TCONS_00046390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046390
Unique NameTCONS_00046390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046390 ID=TCONS_00046390|Name=TCONS_00046390|organism=Clytia hemisphaerica|type=transcript|length=702bp
TTAGAGAAGACGCACTTTACAACTCCACATTGAATCAAGCTCAATTGACG
AATATTAAGGTTAAATCTAAAGACGATCAgcaataaaaattgaaaaatgc
taAATATGCGAGTGATCAATCTGGGGACAATTGGGGTAATTATTTTATGT
GCTCTGATCAACATCTCTGGTTTGGTTGGTACTTCATGGATGGTGAATGG
GCAGATTCATGAAGGTCTGTGGAAGCATTACGACGACGGGGAAAATTCTA
CACAAGATATTGATGGAAGAGATGCACTCAAAGCTACAAAGACGCTATTG
ATTATGGCTTGTTTTACACTAGCGATTTCCTGTGCGTATTGGTCCTTAAT
TTCACTCGCAAAGGATATGAATGCAAAAATATTGGCTGCTATGCTACTTG
CAACAAGTTTGATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAGCCAA
TTTCTCGGACAACGTCTGGAATATCACTTTGGATGGTCGTATATTATTGT
TTGGTGCTCAACGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTAATCA
AAAGAAGTTATGCACCTTTCAGCTGAATTTTCAAAGTAAATTAAGCTAGT
CTTGTAATAGGGTTTATTTGAAAAACCGTTAAACTATTCTTGGTTGTTGT
AGACCGAATTATTATTTTACTTTGTGAATTTGTATAGCTATGCAAAGAAA
AC
Run BLAST on NCBI

protein sequence of TCONS_00046390-protein

>TCONS_00046390-protein ID=TCONS_00046390-protein|Name=TCONS_00046390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MLNMRVINLGTIGVIILCALINISGLVGTSWMVNGQIHEGLWKHYDDGEN
STQDIDGRDALKATKTLLIMACFTLAISCAYWSLISLAKDMNAKILAAML
LATSLMQVIALSVYANSQFLGQRLEYHFGWSYIIVWCSTVLIFVPAGLCL
IKRSYAPFS
Run BLAST on NCBI

transcript from alignment at scaffold_109:126358..128048-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046390 ID=TCONS_00046390|Name=TCONS_00046390|organism=Clytia hemisphaerica|type=transcript|length=1691bp|location=Sequence derived from alignment at scaffold_109:126358..128048- (Clytia hemisphaerica)
TTAGAGAAGACGCACTTTACAACTCCACATTGAATCAAGCTCAATTGACG AATATTAAGGTTAAATCTAAAGACGATCAGCAATAAAAATTGAAAAATGC TAAATATGCGAGTGATCAATCTGGGGACAATTGGGGTAATTATTTTATGT GCTCTGATCAACATCTCTGGTTTGGTTGGTACTTCATGGATGGTGAATGG GCAGATTCATGAAGGTCTGTGGAAGCATTACGACGACGGGGAAAATTCTA CACAAGATATTGATGGAAGAGGTGAGAAAAATAATGCCGGGCTATCTTCC TTCCATCAATTTATCAAACTCGAACCCAGTCCCTTAGTTTATTTTCTTAT GATTCTGATCGCGCTCACGAAAAAGATTGTATCGTGTCCATCACTATACG ATACGAGAGTGGGTACGGTCTGGGCGACCATCAGTTACCGTTGATAAAAT CTGGGATACAAAAGGGGTGGTGTTAAGTCTGCCCTACCCAGCTTAGAAAC TGTTCATCTAACGTTTCCAGACCATCTAAAAAGAGCGACAAATAACTATA ATCGACAAAAAGAACGACAAACCCTAACACCAACTATCAAAGAACGTCAC ATTTTGGGGTAACGTTAAGGTATCGGTAAAATACTGATTTAGACGTACGT TATGAAATACATAACATGAGAACATGAGAAAAGCATGTCAAAATAATTCA AATGACAAACTCAGCCTTGCAACATATCCTCCTCTTTTTCTACAACTATT TTCTAAACTACTCTTCAAAGATATTCACAATATATATGTTGTGGAGCAGT GAATTTATTTTCCGATTATGGTGGCAGAAAGTTAGTCAATTCTTATTTCC TTCAATTTTCTAGATGCACTCAAAGCTACAAAGACGCTATTGATTATGGC TTGTTTTACACTAGCGATTTCCTGTGCGTATTGGTCCTTAATTTCACTCG CAAAGGATATGAATGCAAAAATATTGGCTGCTATGCTACTTGCAACAAGT AAGAGTCTTTTAGTTTCTTGCATACCGTACTTACCTAAAACTATCCGAAA GTTCCCTAGACGTAAGCAATTAGATAAAATCGTATCAGCTGAAATGAAAA TTTCCGAGTATTTCGAGATAGACGAACAGAGCATAGTCAACTAAAAAAGA TTTTACAAGGGAACGCTTTTGATTGTTTTAGGTAAGCACGGTAGCTGTTT GGTATAATAAATGATGGCATTCTTAGAGCTTTTTACTGGCTATTTCGTTT TTTGTTTTTTTTTATCGAAAATATTAAAAAATATCATCATAATTAGACTG TTGTGATAAATAAATTCTCGCAATTTGAGATTCAATTTTAGCAACCTTGG GATGTACCAATGAATGATAAAAGTCAAATTATTATCTTTTCATAGGTTTG ATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAGCCAATTTCTCGGACA ACGTCTGGAATATCACTTTGGATGGTCGTATATTATTGTTTGGTGCTCAA CGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTAATCAAAAGAAGTTAT GCACCTTTCAGCTGAATTTTCAAAGTAAATTAAGCTAGTCTTGTAATAGG GTTTATTTGAAAAACCGTTAAACTATTCTTGGTTGTTGTAGACCGAATTA TTATTTTACTTTGTGAATTTGTATAGCTATGCAAAGAAAAC

Coding sequence (CDS) from alignment at scaffold_109:126358..128048-

>TCONS_00046390 ID=TCONS_00046390|Name=TCONS_00046390|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_109:126358..128048- (Clytia hemisphaerica)
GTTTGATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAGCCAATTTCTC
GGACAACGTCTGGAATATCACTTTGGATGGTCGTATATTATTGTTTGGTG
CTCAACGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTAATCAAAAGAA
GTTATGCACCTTTCAGCTGAATGCACTCAAAGCTACAAAGACGCTATTGA
TTATGGCTTGTTTTACACTAGCGATTTCCTGTGCGTATTGGTCCTTAATT
TCACTCGCAAAGGATATGAATGCAAAAATATTGGCTGCTATGCTACTTGC
AACAAATGCTAAATATGCGAGTGATCAATCTGGGGACAATTGGGGTAATT
ATTTTATGTGCTCTGATCAACATCTCTGGTTTGGTTGGTACTTCATGGAT
GGTGAATGGGCAGATTCATGAAGGTCTGTGGAAGCATTACGACGACGGGG
AAAATTCTACACAAGATATTGATGGAAGAGGTTTGATGCAAGTGATAGCG
TTGTCCGTTTACGCCAATAGCCAATTTCTCGGACAACGTCTGGAATATCA
CTTTGGATGGTCGTATATTATTGTTTGGTGCTCAACGGTTTTAATATTCG
TTCCCGCTGGATTGTGTTTAATCAAAAGAAGTTATGCACCTTTCAGCTGA
ATGCACTCAAAGCTACAAAGACGCTATTGATTATGGCTTGTTTTACACTA
GCGATTTCCTGTGCGTATTGGTCCTTAATTTCACTCGCAAAGGATATGAA
TGCAAAAATATTGGCTGCTATGCTACTTGCAACAAATGCTAAATATGCGA
GTGATCAATCTGGGGACAATTGGGGTAATTATTTTATGTGCTCTGATCAA
CATCTCTGGTTTGGTTGGTACTTCATGGATGGTGAATGGGCAGATTCATG
AAGGTCTGTGGAAGCATTACGACGACGGGGAAAATTCTACACAAGATATT
GATGGAAGAGGTTTGATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAG
CCAATTTCTCGGACAACGTCTGGAATATCACTTTGGATGGTCGTATATTA
TTGTTTGGTGCTCAACGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTA
ATCAAAAGAAGTTATGCACCTTTCAGCTGAATGCACTCAAAGCTACAAAG
ACGCTATTGATTATGGCTTGTTTTACACTAGCGATTTCCTGTGCGTATTG
GTCCTTAATTTCACTCGCAAAGGATATGAATGCAAAAATATTGGCTGCTA
TGCTACTTGCAACAAATGCTAAATATGCGAGTGATCAATCTGGGGACAAT
TGGGGTAATTATTTTATGTGCTCTGATCAACATCTCTGGTTTGGTTGGTA
CTTCATGGATGGTGAATGGGCAGATTCATGAAGGTCTGTGGAAGCATTAC
GACGACGGGGAAAATTCTACACAAGATATTGATGGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029605XLOC_029605Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046390-proteinTCONS_00046390-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046390-exon-scaffold_109-1575043694:127778..128048TCONS_00046390-exon-scaffold_109-1575043694:127778..128048Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1575043694:127051..127185TCONS_00046390-exon-scaffold_109-1575043694:127051..127185Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1575043694:126358..126653TCONS_00046390-exon-scaffold_109-1575043694:126358..126653Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1510915933:127778..128048TCONS_00046390-exon-scaffold_109-1510915933:127778..128048Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1510915933:127051..127185TCONS_00046390-exon-scaffold_109-1510915933:127051..127185Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1510915933:126358..126653TCONS_00046390-exon-scaffold_109-1510915933:126358..126653Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1491911889:127778..128048TCONS_00046390-exon-scaffold_109-1491911889:127778..128048Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1491911889:127051..127185TCONS_00046390-exon-scaffold_109-1491911889:127051..127185Clytia hemisphaericaexon
TCONS_00046390-exon-scaffold_109-1491911889:126358..126653TCONS_00046390-exon-scaffold_109-1491911889:126358..126653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:126358..128048 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.215889 0.14035 0.24444 0.0797156 0.48523 0.0766871 0.370079 0 0.242567 0.375573 0.145816 0.0479269 2.05799 1.3917 0.0817259 0.0438522 0.0540223 0.110742 0.611986 0.800499 0.139156 0 0.0825113 0 0.0772635 0.137912 0 0.210618 0.0798733 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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