TCONS_00046367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046367
Unique NameTCONS_00046367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046367 ID=TCONS_00046367|Name=TCONS_00046367|organism=Clytia hemisphaerica|type=transcript|length=1058bp
GAGAATTATTACTAACATTGAAAATAATCTgcgattttcagaaaaatgac
AAGTTATAAGCCACGACGAACAAAGgCTAATCACAGTGACTTATTGCTAC
CAGACGAAGACAATAGGGAAATGGACCAATTGAAAAACAGGATCGATACA
CTTCTCGATGAACAAGAAAAGAAACGACCTCAAGAAGATAGTCTCTCCGG
CTTGAAAGCAAGGCTTCGAGAAAAAGCATCAGAATGCAGTCGTTTGAAGA
TTCAGTTAGAAGACATGCGACAACAACAAGAAGCTAAAGATAACACTATG
ATCAAAATACAGGAACAAATACAACGCCTATTTGAGGAGAACGAGCTATT
ACGTCAGCAATTGGCCAGCGCCACCGCAATGCATTCCAACGGCTCCACCC
CGCACATCGCTACACCACGAATAACGAATGGTATGGTACCGCAAACTCCT
GAATCAGTCCGCTCGGCTTCCGTTCAAAAATCCAAATCCAAAGAAATCCT
ACAGATGAAAAGCGGATTGAAATCTGCAAGTGAACCAAATTTAAtaCGAG
ATGGAAACAGAAGTATTGGACTAGTTTCGCCACCTTCGCTTTCAGTCAAT
GGAGATGAAGCCATATACAGACCTTTTCGGCAACTTATATCAGACCAACC
GTTCACCACGTNAGGAAAAGGAGTGCTAACTATGATGAACTATCTATCTT
TCTTTAGACTTATATCAGACCAACCATTCACCACGTGGTCACTTGATCAA
GTGCAAGACTGGATGCGAGATGAAGGCCTAGAAGAATACGCCAATAATTG
CTCTAAATGTATCAAAAATGGTGAAGATCTCATCAAATTCACTTCtgcag
attttgaaaaaagtctcgGCATTTCAGATCCCATGATACGGAAGAAATTA
AATCTAGCCCTCAAGGCAATAACATCGAACAGTCCAGATTATGCAGGCCG
ACTCGATCATAATTGGGTGGCACGTTGGCTTGACGACCTTGGGTTACCGC
AATACAAACAGAATTTTTATATACATAAAGTAGACGGACGTGTTCTCGTT
AATATGAC
Run BLAST on NCBI

transcript from alignment at scaffold_109:153835..160134+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046367 ID=TCONS_00046367|Name=TCONS_00046367|organism=Clytia hemisphaerica|type=transcript|length=6300bp|location=Sequence derived from alignment at scaffold_109:153835..160134+ (Clytia hemisphaerica)
GAGAATTATTACTAACATTGAAAATAATCTgcgattttcagaaaaatgac
AAGTTATAAGCCACGACGAACAAAGGTAATACCCAGGCTTATGCATTTTA
AGTTTTGATGTTACACAACTATCTTGTACACTATACTTATGATTTTTGTC
TCTTTCAAAGCAAGCTGATATTATAGTACGTGATGTCTGTGTGAGTTATT
ATGTTTGAACtttcaaagcaaaataaaaaaactcgaATTCTTCGAGTTCT
ACTATTTGTTTGGTTTTCAAGGTCTATTTACCTTAAAATAGTATGTAAAT
ATTGTAAATAATTATAAATGTTGTAAAAGAGGAGAGGTTTTgagatgtta
ttatttttgagGTGATTTCATACGTGTTAGTTTAAATTTTAAGTATTGAA
GAGCTGTCCTGAGTTAATTTATGTAGGTGATATAGATGCCAATTTGTCAA
AGTGAAACCTGTAATACATAGTTTCATagtcttgggttttgatgaaccaa
aagcaaggggggtgttaaaagtatgaAGTATGACTTACCTAAAGGGGGAT
TGCCAGTTAAGGGGGgtcttcttacctaagggggggtcttcttagataAG
TTAGATAAgatcttccttgaattatgcaaaatttcaatcttttatttata
ctgattttctaagggaaaattttaaatgaatttcctaagggggggggggt
cctcttacctaagggggggtcttcttagataAGTTAGATAAgatcttcct
tgaattatgcaaaatttcaatcttttatttatactgattttctaagggaA
AATTTTAATggaatttcctaaggggggggggtcctcttacctatgggggg
gtcttgacccctctagaaactatgttAATAAGAATTTTTGTTTGTATCTT
TGACTAGACGCCTCAAATCGTAAACGAAAGAGAATAGAGAAGACAGGCTA
ATGAAATATTTAAGTCGGACCAGCCTATCTATtccctttcaaataaaaaa
tagaatatGTCCACATTATTTGACGACAACAGCCTGCAAACCAACAAGCT
TTATAAATACATAATTTATATGAACAGGATTTgtcttttttctcctttca
CGTTCGATGTCAACGAATGCTCAAAGCTAGATTGATGACTACAGATAATG
ACGTGAAGTTTTAAAGTCTTTGCTTTTCGGAGATTCTCATATGTTATAAA
GATGTCGAGCTTCTTTAGTTTAAATTCCATCCGCTTTTTATTGGTAGata
tcattttttcaaattctttatttttcaatgcGATCATGAATGttcatttt
ggcgggaattttatttttgggaGAAGGACTTGTTTGGTTGTTTCAAGAAG
AAAAAGACTGACCAAAAATACGAGTAATAGACCAAAAGAAGGGNAGGACT
TGTTTGGTTGTTTCAATAAGAAAAAGACTGACCAAAAATACGAGTAATAG
ACCAAATGAAGGGATTTTCTAAAGGCTCATTAAGAATTTCGAGatccaaa
tcaaaacattgtaGACGTGATGTGATTTTCTTATTCCATCCTTCATAATT
ACACATCTATAATTTGAGTGAATGAGTAGTCAGTTAAAAGATTACAAAAA
GATAGATTTTATGTTAAGATAATGTTTAAAAACGACCGAGTGTTCTTATA
TTATCATTTTGCACATTCGCGTAATTGATCTAAGAGACGCgtttaaagat
ttttgtgtTTGAAACGCTAAACTCAAGCTTGTAAATGTATATATCTTCAA
TACTTCAGGAAAGCGAGACATATGTCTGCTATCACATCAACTTACGAcaa
gttatttttctttataggCTAATCACAGTGACTTATTGCTACCAGACGAA
GACAATAGGGAAATGGACCAATTGAAAAACAGGATCGATACACTTCTCGA
TGAACAAGAAAAGAAACGACCTCAAGAAGGTATGCTGATCTTGGGTGTCA
GTTTTTTTAGGGGAGGGGGCTGTCTAGAGGGAAAATATCTCAGCTCGATT
ATACATGAAAGTGGGGCAGTTGTCTGGTTTGGACGTGTCTCATTTTTTGG
GCAACAATCAGCTTTCATTTCTTTAGTATGTACACTGAAATGTGGTTGAA
AtggcatacacgttttttttataagaacaaactatataataaaTTAAGGC
TGCGCTGGATAAAATGTTAAgatcaagttaagaacattttaaggctttgt
ggccttaaaaacaccctatttcttggaaaatggtcaaaaatattcacaaa
ataaggtctaaataagaacatgtttagaacatttttaggctttaaactca
aaaagttaagaacataagaaggcttcaaaaattttggatgttcttataaa
aaaacgtgtagtggtatagtggtcatcaTCCTTGGCTCCCGCCTGGGAGG
CCCGAGTACGATACTCACCGTGTCACTACGATTCACTCGACAGGTGAACG
TACCTTCACCCGTGTCAACCCATGCTATGTGTGGGGATTCGGGTACCATT
ACTCTGGTATGTGTGGGTAGGCTTGGCTCGACTCGAGTCGAGGCTCGgct
cccagtgtcgttcgagttTCAAGATGTACAGCATGGCTTGGtagtgtctg
tcagcgccgtgattcctactctTTCTGGAGTAGAACCCATCCCAAATGCA
TTCGGAAGGCTCGTATCTATCTATCTGTGGTTCAAATTTTGTTAGTTTTC
AATGATGATATTTTTTCTCCATCTACCGTTCGCATGTCGAAGTGTTGTTT
TTTGCtatccttttttacactttaCGATTAGCATAATGCTAATAGATTTT
TCGCACCTTATATTTTCATATAAACATACCTTGTAATTTCCTTATCAAAT
TTTCACCCAATGAATGGTCGTAAGTTTTAAATCCCTCTCAGTGATAATAA
ATAAGCTTGTGCTAGATGTTTTTGTAACTACAGTATTTCGTTAGTTGGGT
TCACGAGGAGAAAAATATGGATGGAACTGATGATGGTAATCTTTTCTGCG
TCTGCGCGTTGAGTACTTTTCgttgatttcatcatttttgtaTTTAACCT
AGCAGGTATTTTGATCGAAAGAAGAATTTtcatgaatgtttttttttgtt
tctctttTCAGATAGTCTCTCCGGCTTGAAAGCAAGGCTTCGAGAAAAAG
GTAGGAAATGATGATCATGATGGAGACTTATTCATACTGACATTGTATTT
GACAAGAAAATCAATTCAGACATACTTCTATACTATCAGAATAGGATatt
taatttgatttgaatttctAAATAATACGTGGTTTAGAAAATTCGGCTGT
TAGTACTAAACTATAAGACTGTCTCTCTAAACATCCTAGTTATTCCGATA
TAACGGAATAACCAGTCACGGCCAAAACTTTCAGGTTTTCAatgatcttt
tctttctttcctaAAGAGGTTTATGTTTTGTTGAGTTACGTAATTTAAAG
CATTATTGAAGTAAACGTTTGAATGTGAAGAGGCGACCCTCCTTACGcga
atcgaacgtttgcttccataacgACGGAAGTTatgtaacttaacaaaaca
cGTAAAATCTCTATACCAAAAAGACGTTCAAAGATAAATATTTCCGATTT
CCTACACCTCCAGCATCAGAATGCAGTCGTTTGAAGATTCAGTTAGAAGA
CATGCGACAACAACAAGAAGCTAAAGATAACACTATGATCAAAATACAGG
AACAAATACAACGCCTATTTGAGGTTTGTCTGCTATTGATTGCTTATTCA
AATATTCCACTGCACTGGTCAGAAGCAGGGGGGTCAGTATAGAAAGAAAT
CTagcaattcaaaaatttttattaccaAAAGAATAGTTTCAAGTTCGAAG
AGACCCTCGTTTTCAGCTTCAGAGTATCATGCCATTCAAGACATCATTTA
ACCATTTTCTTACGCAGCGTATATAGAGGCGCACCTCCcttctatatcat
aaaaaagaaaatctttaagacgaagtttaagtctatactatACATCGGTA
TTAAATAATAACAGTTTCAAATGAATCTCTTTCAAATCTCTTTCAAATGA
ATTCCTTCGTTTCCATAGGAGAACGAGCTATTACGTCAGCAATTGGCCAG
CGCCACCGCAATGCATTCCAACGGCTCCACCCCGCACATCGCTACACCAC
GAAGtaagtgaagaagaagaagatctaAGATTACTGTTTTGGTTTATCTT
CGTTGACTTCTTGACACCAGAAAAGAGCTTtataacaatgccttataagt
GATAAAAAATCTATGAATAAGGCTGGACTTGACAGCAAACCAAAATTTTT
CCCCAGTCAGGTCCAGTCTAACTCGAATCCTTGTAGTAAAATAAAGATTA
AACATTGttaatagtttgttcttttattaGCTTTTTGAGCTCGTATTAAT
ATACTGACTTTGCTTTTCTCTTTCTCCTTCAGTAACGAATGGTATGGTAC
CGCAAACTCCTGAATCAGTCCGCTCGGCTTCCGTTCAAAAATCCAAATCC
AAAGAAATCCTACAGATGAAAAGCGGATTGAAATCTGCAAGTGAACCAAA
TTTAAGTAAGTTTTTTTATCACTATAGACAGCTTTTAATGTTGATCTGAG
GTTATGGATGCACTGTAGTAGCCTGTTCACAGAAAAGACTTAATGTCGGT
TTCTGGCACTCTTgtaactttcttttctttttatattttcagtaCGAGAT
GGAAACAGAAGTATTGGACTAGTTTCGCCACCTTCGGTAGGTTAACCTAA
AATTATATTCTTTACTTTCCTACCGCGCGATTTCTTTATAAGTTTGTTGG
TCTATCACACGGTCTATTACGCGTTTGCTTTTTTATCGCAATTATGTCAA
ATCCTTGATAAAGACTGCAATGACTTACTATAAACGACGTCAATATATGT
AAAAAGTTTCAGACGGAATGGAATCGAGAATTAAAACCTGTGTTCTTGAC
CGTGTTACAGGCAAGGCTACGAACCACGATTGTTATTTCATTAGGTTTTA
CGACCCCACACAAAaccattttttcattatttctctATTGTACAATCAGT
GATCAAAGCAgatcaaagttcttccgtctcagacggatttccgtctcaca
gaaatttttgtcaaagttttccaCCTTAGTTAGAAATGGTTTTATTTAGC
AAGAAATAGTGATTTTTGATAGATATTTATTTTCGCTGTATGATAggcat
tctaagaacattctgagTTGTTTTAATAAACAAATTTTAGTGCCTTTCTA
GCCAATATagggggtaaaaaattttctgtctcatagaaaaaaaaatgctt
TGACCACTGTACAATATATCAGATCAATACCTAGTTTGATTCATTTCCTG
gccttttttttatcttcacgTTATTGCTTCTTTTTAGCTTTCAGTCAATG
GAGATGAAGCCATATACAGACCTTTTCGGCAGTAAGATTCATTCCTTTTT
CAATTTACGACACTATTTCTTCTTTATCTTTTGGATTCTCTTACCTTAAC
TAATATAATGAACCGTTTGTGTTTTTATCCTATGAATCTATTATCATTGG
CCTTGTTATATGAATAGAACAATACCTTTTGTATTCTTCTCTTTTCTTGT
TTCTTGCTATCAAGCCTCTGCCCCCTCCCTAGGAAAAGGAGTGCTAACTA
TGATGAACTATCTATCTTTCTTTAGACTTATATCAGACCAACCGTTCACC
ACGTNAGGAAAAGGAGTGCTAACTATGATGAACTATCTATCTTTCTTTAG
ACTTATATCAGACCAACCATTCACCACGTGGTCACTTGATCAAGTGCAAG
ACTGGATGCGAGATGAAGGCCTAGAAGAATACGCCAATAATTGCTCTAAA
TGTATCAAAAATGGTGAAGATCTCATCAAATTCACTTCtgcagattttga
aaaaagtctcgGCATTTCAGATCCCATGATACGGAAGAAATTAAATCTAG
CCCTCAAGGTACGGACTACTTAAATTAAAACTAAATGTCAAAAACACTTG
TCACTGCCCGTTCAGCCTCATTTTATCGAGCTATTTTTGAtaagaatgtt
tttatatgaactTCAAGAGATTTTCATCGAGAGGCTCAGTTCTCTAGGCG
TGaattacttttgtttttttgctacAAAGTTTTTCAATATATGTTTTCCT
TATTAAGGCAATAACATCGAACAGTCCAGATTATGCAGGCCGACTCGATC
ATAATTGGGTGGCACGTTGGCTTGACGACCTTGGGTTACCGCAATACAAA
CAGAATTTTTATATACATAAAGTAGACGGACGTGTTCTCGTTAATATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029597XLOC_029597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046367-exon-scaffold_109-1491911889:153835..153909TCONS_00046367-exon-scaffold_109-1491911889:153835..153909Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:153835..153909TCONS_00046367-exon-scaffold_109-1510915933:153835..153909Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:153835..153909TCONS_00046367-exon-scaffold_109-1575043694:153835..153909Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:155652..155763TCONS_00046367-exon-scaffold_109-1491911889:155652..155763Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:155652..155763TCONS_00046367-exon-scaffold_109-1510915933:155652..155763Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:155652..155763TCONS_00046367-exon-scaffold_109-1575043694:155652..155763Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:156946..156984TCONS_00046367-exon-scaffold_109-1491911889:156946..156984Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:156946..156984TCONS_00046367-exon-scaffold_109-1510915933:156946..156984Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:156946..156984TCONS_00046367-exon-scaffold_109-1575043694:156946..156984Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:157448..157557TCONS_00046367-exon-scaffold_109-1491911889:157448..157557Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:157448..157557TCONS_00046367-exon-scaffold_109-1510915933:157448..157557Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:157448..157557TCONS_00046367-exon-scaffold_109-1575043694:157448..157557Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:157903..157987TCONS_00046367-exon-scaffold_109-1491911889:157903..157987Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:157903..157987TCONS_00046367-exon-scaffold_109-1510915933:157903..157987Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:157903..157987TCONS_00046367-exon-scaffold_109-1575043694:157903..157987Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:158267..158389TCONS_00046367-exon-scaffold_109-1491911889:158267..158389Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:158267..158389TCONS_00046367-exon-scaffold_109-1510915933:158267..158389Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:158267..158389TCONS_00046367-exon-scaffold_109-1575043694:158267..158389Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:158527..158570TCONS_00046367-exon-scaffold_109-1491911889:158527..158570Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:158527..158570TCONS_00046367-exon-scaffold_109-1510915933:158527..158570Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:158527..158570TCONS_00046367-exon-scaffold_109-1575043694:158527..158570Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:159222..159265TCONS_00046367-exon-scaffold_109-1491911889:159222..159265Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:159222..159265TCONS_00046367-exon-scaffold_109-1510915933:159222..159265Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:159222..159265TCONS_00046367-exon-scaffold_109-1575043694:159222..159265Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:159510..159792TCONS_00046367-exon-scaffold_109-1491911889:159510..159792Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:159510..159792TCONS_00046367-exon-scaffold_109-1510915933:159510..159792Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:159510..159792TCONS_00046367-exon-scaffold_109-1575043694:159510..159792Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1491911889:159992..160134TCONS_00046367-exon-scaffold_109-1491911889:159992..160134Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1510915933:159992..160134TCONS_00046367-exon-scaffold_109-1510915933:159992..160134Clytia hemisphaericaexon
TCONS_00046367-exon-scaffold_109-1575043694:159992..160134TCONS_00046367-exon-scaffold_109-1575043694:159992..160134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:153835..160134 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.786058	0.251665	0.0915813	0	0	0	0	0	2.30348	0.863346	0	0.719925	2.91236	2.40995	0	0	4.98071	2.57919	3.17746	4.33781	3.44291	3.67926	1.70819	2.3696	0	0	0.911269	1.0017	0.631903	0
Blast
[Close]
BLAST of TCONS_00046367 vs. Swiss-Prot (Human)
Match: LIPB1 (Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.106e-27
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:  718 DQPFTTWSLDQVQDWMRDEGLEEYANNCSKCIKNGEDLIKFTSADFEKSLGISDPMIRKKLNLALKAITSNSPDYAGRLDHNWVARWLDDLGLPQYKQNFYIHKVDGRVLVNM 1056
            D PF  W+ +QV +W+ ++GL  Y N+    I +G+ L++ +  D EK LGI   + RKKL LAL+A+ S      G+LD NWV RWLDD+GLPQYK  F   +VDGR+L  M
Sbjct:  641 DMPFAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYM 753
The following BLAST results are available for this feature:
BLAST of TCONS_00046367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIPB12.106e-2746.90Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2[more]
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