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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046642 ID=TCONS_00046642|Name=TCONS_00046642|organism=Clytia hemisphaerica|type=transcript|length=7865bpRun BLAST on NCBI protein sequence of TCONS_00046642-protein >TCONS_00046642-protein ID=TCONS_00046642-protein|Name=TCONS_00046642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1189bp MNRFDAHPSIIFRANDPEFKMHQTVIDLYEEHPPPVNRQMSSTPPPMGTPRun BLAST on NCBI transcript from alignment at scaffold_116:317559..350525+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046642 ID=TCONS_00046642|Name=TCONS_00046642|organism=Clytia hemisphaerica|type=transcript|length=32967bp|location=Sequence derived from alignment at scaffold_116:317559..350525+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:317559..350525+ >TCONS_00046642 ID=TCONS_00046642|Name=TCONS_00046642|organism=Clytia hemisphaerica|type=CDS|length=39270bp|location=Sequence derived from alignment at scaffold_116:317559..350525+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046642 vs. Swiss-Prot (Human)
Match: GAS2 (Growth arrest-specific protein 2 OS=Homo sapiens GN=GAS2 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.588e-16 Identity = 50/144 (34.72%), Postives = 76/144 (52.78%), Query Frame = 2
Query: 710 LFALIEDESEWLMHLFPEETVSAASFFTDIEDGVLLCKLARLCHNYAEE--DAKTTKKRVPMFLFNIHSRTKCRGGFGKFMRRENVESFLRWCRVHKIPEPLLFESNDVVERTETEGMRENAREIVLCLMEVARLGVKYGVDPP 1135
L + ED + WL +L +E ++A +F +++G LLC+LA +E DA K +P L I +T G F R+N +FL WCR + E LFES +V + + RE+ LCL+E+ R+ +YGV+PP
Sbjct: 33 LLPMKEDLALWLTNLLGKE-ITAETFMEKLDNGALLCQLAETMQEKFKESMDANKPTKNLP--LKKIPCKTSAPSG--SFFARDNTANFLSWCRDLGVDETCLFESEGLV-------LHKQPREVCLCLLELGRIAARYGVEPP 164 The following BLAST results are available for this feature:
BLAST of TCONS_00046642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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