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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046490 ID=TCONS_00046490|Name=TCONS_00046490|organism=Clytia hemisphaerica|type=transcript|length=1314bp CAATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTATCCTCAAC AAATGATGTCTGCAACAACACAACAAGACTTCACCCAAGACAACAATCAA ATCGTCACAGAATCAATGTGTTACTCTCCGGACATCATAAGGTCTAATCA GAACCAAACTGCTTCCACAGGCAGCGCCTTCTCTCACATANCAACACAAC AAGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATATGTTAC TCTCCGGACATCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAG CGCCTTCTCTCACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAA CAACTACACAAACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTC ACAGCAATGACAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCG AGACATTCTTCAATACTTGATTGCTATGGAACAACACAACACATCTGCAA CACCCTCAACCTCTACAACTGAAACATGTTTCACGCACGATAACAACAAC GACAGGCAACATTTCCAACAAACTCAAACAGTAACCACACATCAACCATT CTGCACAGAAAACACCTCCCCGACATTCCACCACACGGAAAACACCTCCC CGACATTTCACAACACAGACACAACAAACACACCATCATTTCACAGTGAT TCTACCAATTTCTCTTTCTCACAAAGCGATACTTCAGACGACGATCACGA GACCAAGAAAGTCAAACGTTTGTACAAATTCAATCCCAAACCTCTCGTTT CCAAGCCCTCCATGCGTCGCCATCGCTACACCAACACGCAAGCACACGAG AACCCCGAATACTTCGAACGACGTCGCAAAAACAACGAAGCTTCAAGAAG ATCACGGTTAGCAAGAAGGTACAAAGAATGTCTCATCGTTGAAGAGAtgg aaaaattgaagaaagaaaacGAAGAGCTCAAAGAACAGATTCAAAAactg aaagaagaaaaacagaaCAATCTTTAACAAAGCCGTCAATCGGGTAATCG TCTCATCACAACACAACAGAAGAAATATCAAATTGTCGAACAAACGCATA TCCtttttttaaactaaaatgtAAATAATTTTCAACTATTAATTTGTAgg attttgtaaaaaagaaaacattttccctgtaaataaacaaagatcAAAGA AGCAAACAAATACATTTCTCAATGGTTCCACATTTTTTTACGTGAATGGT ACAAATGATAAAAACGTGGCAATCGATAATGGATGATTTGTATCCCTGTT GCTATGATACGATC Run BLAST on NCBI protein sequence of TCONS_00046490-protein >TCONS_00046490-protein ID=TCONS_00046490-protein|Name=TCONS_00046490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
NGEMSMEDFVSQSYPQQMMSATTQQDFTQDNNQIVTESMCYSPDIIRSNQ NQTASTGSAFSHIXTQQDFTQDNNQIVTESICYSPDIIRSNQNQTASTGS AFSHIETYTSSACSFPTTTQTNSNDCSSFTTSLTAMTTSTTNTNKEVNER DILQYLIAMEQHNTSATPSTSTTETCFTHDNNNDRQHFQQTQTVTTHQPF CTENTSPTFHHTENTSPTFHNTDTTNTPSFHSDSTNFSFSQSDTSDDDHE TKKVKRLYKFNPKPLVSKPSMRRHRYTNTQAHENPEYFERRRKNNEASRR SRLARRYKECLIVEEMEKLKKENEELKEQIQKLKEEKQNNL Run BLAST on NCBI transcript from alignment at scaffold_112:44985..46418+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046490 ID=TCONS_00046490|Name=TCONS_00046490|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at scaffold_112:44985..46418+ (Clytia hemisphaerica) CAATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTATCCTCAAC
AAATGATGTCTGCAACAACACAACAAGACTTCACCCAAGACAACAATCAA
ATCGTCACAGAATCAATGTGTTACTCTCCGGACATCATAAGGTCTAATCA
GAACCAAACTGCTTCCACAGGCAGCGCCTTCTCTCACATANCAACACAAC
AAGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATATGTTAC
TCTCCGGACATCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAG
CGCCTTCTCTCACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAA
CAACTACACAAACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTC
ACAGCAATGACAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCG
AGACATTCTTCAATACTTGATTGCTATGGAACAACACAACACATCTGCAA
CACCCTCAACCTCTACAACTGAAACATGTTTCACGCACGATAACAACAAC
GACAGGCAACATTTCCAACAAACTCAAACAGTAACCACACATCAACCATT
CTGCACAGAAAACACCTCCCCGACATTCCACCACACGGAAAACACCTCCC
CGACATTCCACCACACGGAAAACACCTCCCCGACATTCCACCACACGGAA
AACACCTTCCCGACATTCCACCACGCGGAAAACACCTCCCCGACATTCCA
CCACACGGAAAACACTTCCCCGACATTTCACAACACAGACACAACAAACA
CACCATCATTTCACAGTGATTCTACCAATTTCTCTTTCTCACAAAGCGAT
ACTTCAGACGACGATCACGAGACCAAGAAAGTCAAACGTTTGTACAAATT
CAATCCCAAACCTCTCGTTTCCAAGCCCTCCATGCGTCGCCATCGCTACA
CCAACACGCAAGCACACGAGAACCCCGAATACTTCGAACGACGTCGCAAA
AACAACGAAGCTTCAAGAAGATCACGGTTAGCAAGAAGGTACAAAGAATG
TCTCATCGTTGAAGAGAtggaaaaattgaagaaagaaaacGAAGAGCTCA
AAGAACAGATTCAAAAactgaaagaagaaaaacagaaCAATCTTTAACAA
AGCCGTCAATCGGGTAATCGTCTCATCACAACACAACAGAAGAAATATCA
AATTGTCGAACAAACGCATATCCtttttttaaactaaaatgtAAATAATT
TTCAACTATTAATTTGTAggattttgtaaaaaagaaaacattttccctgt
aaataaacaaagatcAAAGAAGCAAACAAATACATTTCTCAATGGTTCCA
CATTTTTTTACGTGAATGGTACAAATGATAAAAACGTGGCAATCGATAAT
GGATGATTTGTATCCCTGTTGCTATGATACGATC Coding sequence (CDS) from alignment at scaffold_112:44985..46418+ >TCONS_00046490 ID=TCONS_00046490|Name=TCONS_00046490|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_112:44985..46418+ (Clytia hemisphaerica) AATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTATCCTCAACA AATGATGTCTGCAACAACACAACAAGACTTCACCCAAGACAACAATCAAA TCGTCACAGAATCAATGTGTTACTCTCCGGACATCATAAGGTCTAATCAG AACCAAACTGCTTCCACAGGCAGCGCCTTCTCTCACATANCAACACAACA AGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATATGTTACT CTCCGGACATCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAGC GCCTTCTCTCACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAAC AACTACACAAACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTCA CAGCAATGACAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCGA GACATTCTTCAATACTTGATTGCTATGGAACAACACAACACATCTGCAAC ACCCTCAACCTCTACAACTGAAACATGTTTCACGCACGATAACAACAACG ACAGGCAACATTTCCAACAAACTCAAACAGTAACCACACATCAACCATTC TGCACAGAAAACACCTCCCCGACATTCCACCACACGGAAAACACCTCCCC GACATTTCACAACACAGACACAACAAACACACCATCATTTCACAGTGATT CTACCAATTTCTCTTTCTCACAAAGCGATACTTCAGACGACGATCACGAG ACCAAGAAAGTCAAACGTTTGTACAAATTCAATCCCAAACCTCTCGTTTC CAAGCCCTCCATGCGTCGCCATCGCTACACCAACACGCAAGCACACGAGA ACCCCGAATACTTCGAACGACGTCGCAAAAACAACGAAGCTTCAAGAAGA TCACGGTTAGCAAGAAGGTACAAAGAATGTCTCATCGTTGAAGAGAtgga aaaattgaagaaagaaaacGAAGAGCTCAAAGAACAGATTCAAAAactga aagaagaaaaacagaaCAATCTTTAAAATGGTGAGATGAGTATGGAAGAC TTCGTTTCACAATCCTATCCTCAACAAATGATGTCTGCAACAACACAACA AGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATGTGTTACT CTCCGGACATCATAAGGTCTAATCAGAACCAAACTGCTTCCACAGGCAGC GCCTTCTCTCACATANCAACACAACAAGACTTCACCCAAGACAACAATCA AATCGTCACAGAATCAATATGTTACTCTCCGGACATCATAAGGTCTAATC AAAACCAAACTGCATCCACAGGCAGCGCCTTCTCTCACATCGAAACGTAT ACAAGCAGTGCATGCAGCTTCCCAACAACTACACAAACCAACAGCAACGA CTGTAGCTCTTTCACAACCAGCCTCACAGCAATGACAACCTCGACAACAA ACACCAACAAAGAGGTCAACGAGCGAGACATTCTTCAATACTTGATTGCT ATGGAACAACACAACACATCTGCAACACCCTCAACCTCTACAACTGAAAC ATGTTTCACGCACGATAACAACAACGACAGGCAACATTTCCAACAAACTC AAACAGTAACCACACATCAACCATTCTGCACAGAAAACACCTCCCCGACA TTCCACCACACGGAAAACACCTCCCCGACATTTCACAACACAGACACAAC AAACACACCATCATTTCACAGTGATTCTACCAATTTCTCTTTCTCACAAA GCGATACTTCAGACGACGATCACGAGACCAAGAAAGTCAAACGTTTGTAC AAATTCAATCCCAAACCTCTCGTTTCCAAGCCCTCCATGCGTCGCCATCG CTACACCAACACGCAAGCACACGAGAACCCCGAATACTTCGAACGACGTC GCAAAAACAACGAAGCTTCAAGAAGATCACGGTTAGCAAGAAGGTACAAA GAATGTCTCATCGTTGAAGAGAtggaaaaattgaagaaagaaaacGAAGA GCTCAAAGAACAGATTCAAAAactgaaagaagaaaaacagaaCAATCTTT AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046490-exon-scaffold_112-1491911889:44985..45638 | TCONS_00046490-exon-scaffold_112-1491911889:44985..45638 | Clytia hemisphaerica | exon |
TCONS_00046490-exon-scaffold_112-1510915933:44985..45638 | TCONS_00046490-exon-scaffold_112-1510915933:44985..45638 | Clytia hemisphaerica | exon |
TCONS_00046490-exon-scaffold_112-1575043694:44985..45638 | TCONS_00046490-exon-scaffold_112-1575043694:44985..45638 | Clytia hemisphaerica | exon |
TCONS_00046490-exon-scaffold_112-1491911889:45759..46418 | TCONS_00046490-exon-scaffold_112-1491911889:45759..46418 | Clytia hemisphaerica | exon |
TCONS_00046490-exon-scaffold_112-1510915933:45759..46418 | TCONS_00046490-exon-scaffold_112-1510915933:45759..46418 | Clytia hemisphaerica | exon |
TCONS_00046490-exon-scaffold_112-1575043694:45759..46418 | TCONS_00046490-exon-scaffold_112-1575043694:45759..46418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_112 | supercontig | scaffold_112:44985..46418 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004827 | bZIP |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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