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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046556 ID=TCONS_00046556|Name=TCONS_00046556|organism=Clytia hemisphaerica|type=transcript|length=2647bpRun BLAST on NCBI protein sequence of TCONS_00046556-protein >TCONS_00046556-protein ID=TCONS_00046556-protein|Name=TCONS_00046556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=849bp MKVDYKFSNLCGTVYRKGNVVFSASGDRLYSPVGNRVTCFDLKNNKSSTLRun BLAST on NCBI transcript from alignment at scaffold_113:465517..484043- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046556 ID=TCONS_00046556|Name=TCONS_00046556|organism=Clytia hemisphaerica|type=transcript|length=18527bp|location=Sequence derived from alignment at scaffold_113:465517..484043- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_113:465517..484043- >TCONS_00046556 ID=TCONS_00046556|Name=TCONS_00046556|organism=Clytia hemisphaerica|type=CDS|length=51000bp|location=Sequence derived from alignment at scaffold_113:465517..484043- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046556 vs. Swiss-Prot (Human)
Match: PWP2 (Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=2 SV=2) HSP 1 Score: 844.729 bits (2181), Expect = 0.000e+0 Identity = 416/867 (47.98%), Postives = 579/867 (66.78%), Query Frame = 1
Query: 76 MKVDYKFSNLCGTVYRKGNVVFSASGDRLYSPVGNRVTCFDLKNNKSSTLPFENNCNISKICLCSQKNLLFSIDEVGKCLIYNLLTQTVVDTISFKKKVKCIKFSPSGEFYATTHARGFKVWRSPGITKTFHSTTLLKVLSGAYDETTCLNWSSDSRFIVIGGKDMTVRVYPVFSMEKFKVFSLTGHRSTIINCFFEKDSLNVYSISRDSALSVWTASHNPEELESK----------------YEVRKRKLXXXXXXXXXXXXXXXXXXXQVSWTLEKKHLFGQEK--SSISSAEYHEDKKILVVGHTSGVFQLYEMPEFIQIHSLSISQYKINTVAINASSEWLAFGSAALGQLLVWEWQSETYVLKQQGHFYDMNVMAYSPDGQYIATGGDDGKVKVWNTISGFCFVTFTQHSGGITGVEFSQNGQVILSSSLDGSVRAFDLNRYRNFRTFTGPRPCQFYCLALDNSGEIICAGSLDTFEICMWSLQTGRLLEVLSGHEGPVSCLSFSPAKAILVSGSWDKTVRLWDVYASTSPKDTISIGSDVTAVTHRPDGHEIAVASLDGEIRFWDPDTCRLNGSIEGRRDLLVGRRKNDLVSSKQLMSRRCFTSLCYSADGHHLLAGGKSRHVCIYHIRQEIMLRRFNISNNMSLDGMQVFKHSKRGMTEAGPIDLMDLDNRSDDEDGDKSLIALPGVKKGDMSSRRVQPEVQTKALRFSPAGRSWAAATTEGLLIFSLDGSVAFQPEGLDLDITPEKILELSNNKEHSNALNYAFRLNEQKYMIRVIENIKIDDVSTLVQGVPRMFLSKLLEFVGKQLEDSPHVQFYLAWCKHILSCHGGYIKSHSRSYLPTLRLIQKNLVRHSSSLTSL 2622
MK Y+FSNL GTVYR+GN+ F+ G+ + SPVGNRVT FDLKNNKS TLP N+ + L L +DE G L+ +L+ ++V+ FK V + FSP G + T +++ +PG + F++ L K G YDETTC++W+ DSR V+G KDM+ V+ + ++L GH+ I+ CFFE +SL++YS+S+D L +W PE L K E ++ + + G+ EE++ +V ++ K+ F +E +++++A +H+ +LV G SG+F L+E+PEF IHSLSIS I +VAIN+S +W+AFG + LGQLLVWEWQSE+YVLKQQGHF M +AYSPDGQYI TGGDDGKVKVWNT+SGFCFVTFT+HS G+TGV F+ G V+++SS+DG+VRAFDL+RYRNFRTFT PRP QF C+A+D SGEI+ AG+ D+FEI +WS+QTGRLL+VLSGHEGP+S L F+P K++L S SWDKTVRLWD++ S K+T+++ SD AVT RPDG E+AVA+L+ +I FWDP+ GSIEGR DL GR++ D +++K + FT+LCYSADGH +LAGG S+ VCIYH+R++I+++RF IS N+SLD M+ F + +R MTE G + L+D D + EDG I LPGV+KGDMSSR +PE++ +LRFSP GR WAA TTEGLLI+SLD V F P LD +TP ++ E ++ + A+ A RLNE K + +E + ++ + +P +++ K+LEF+ E S H++FYL W +L HG +KS + + LP ++ +QK++ RH L+ L
Sbjct: 1 MKFAYRFSNLLGTVYRRGNLNFTCDGNSVISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSRCFVVGSKDMSTWVFGAERWDNLIYYALGGHKDAIVACFFESNSLDLYSLSQDGVLCMWQCDTPPEGLRLKPPAGWKADLLQREEEEEEEEDQEGDRETTIRGKATPAEEEKTGKVKYSRLAKYFFNKEGDFNNLTAAAFHKKSHLLVTGFASGIFHLHELPEFNLIHSLSISDQSIASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTFTEHSSGVTGVTFTATGYVVVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDASGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPISGLCFNPMKSVLASASWDKTVRLWDMFDSWRTKETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHDLKTGRKELDKITAKHAAKGKAFTALCYSADGHSILAGGMSKFVCIYHVREQILMKRFEISCNLSLDAMEEFLN-RRKMTEFGNLALIDQD--AGQEDG--VAIPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDTRVLFDPFELDTSVTPGRVREALRQQDFTRAILMALRLNESKLVQEALEAVPRGEIEVVTSSLPELYVEKVLEFLASSFEVSRHLEFYLLWTHKLLMLHGQKLKSRAGTLLPVIQFLQKSIQRHLDDLSKL 862 The following BLAST results are available for this feature:
BLAST of TCONS_00046556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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