TCONS_00046468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046468
Unique NameTCONS_00046468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046468 ID=TCONS_00046468|Name=TCONS_00046468|organism=Clytia hemisphaerica|type=transcript|length=786bp
aaagataacaggtatagctttttctaatcctggaatatcgaggttccagc
tacactgactGTAGATAAGATATCATCCCGGGTTTGCCAAGTTTGCATTC
ATTCTCCAGATATCTCAAAAATCTCTCTATATATTCCGTAGATCCAACAC
AATATTCCATTAAAGTCAAAgtcaattcaaaattttcttccaaattttcc
aaacaaAATTTACAGAACTTCATTATTTTTCGGCAAATTTGAAGCGCTTG
ATTTGCATCTTTGCCACCCCCTCCAGCACTGCATATCCAAAATATAAAGT
CTTTAGCCAGTTGACATTTGTCCGAGAAAGATGAGATGTTCCAAGTTTTA
TTTCTGATTACTGCTCTTTTTGAAGAATAGATTTTATCTGTGAAAACNTA
GCACTGCATATCCAAAATATAAAGTCCTTAGCCAGTTGACATTTGTCCGA
GAATGATGAAATGTTCCAAGTTTTATTTCTGATTActgctctttttgaaa
aatagattttatctGTGAAAACTTCATCAATATTAGgtttactttcaaaa
taaaagtacCATCCGTGTTTCCTTACAACGTGTTTTCTGCAACCTCTTTG
ACTGTGGTAGCTATCACTGTCACAATTGGAAACAGGACAAACAAACAAGC
CAGCTGCATTTGGAGTCAGCTTGAGCCGTTTAGCCTTGGGACTTGCTCCT
TCAACGCCTTCCCAATCTTTCTTGCTGAAAGTTCTCTTCATCGCGTACAC
ACGTCATTTCTccatattttccaaataagCATTTAA
Run BLAST on NCBI

protein sequence of TCONS_00046468-protein

>TCONS_00046468-protein ID=TCONS_00046468-protein|Name=TCONS_00046468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MKRTFSKKDWEGVEGASPKAKRLKLTPNAAGLFVCPVSNCDSDSYHSQRG
CRKHVVRKHGWYFYFESKPNIDEVFTDKIYFSKRAVIRNKTWNISSFSDK
CQLAKDFIFWICSAXFSQIKSILQKEQ
Run BLAST on NCBI

transcript from alignment at scaffold_110:46731..47516

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046468 ID=TCONS_00046468|Name=TCONS_00046468|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at scaffold_110:46731..47516 (Clytia hemisphaerica)
TTAAATGcttatttggaaaatatggAGAAATGACGTGTGTACGCGATGAA
GAGAACTTTCAGCAAGAAAGATTGGGAAGGCGTTGAAGGAGCAAGTCCCA
AGGCTAAACGGCTCAAGCTGACTCCAAATGCAGCTGGCTTGTTTGTTTGT
CCTGTTTCCAATTGTGACAGTGATAGCTACCACAGTCAAAGAGGTTGCAG
AAAACACGTTGTAAGGAAACACGGATGgtacttttattttgaaagtaaac
CTAATATTGATGAAGTTTTCACagataaaatctatttttcaaaaagagca
gTAATCAGAAATAAAACTTGGAACATTTCATCATTCTCGGACAAATGTCA
ACTGGCTAAGGACTTTATATTTTGGATATGCAGTGCTANGTTTTCACAGA
TAAAATCTATTCTTCAAAAAGAGCAGTAATCAGAAATAAAACTTGGAACA
TCTCATCTTTCTCGGACAAATGTCAACTGGCTAAAGACTTTATATTTTGG
ATATGCAGTGCTGGAGGGGGTGGCAAAGATGCAAATCAAGCGCTTCAAAT
TTGCCGAAAAATAATGAAGTTCTGTAAATTttgtttggaaaatttggaag
aaaattttgaattgacTTTGACTTTAATGGAATATTGTGTTGGATCTACG
GAATATATAGAGAGATTTTTGAGATATCTGGAGAATGAATGCAAACTTGG
CAAACCCGGGATGATATCTTATCTACagtcagtgtagctggaacctcgat
attccaggattagaaaaagctatacctgttatcttt

Coding sequence (CDS) from alignment at scaffold_110:46731..47516

>TCONS_00046468 ID=TCONS_00046468|Name=TCONS_00046468|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_110:46731..47516 (Clytia hemisphaerica)
ATGAAGAGAACTTTCAGCAAGAAAGATTGGGAAGGCGTTGAAGGAGCAAG
TCCCAAGGCTAAACGGCTCAAGCTGACTCCAAATGCAGCTGGCTTGTTTG
TTTGTCCTGTTTCCAATTGTGACAGTGATAGCTACCACAGTCAAAGAGGT
TGCAGAAAACACGTTGTAAGGAAACACGGATGgtacttttattttgaaag
taaacCTAATATTGATGAAGTTTTCACagataaaatctatttttcaaaaa
gagcagTAATCAGAAATAAAACTTGGAACATTTCATCATTCTCGGACAAA
TGTCAACTGGCTAAGGACTTTATATTTTGGATATGCAGTGCTANGTTTTC
ACAGATAAAATCTATTCTTCAAAAAGAGCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029653XLOC_029653Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046468-proteinTCONS_00046468-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046468-exon-scaffold_110-1491911889:46731..47516TCONS_00046468-exon-scaffold_110-1491911889:46731..47516Clytia hemisphaericaexon
TCONS_00046468-exon-scaffold_110-1510915933:46731..47516TCONS_00046468-exon-scaffold_110-1510915933:46731..47516Clytia hemisphaericaexon
TCONS_00046468-exon-scaffold_110-1575043694:46731..47516TCONS_00046468-exon-scaffold_110-1575043694:46731..47516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:46731..47516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05457	2.13126	1.31073	0.394091	0.42205	0.757573	0.559811	0.475872	0.116972	0.576177	0.0666569	0.225799	0.81617	1.32152	0.0725964	0.520842	0.415336	0.0509206	2.00918	0.813646	0.321141	0.187815	0.582702	0.951269	0.0756789	0.118777	0.411595	0.109374	0.232769	0.170844
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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