TCONS_00046614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046614
Unique NameTCONS_00046614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046614 ID=TCONS_00046614|Name=TCONS_00046614|organism=Clytia hemisphaerica|type=transcript|length=2749bp
aaggaggcgcaaccatggtttgcgccgacagaaaacttttcaattttcaa
cttttaactTATCTAAAAACGCCCCATATTATACGGATTTAGCACCAAAA
TAAAGCCCCCCTCAAATAAAATacatgagctgttgatacttgatattgaa
attttgtaccAAATAAGGCGATTTGGTCTACACtacatttttgttttctg
aaatttgctaAGAAAAATTACCTAATAATCTTTAAGCTTTTGCGCCGCTG
GTCTTAGTTTACTCTCCATTGATAATAAATGGCTAAAAAGAGGCAGGAAT
AATGAGCACGGAAACAAAAAACgggttctttgtaattttggcgccgcagg
caaaaatttGTTGTGTGAGAacggtcaaacagcttaaaaagaGCTgtttt
ctaaaaaggagaaagttagtcagcataagaccacaaaaaccacagcgaga
atcaacaagtttcgatctttttggtAATCTCTTATTTTtggggtgagcat
cctctttaacccctggtggatacacaacacttttCTTGCTTCGGCTTTTC
GTTCGCGATTCTATGTTGATCgtagtttcgaaaaaaaaactcaaaagaaa
GGATGCAAGAGCGCAACTCATTTTACGCCATCCAGATAAATAGTTCGTTT
GATTTAGGCTGAAACTAAATAGGTATTGACAGTCTGCAAAGAGAGCTCTG
CAAAGGAAGGACCACAGGAAGTATTTTATATTGAAAGGCAAATTAGATAT
GAttcgagggccaaccatggctTGGCCCGAGgaggcaaaatttgaaattt
aaagtgcccaaaatgctgaaaaacgcaTCTAAATCATGGGTTAATAGATT
ATAaagtaaaatgaaagaatttaatGATTGATGAGTGCTGCATTCGAGAT
CTCGAGAAAACGCGCCACACTCTGCAAACTTGGCTTTTTTTACCTGTTAC
ACCCTGGGTAGGGTATTATGATCAAAAAGTGCACATTTCCGGTAAAGAAA
TGGGTTAACAAAAACCATTATGCacacaattttaagaaaaagaggATGAG
ACAGGGTAGCTACCAAAAATAAGATATTCATTAGCTGAAATGTagattaa
aaaaacttttatgagATCCTTTGAAATATGGAGATTCACCGACAGTATTT
CTCAaattaccgaaataccgacccaAAATATCTATTTTACCGTCACCGCA
AGGTATGtccaacaccgaaataccgacactttttacttaaaacaccgaaa
caccgacgcaaaaaagggtcaataccgacacaccgacaaccccgtacgcc
ccccctgTAACATCTGTAATTGCTTCTCGACCCCAAGTAAGTCAACACAT
GCATCTCTCTTATTGATTTTGGAGTGaaaaaactttctaaattcATCATT
CTTCTTTTCCACCCCtataaaaagtaaaagtaagttGAGCCTATAGTTTC
AATATTGGTTAAAATGGCTTAACAAGGAAATTTCATATCAGTCCAAATGC
TCCCCATACGGTTCTGTgtaactttttttaatgtttattttttgtgCTCA
ATCGTTTAGAAGAGGGTACTTACCCTGTCCAGAAAATATCCTGAGAGTCT
TGTACTTTCTCAAAACATCTGGGACGTGTTTGACCATTATGTGGATGTAA
GGTGTCACTGGGTAGGACCAGTCGTAACCACATCCATTCATCCTTTTGAG
CTTGTACACCCATGCAATTGCctaaaaaatgtaaattgaTTAATTCTCTA
GGCTCGAAATCTGCAGTTATTGGACAAGTTTGGCACTCAAAATTAGTTGA
TAATACAAATTGTATTCACACCTTCAACTCAAAGTCGTCAATTTCAGCTG
GTGTCAATTCTGGTCTGTTCATGATGATGTAAAGCTCTTCAAAAGCCTGA
AATGGCTTTGGTTTACCTCATCCATATCAAGGATTGAATGAAACAACCCA
TCTTCCAACCGATCAGTGACGCGCAGTAGAAGATGGAGTTCATCCACACA
ATAATGTTCGATTGGAACGTTTTCCAGGATAGGGTCGTCTTTGCACCCAC
GTTGTTTTGACCATTTCGCGTCTATCGTTCTCTTCTTCCCAGTAAATGTT
GGATCTTGTCTGAAAGAGAGAGGTTGTTCTCACCTCTGTTCCCTTGTGAT
GTCACAATAAATACACGAGTTGTCCGAAGTAGCTTGTTTCATGCCGAGTA
TCACGAGAAGAAACTGTGGATAAAAAGTGAGATCATCACCTGAAGAAACA
AAAGATACTTTGCGATGCACTCAACCTACCTAAAGCACCAGAATGAGCAC
TAACTCGGTGATGTGGAATTTTACGGCTTTACCTGTCTTCCATTTGAAAG
ATGGTTCACCAGATTCGATTGATGATTGGCTCGAAGATTGTGATTGGCTC
GAAGATTGTGATTGACTCGAAGATTGTGATTGGCTCGAAGATTGTTGTGA
GGACGATTTCGACCATAGCGATGATCCTAAATATAAATtgtatttatttc
aaaaatgtttttttttatttacgaCAAAACTGCAATTTCTCTATTTTTTC
TGTACCGAACATCTATTTTGGAATGTATTGCTAGTGTCCTAGTTTTTGCT
TTACCTTTCTCGCAAGAAACTGTTATCTTGGTTGCGGATGGTGTCTTCAA
TTTGATCTGAGCGGATGTAAAGCCAAACTTTTTTGCAGGgcagaaaattt
gtaaaacacTATATAATTATATATATCAATTACCGAGCTTGTGTCAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_115:35123..39634+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046614 ID=TCONS_00046614|Name=TCONS_00046614|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at scaffold_115:35123..39634+ (Clytia hemisphaerica)
aaggaggcgcaaccatggtttgcgccgacagaaaacttttcaattttcaa
cttttaactTATCTAAAAACGCCCCATATTATACGGATTTAGCACCAAAA
TAAAGCCCCCCTCAAATAAAATacatgagctgttgatacttgatattgaa
attttgtaccAAATAAGGCGATTTGGTCTACACtacatttttgttttctg
aaatttgctaAGAAAAATTACCTAATAATCTTTAAGCTTTTGCGCCGCTG
GTCTTAGTTTACTCTCCATTGATAATAAATGGCTAAAAAGAGGCAGGAAT
AATGAGCACGGAAACAAAAAACgggttctttgtaattttggcgccgcagg
caaaaatttGTTGTGTGAGAacggtcaaacagcttaaaaagaGCTgtttt
ctaaaaaggagaaagttagtcagcataagaccacaaaaaccacagcgaga
atcaacaagtttcgatctttttggtAATCTCTTATTTTtggggtgagcat
cctctttaacccctggtggatacacaacacttttCTTGCTTCGGCTTTTC
GTTCGCGATTCTATGTTGATCgtagtttcgaaaaaaaaactcaaaagaaa
GGATGCAAGAGCGCAACTCATTTTACGCCATCCAGATAAATAGTTCGTTT
GATTTAGGCTGAAACTAAATAGGTATTGACAGTCTGCAAAGAGAGCTCTG
CAAAGGAAGGACCACAGGAAGTATTTTATATTGAAAGGCAAATTAGATAT
GAttcgagggccaaccatggctTGGCCCGAGgaggcaaaatttgaaattt
aaagtgcccaaaatgctgaaaaacgcaTCTAAATCATGGGTTAATAGATT
ATAaagtaaaatgaaagaatttaatGATTGATGAGTGCTGCATTCGAGAT
CTCGAGAAAACGCGCCACACTCTGCAAACTTGGCTTTTTTTACCTGTTAC
ACCCTGGGTAGGGTATTATGATCAAAAAGTGCACATTTCCGGTAAAGAAA
TGGGTTAACAAAAACCATTATGCacacaattttaagaaaaagaggATGAG
ACAGGGTAGCTACCAAAAATAAGATATTCATTAGCTGAAATGTagattaa
aaaaacttttatgagATCCTTTGAAATATGGAGATTCACCGACAGTATTT
CTCAaattaccgaaataccgacccaAAATATCTATTTTACCGTCACCGCA
AGGTATGtccaacaccgaaataccgacactttttacttaaaacaccgaaa
caccgacgcaaaaaagggtcaataccgacacaccgacaaccccgtacgcc
ccccctgTAACATCTGTAATTGCTTCTCGACCCCAAGTAAGTCAACACAT
GCATCTCTCTTATTGATTTTGGAGTGaaaaaactttctaaattcATCATT
CTTCTTTTCCACCCCtataaaaagtaaaagtaagttGAGCCTATAGTTTC
AATATTGGTTAAAATGGCTTAACAAGGAAATTTCATATCAGTCCAAATGC
TCCCCATACGGTTCTGTgtaactttttttaatgtttattttttgtgCTCA
ATCGTTTAGAAGAGGGTACTTACCCTGTCCAGAAAATATCCTGAGAGTCT
TGTACTTTCTCAAAACATCTGGGACGTGTTTGACCATTATGTGGATGTAA
GGTGTCACTGGGTAGGACCAGTCGTAACCACATCCATTCATCCTTTTGAG
CTTGTACACCCATGCAATTGCctaaaaaatgtaaattgaTTAATTCTCTA
GGCTCGAAATCTGCAGTTATTGGACAAGTTTGGCACTCAAAATTAGTTGA
TAATACAAATTGTATTCACACCTTCAACTCAAAGTCGTCAATTTCAGCTG
GTGTCAATTCTGGTCTGTTCATGATGATGTAAAGCTCTTCAAAAGCCTGA
AATGGTAAGAAAATGTGGCTCAAAATTTGTTTTCGTGATTTCTTCTCAGA
AAATTCTGAACAGGATAAAATGGAGGACAAGAAATAGCTCAATTATTAAT
GGTTTGGTTAGATCCAAAGTTACCTTCCATAACTCTCTTGTCGGAGCTAC
TTGGTCTTTGGGCAGGAACTCGTCAAAGTGGTCTGGTAACTTGGATAACA
TTCTTTTCTTATCATTCCCCATCAAAGAGGTCCATTCCACTTTGTTCTTC
TTGTTCCTCCAGAATTTGAGGGTGATACCAATTCCTTTCATCGCGGAAAC
TAGCTTTGACTGAATTTCCATGtttccatttttctaaaaaaaataattct
tataTCTAATATGTTCTCACACTACATAAGCACAATGACATCTCAGATCA
CACCCTTTGATGCTAACTCCTTTTGCTTTACACATCGAACAATGTAAGGG
ACTAATtagattgtttttattataCATATACAGGCTTTGGTTTACCTCAT
CCATATCAAGGATTGAATGAAACAACCCATCTTCCAACCGATCAGTGACG
CGCAGTAGAAGATGGAGTTCATCCACACAATAATGTTCGATTGGAACGTT
TTCCAGGATAGGGTCGTCTTTGCACCCACGTTGTTTTGACCATTTCGCGT
CTATCGTTCTCTTCTTCCCAGTAAATGTTGGATCTTGTCTGAAAGAGAGA
GGTACATGAGTTTTTTTATTAAAGCAAACATCATTATtgtattgaaaata
ttgaaCATTTTTCGTATTATGTAGATGGTGCAGGATGGTGTAGAAGCTAG
AAAACTCTGAACATGCTTTTAGCCTATGTAGCTTTCTACGTTAGAGTAGC
TTTATAAAAATCATCAATTGCATTAATCTTTTAGGTTGTTCTCACCTCTG
TTCCCTTGTGATGTCACAATAAATACACGAGTTGTCCGAAGTAGCTTGTT
TCATGCCGAGTATCACGAGAAGAAACTGTGGATAAAAAGGTAAATAGAAT
GATGTGAGGCTATTTTAAACTGATACCGAGGcgattttctttcttcaaaa
aactgaaTTAAAACACAATTAAGCACAAATGATGAGATTTTTTAAAGTGG
AAAAGAGAACGCATTTTTTTATTAGACCAGACCTCTGTACTTACTTTGTA
GTCTCCACCAATAAACAGTTCAACATCCAATTCTTTGCCACCAACCACAA
TTGTTGGTTTTTTCGCAATTTCGTTGACCTCAGTGATCAAATCTTGAAAG
CATTCTTTCACACACTCGTACGACTCACTAGCCATCCCAACTCCAACCGC
GTTGTTCCCTATATAGAAATAAtgttattttgtcaaaaaacttgaaaatc
caCAAGTAAATTAAATGCATGCTGTCGTCCTCGGGTGCTAGAAAATATGG
CTCCCCTTTTAAGAAAGTTAGGGACCCATCAGCCTGCCATGCCCCCGCAC
CCAGAAAACAGAACAGAATCATGCTCACCAGAACTTTTGTAAAACGAACC
AGATTCTTCTATAATCGTATATGACATGACCACAAGATTTGATTTTCGAG
TAAGTCTAGTCCCATCGCCACtgattttgagctattataacaaaagaaat
agaTTAATTGCTTAGGCTCTTCTCAATAAATAGGGCTCTGtttgtaagaa
aaaattaaaagtctTCATCAGAATAAACGAAGTTGCTCAAAAAAGGGGCT
ACTCAGGAAAAATAAAACTCGattgttagaaaaaataataaggctctttc
tttataaaatggcgattttttttAGAGGAAAGGGGGGGTCTTTAGACTAA
CCATTATGCTTTTCTCTGCCGACTTCACTCTCTCGTCAGTTTCCAGCTGG
CCCATTAGTCTCATCTGAGCGCCTACTGTCTTTCCAGGAGTTGGTTCGAT
ATCAAAACTTCTTGAAATCTGTTTCTGTATTTTTTCCACAGCATAAGTGC
GCGGAAGTCCAAACGCGATTTGAGAGAGCTCGTGATATGCTTTTGTGGAG
ACTGTATACCGATCCAAAACATAAATAACCGCTTTGGTCCTTTCAATTTC
AGTGAGATCATCACCTGAAGAAACAAAAGATACTTTGCGATGCACTCAAC
CTACCTAAAGCACCAGAATGAGCACTAACTCGGTGATGTGGAATTTTACG
GCTTTACATTTCAACTTTCGCTGATACGGAAAATACGGAAAATACCTGTC
TTCCATTTGAAAGATGGTTCACCAGATTCGATTGATGATTGGCTCGAAGA
TTGTGATTGGCTCGAAGATTGTGATTGACTCGAAGATTGTGATTGGCTCG
AAGATTGTTGTGAGGACGATTTCGACCATAGCGATGATCCTAAATATAAA
TtgtatttatttcaaaaatgtttttttttatttacgaCAAAACTGCAATT
TCTCTATTTTTTCTGTACCGAACATCTATTTTGGAATGTATTGCTAGTGT
CCTAGTTTTTGCTTTACCTTTCTCGCAAGAAACTGTTATCTTGGTTGCGG
ATGGTGTCTTCAATTTGATCTGAGCGGATGTAAAGCCAAACTTTTTTGCA
GGgcagaaaatttgtaaaacacTATATAATTATATATATCAATTACCGAG
CTTGTGTCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029758XLOC_029758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046614-exon-scaffold_115-1491911889:35123..37026TCONS_00046614-exon-scaffold_115-1491911889:35123..37026Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1510915933:35123..37026TCONS_00046614-exon-scaffold_115-1510915933:35123..37026Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1575043694:35123..37026TCONS_00046614-exon-scaffold_115-1575043694:35123..37026Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1491911889:37506..37723TCONS_00046614-exon-scaffold_115-1491911889:37506..37723Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1510915933:37506..37723TCONS_00046614-exon-scaffold_115-1510915933:37506..37723Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1575043694:37506..37723TCONS_00046614-exon-scaffold_115-1575043694:37506..37723Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1491911889:37907..38011TCONS_00046614-exon-scaffold_115-1491911889:37907..38011Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1510915933:37907..38011TCONS_00046614-exon-scaffold_115-1510915933:37907..38011Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1575043694:37907..38011TCONS_00046614-exon-scaffold_115-1575043694:37907..38011Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1491911889:39075..39179TCONS_00046614-exon-scaffold_115-1491911889:39075..39179Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1510915933:39075..39179TCONS_00046614-exon-scaffold_115-1510915933:39075..39179Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1575043694:39075..39179TCONS_00046614-exon-scaffold_115-1575043694:39075..39179Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1491911889:39218..39634TCONS_00046614-exon-scaffold_115-1491911889:39218..39634Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1510915933:39218..39634TCONS_00046614-exon-scaffold_115-1510915933:39218..39634Clytia hemisphaericaexon
TCONS_00046614-exon-scaffold_115-1575043694:39218..39634TCONS_00046614-exon-scaffold_115-1575043694:39218..39634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_115supercontigscaffold_115:35123..39634 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40574	0.236286	0.166577	0	0.276127	0.200165	0.525631	0.399305	0.372015	0.236493	0.235571	0.150883	0.144423	0.296191	0.36399	0.390539	0.188176	0.295661	0.315646	0.263444	0.1482	0.0453829	0.116373	0.146332	3.30845	2.99002	0	0.230351	0.0682027	0.0814735
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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