGAAAACAAAACAATA
TTTTCATTTCTAAACATAAGGCGAAATACCATGAGTGAGGATCGAATGAA
TGGTACGAAGCACATTTATAAAAATTAAAGATCTTGAGGTCTGAAACACA
GAACAATATTTTCATTTCTAAACATAAGGCGAAATACCATGAGTAAGGAT
CGAGTGAATGTTATGTTACGAAGCACAATTAGAGAGAATAATCTAAAGAA
AGTCTGTTCCCTAATACAAAAATGAACCGTATCATATTTTCTTTATTGAT
AGCTCGAACCGGAAGATCGATTTATACGACTGCAGACGTCGATTATGGTA
CAACCAAGCCATCAATTCTCCCAAAGATGTTGTCATTCTAATGGACATGT
CCGGATCAATGACTGGTGCCCATTTCAAAATCTCAAAACTGATCGTCCAA
TCACTGCTCGATACTTTACAACAAGATGACTTTTTCAACGTTCTCTACTT
CAATCAAGCAACAGGCTTTCTTATCGATTGTTTAAATGACACACTAGCCC
AAGCGACCTCTTACAATAAGAATCAATTCAAACAAGCAGTAACCAGGCTA
CAATCACCGAAATCAGTTGCCAATTTCCCTACAGCACTGAAGAAAGCTTT
TCGCTTGATTAACAAGGTAGATAATGAAACAAACAAACGAATATGTTTTG
AAACCTGAATGTAATTGAGCAAATTTTTAACAGAAAGCAATCAAGGTATC
CAAATGACTTAAACAGTGATGAAACAATGAAAACTGCAACGTGCCATATC
AGGATATTCAAGTCATAATGTTTTCTATTGAAACACCACGTTTTACCAGT
AATGGCAAATTTAAGCTAGAGAGAAATTGTTTAAAATTTGCCACTACTGA
CAAAAACCGGGGTGGTTGCCGTAAAAATCAGAGATGTCAAAATATTTAAA
ACAGAAAGATTTCAAGTATTTTGTAATGCAGTAATTGAAATCCACTGTTC
GCTCCTATCTTGTTTTAGTGTGATCCTAATGCCTAATTTTGCCTCTATTT
TCTACCGCAGGTTTCGACACACCGAGCGACGTCTTCATCGAGCTGCAACA
AAGTCATCATGCTCATCTCAGACGGTATTGATTTTGATGAACACACACAT
GAAATATTGGACGATGAGAATGCAGAGAAAGAAGTCGTTATCTTCTCTTA
CATCGTTGGTCAGTCTACCGATGAAGGACGGGCGGAGATGAAAGATATTG
CATGCCAGAGTGGCGGTGAACATTATGATTTCCCAACCGTCGGTAAGTTC
GTTTGCTTTCTCGTATCGTAGTGAGTATATATTATCGTACCAGACTTGAG
CTTGATTCCTTTGCATACGTAGCTCTTTTAATAATTCTGAATCTTAAATG
CCAATAATAAAGGCCCAACCATTTATAAATTTATCAAAAATAAAGTTACA
AAAACAAAAGTTTCTTATTTTGCACTGTGTAGCCCGATTTTAGTGCATAT
TTTTGTCATATCCAGGAGTACAGCTTGTTAACTTCACACAATATATGTTG
CTTCCTAGGTTTGTTTTTAACTAAAAAATATCTCCATTGATTTAGTAAAA
AAACATGATAATGATTATGATCAAGTTACTCACTACGCATCTCTTTTTTA
ACAGGCAATGTCTTAGACGGAGTGCTAAAGTACCAAAAACGTTTAAGTCA
ACCGCTGGGCCAAAGTTTGGATGATCACGTGATTTTCACACCTTTATATC
TCGATGGATCGGGGTTGGGGATGATGACCACTATATCCACAGCTGTATTC
AGCAACAAAAATGATAGCGATACCCGAGAGCTGATTGGTGTAGCTGGAAT
GGATATTGTTGTCTCGTTGCTACAACAACAATACCCTGTCCAAAAGATGG
GCGTTTTCGGACATGCTTTTGCGATCAACAATAATGGTTTGTTTTTAATG
CATCCCAAGTTTAAAGACCAGTCAGGTTATTTGCCTGACCCAGCCACCGT
TTATTTGGACGAAGTTGAATTTACTACCAATCCATCAAAAGGAATCGAGT
TAAAACGAGCTATGATCAACAATGAGACGGGATGTATGAATGCCGAAGCT
GATTGGCTGTTTCCTAAGCATTCCAGTCAACGAGTGGTCCGTTTAAACAA
TACCTATTGTTATCGACCAATGGAAAAGACTCCTTTCTTCGCAGGTGTTT
CTATGCCACAACAAAACGCTATACAGATGGTGGCTGATAAAACGAAAGCT
CATTTATTCCGTCGATCAGGTATCAATGCGTTACATTCTGATGATCCGAA
TGTCATCATTGAAGTTGCTGAATGGTCTTTTTGTGACATTCGAACGGAAG
GTGAAAAGAAACAACCCGCTTCCATCAAGTATTATCCAACAGCTGAAGAC
TTGTATCAGTACTTGAAAAACAATGATGAAGATCTAGACGAAAAATGTGA
CGAGGAGATGTTGTTAACTTTACTTCTATCAGCATCAGTGGTCGCAAACT
TCACCAGAGATCACTGGTCTGTTGAAGAGCTCACTCATAACAACATCACT
GACGCTTATATTATCACCTCTTCCGGTTTCACCTACATCTTATCGACAGA
TGTCAACAATACTAAACGATTGGATCGAGACATCTTTGAAGAGATTCGAT
TCACACATCCCGCATCATTCTACCAAAAAGAATTTCATAATCAGCTGACT
TTCAGCGTCGACATCAAATCAGGAAAACCACAGAATCTCCATGATAAAGA
GGTCTTCAATAACGAGGAGATTGGGAATATAGCGATTGGTAAATCAGTTT
ACACGGGAGATGAAAATACGATGCTTGGAGTCGTCGGAATGTCAGTCCGA
GTGGATTTTATGAATAGAATCATGCACGAGGCTGCACAAAATATCACTGA
TTCTGATTGCAGTAAAAATTCATCACAAAAATGTTACTTAATTGATGAAA
ATGGGTATATTGTTGCTACAAATAGACCAGTTAATCGGGTCGGTTATTTT
CTTGGTTGGTATGAAGGCCAACTCATCGAGGACATGGAAAAAAGAGAAAT
TTTGGAAGTGCGAGAATACAACGATACACAAGCAGAATGTCCACAACAAT
CGGATACTTCATCCTCCTCTCCAGCTAATATCTTGAAAACATTTTACTAC
ACTGTCTTTCAGTTAGTATACAACGTGTTGGCACATACATTAGCAATCAC
GTGGTGGATGTTGACTAGCCTACTGACCGTCAGTATGAACGCTATTGGGG
TTTCAGCGGCTAGTAGAAATGTCAGTTGTACCAAAACTATCGAAATCTAT
TTACTTAAAAACAGAAGTATTGATACAGAGGGAGCTTTTAATTGCTCCTC
TAATTGCAGTCAAAAATATATCATCCAAAGTATTCCAGATACTAACTTAG
CTCAGGTCATAATAAATAACAATTGCCGTGGGGCTGACGAATGTCCATTA
TTTTCAAAAAACAATGAGCCGAAACGGACAAGGGATCTCACTGTATGTGA
GCAGCCTCTTCGCTATCGAAGGGCTTTGTCAGTTTGTTATAAATTGACTG
GAGAAGACAAACGAGCGTGTTTTGATGTTAATGAGAACAAAGAATCGAAC
ATTATCATTTATCTTATCGTATTCATTTCCATCTGTTTTGCAATCATTAT
AGCGATTAGTTTTAATATGTATTTTCGTAAATATTTTCATGGCAGGTGTA
TGTAAGATATCTAGATAATTCTTAATTCTTGTGCCAATTCTTAAAAAAAT
GGAAAGGGAATGTTGCTTTCCTTAAGCATTGGACCAATGCTTAAGTAAGA
TTTTAGACATTAAAGGTAAAATACTCGGCGCACAGATATGGCATGGGAGA
GTGAAGGAAAGAGATAAATATTTGTAGGGGTCTGGACACACCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046931-exon-scaffold_118-1575043694:260597..261556 | TCONS_00046931-exon-scaffold_118-1575043694:260597..261556 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1575043694:254091..254454 | TCONS_00046931-exon-scaffold_118-1575043694:254091..254454 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1575043694:253465..253696 | TCONS_00046931-exon-scaffold_118-1575043694:253465..253696 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1575043694:250863..253102 | TCONS_00046931-exon-scaffold_118-1575043694:250863..253102 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1510915933:260597..261556 | TCONS_00046931-exon-scaffold_118-1510915933:260597..261556 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1510915933:254091..254454 | TCONS_00046931-exon-scaffold_118-1510915933:254091..254454 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1510915933:253465..253696 | TCONS_00046931-exon-scaffold_118-1510915933:253465..253696 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1510915933:250863..253102 | TCONS_00046931-exon-scaffold_118-1510915933:250863..253102 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1491911889:260597..261556 | TCONS_00046931-exon-scaffold_118-1491911889:260597..261556 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1491911889:254091..254454 | TCONS_00046931-exon-scaffold_118-1491911889:254091..254454 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1491911889:253465..253696 | TCONS_00046931-exon-scaffold_118-1491911889:253465..253696 | Clytia hemisphaerica | exon |
| TCONS_00046931-exon-scaffold_118-1491911889:250863..253102 | TCONS_00046931-exon-scaffold_118-1491911889:250863..253102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:250863..261556 - |
Blast
BLAST of TCONS_00046931 vs. Swiss-Prot (Human)
Match: CA2D3 (Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Homo sapiens GN=CACNA2D3 PE=1 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 8.816e-93 Identity = 270/1032 (26.16%), Postives = 482/1032 (46.71%), Query Frame = 2
Query: 545 IDPKKLTTRFKEGLQRSLKPFNDNLKAIQRRAEKLYSEHQ-SIELKDRYYYHRRIN--------YDLPVRKVISFSGHTN---INVNESFMQVPTDVYDQNKLLINQVIWSKRLDAIFQEQYDSNPQFSWQYVGFTTGATRQYPGSHLVKDSNRKIDLYDCRRRLWYNQAINSPKDVVILMDMSGSMTGAHFKISKLIVQSLLDTLQQDDFFNVLYFNQATGFLIDCLNDTLAQATSYNKNQFKQAVTRLQSPKSVANFPTALKKAFRLINKVSTHRATSSSSCNKVIMLISDGIDFDEHTHEILDDENAEKEVVIFSYIVGQSTDEGRAEMKDIACQSGGEHYDFPTVGNVLDGVLKYQKRLSQPLGQSLDDHVIFTPLYLDGS-----------GLGMMTTISTAVFSNKNDSDTRE-LIGVAGMDIVVSLLQQQYPVQKMGVFGHAFAINNNGLFLMHPKFK-----DQSGYLPDPATVYLDEVEFTTNPSKGIELKRAMINNETGCMNAEADWLFPKHSSQRVVRLNNTYCYRPMEKTPFFAGVSMPQQNAIQMVADKTKAHLFRRSGINALHSDDPNVIIEVAEWSFCDIRTEGEKKQPASIKYYPTAEDLYQYLKNNDEDLDEKCDEEMXXXXXXSASVVANFTRDHWSVEELTHNNITD-----AYIITSSGFT----YILSTDVNNTKRL----DRDIFEEIRFTHPASFYQKEFHNQLTFSVDIKSGKPQNLHDKEVFNNEEIGNIAIGKSVYTGDENTMLGVVGMSVRVDFMNRIMHEAAQNIT--DSDCS---KNSSQKCYLIDENGYIVATNRPVNRVGYFLGWYEGQLIEDMEKREILEVREYNDTQAECPQQSDTSSSS-----PAN-ILKTFYYTVFQLVYNVLAHTLAITWWMLTSLLTVSMNAIGVSAASRNVSCTKTIEIYLLKNRSIDTEGAFNCSSNCSQKYIIQSIPDTNLAQVIINNNCRGADECPLFSKNNEPKRTRDLTVCE--QPLRYRRALSVCYKL-TGEDKRAC 3472
ID +L + + ++ ++ ++ + AE+ + +H+ +L+ Y+ IN +L +++ + H N +N++ S +QVPT++Y+++ ++N V WS+ L+ +F + +D +P WQY G G RQYPG D N I +DCR R WY QA SPKDVVIL+D+SGSM G I+K V S+LDTL DDFFN++ +N+ ++ CLN TL QA NK F++ + +L + K + AL +AF +++ + S C++ IMLI+DG D + +++V IF+Y++G+ +K +AC + G T+ +V + V++Y LS+P + V++T Y+D + G +MTT++ VFS +N++ ++ L+GV G D+ V L + P K+G+ G+AFAI NNG L HP+ + + P+ ++V L EVE+ + L+ AM+N +TG + E K +RV+ + N Y Y ++ TPF GV++ + + + ++ G++ L D ++ EWS+C+ E + + + E + YLK + L +CD+E++ +L A VV+ +W+ L + +D A++ T +G + ++ + + N L +IF F ++ +S+ +G N + + + ++ ++ VG+ ++++F R A++ D CS + + CYLID NG+I+ + + G F G EG ++ + + D QA C ++S + P N L + + +LV ++ L +WW M A C ++ + +T G C +CS+ ++IQ IP +NL V+++++C P+ E + L CE + + RR C+ E+ R C
Sbjct: 82 IDGLQLVKKLAKNMEEMFHKKSEAVRRLVEAAEEAHLKHEFDADLQYEYFNAVLINERDKDGNFLELGKEFILAPNDHFNNLPVNISLSDVQVPTNMYNKDPAIVNGVYWSESLNKVFVDNFDRDPSLIWQYFGSAKGFFRQYPGIKWEPDENGVI-AFDCRNRKWYIQAATSPKDVVILVDVSGSMKGLRLTIAKQTVSSILDTLGDDDFFNIIAYNEELHYVEPCLNGTLVQADRTNKEHFREHLDKLFA-KGIGMLDIALNEAFNILSDF--NHTGQGSICSQAIMLITDGA-VDTYDTIFAKYNWPDRKVRIFTYLIGREAAFAD-NLKWMACANKGFFTQISTLADVQENVMEYLHVLSRPKVIDQEHDVVWTEAYIDSTLPQAQKLTDDQGPVLMTTVAMPVFSKQNETRSKGILLGVVGTDVPVKELLKTIPKYKLGIHGYAFAITNNGYILTHPELRLLYEEGKKRRKPNYSSVDLSEVEWE---DRDDVLRNAMVNRKTGKFSMEVKKTVDK--GKRVLVMTNDYYYTDIKGTPFSLGVALSRGHGKYFF----RGNVTIEEGLHDLEHPDVSL---ADEWSYCNTDLHPEHRHLSQL------EAIKLYLKGKEPLL--QCDKELIQEVLFDA-VVSAPIEAYWTSLALNKSENSDKGVEVAFLGTRTGLSRINLFVGAEQLTNQDFLKAGDKENIFNADHFPLWYRRAAEQIPGSFVYSIPFSTGP---------VNKSNVVTASTSIQLLDERKSPVVAAVGIQMKLEFFQRKFWTASRQCASLDGKCSISCDDETVNCYLIDNNGFILVS-EDYTQTGDFFGEIEGAVMNKLLTMGSFKRITLYDYQAMCRANKESSDGAHGLLDPYNAFLSAVKWIMTELVLFLVEFNLC-SWWH------SDMTAKAQKLKQTLEPCDTEYPAFVSERTIKETTGNIAC-EDCSKSFVIQQIPSSNLFMVVVDSSCLCESVAPITMAPIEIRYNESLK-CERLKAQKIRRRPESCHGFHPEENAREC 1067
The following BLAST results are available for this feature:
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