TCONS_00046165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046165
Unique NameTCONS_00046165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1003

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046165 ID=TCONS_00046165|Name=TCONS_00046165|organism=Clytia hemisphaerica|type=transcript|length=1003bp
GGGATGAGGAAAAAAGTGCCTTACTTTTTACTTCCTATCACATTTGATCT
TGGTGCTGGTACACTTTCTGTTAATTGCGTCATCTGAGTTTTATTTTATG
CGATTTCACTTGAACTTAGTTATCAATAGCTGATGCAAAAACTGATGTAA
AGAAACTACGACTTGTGTCTCGATTGACCAAAATAAGATACTCTCAACTA
CAAATTTATACATAAAACTCGTTAACAATGATTTTGATGCGACAGTGCTT
CTTGTTGATATTCTCCATCCATTCATTCTCATGGACATCGCCATTAACTC
ATTTGAAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAACACGGAT
GATTTGAGTCTTCAGACACAATCAAACCAAGGGAAAATTTCAGACGTGAT
GAGCCCCAGACCGACATTAACAACGAGAACAACGATATCAGCATACAAGA
CAACTTTAAAAACAACAACGACGACCACAAAGACAAAATACCAAAGACgt
tcaaaatataataaacaaaaacatcaacGTTTCGTCATCATCTCTAACCG
AAAAGCGCCACCATGTTGCGTGGCCGGAACGAAGGCAGGATCCTGGGGAT
ATTTATGCATGGCTCACGAACGTTTTGTCACCGAACGCTTCTTCTTACCG
CATCCTTTAAAAGTGAAATTTACACGGCGCCGATCGTACGTCCAATTAGC
CTTAGCTAAGCTAATACAACAATGTTCTAGACACCCGGTCACGGCAAAAC
AGTATGAGAAATGTTGCGATAACGCACAACATAGACTTTATCAAAGAATG
GGTTTAGACTCTTAGTTTGTGACGTTTTTTTtcgattatttttatttatt
tataatttgTAGTTGTAAATTTGTATATAGCAAAAAGTAGGGTCTACCCA
TTCGGTATAGAAATAAAGTTCTCCGTTCTCCTAATAAATATACGCATAAA
ATTCTATGATTTTGAGTTTGATTGAATTATCTACATAAATATGAGCAAAC
cag
Run BLAST on NCBI

protein sequence of TCONS_00046165-protein

>TCONS_00046165-protein ID=TCONS_00046165-protein|Name=TCONS_00046165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MILMRQCFLLIFSIHSFSWTSPLTHLKKGLQAGDENALNTDDLSLQTQSN
QGKISDVMSPRPTLTTRTTISAYKTTLKTTTTTTKTKYQRRSKYNKQKHQ
RFVIISNRKAPPCCVAGTKAGSWGYLCMAHERFVTERFFLPHPLKVKFTR
RRSYVQLALAKLIQQCSRHPVTAKQYEKCCDNAQHRLYQRMGLDS
Run BLAST on NCBI

transcript from alignment at scaffold_106:252142..253439-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046165 ID=TCONS_00046165|Name=TCONS_00046165|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at scaffold_106:252142..253439- (Clytia hemisphaerica)
GGGATGAGGAAAAAAGTGCCTTACTTTTTACTTCCTATCACATTTGATCT TGGTGCTGGTACACTTTCTGTTAATTGCGTCATCTGAGTTTTATTTTATG CGATTTCACTTGAACTTAGTTATCAATAGCTGATGCAAAAACTGATGTAA AGAAACTACGACTTGTGTCTCGATTGACCAAAATAAGATACTCTCAACTA CAAATTTATACATAAAACTCGTTAACAATGATTTTGATGCGACAGTGCTT CTTGTTGATATTCTCCATCCATTCATTCTCATGGACATCGCCATTAACTC ATTTGAAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAACACGGAT GATTTGAGTCTTCAGACACAATCAAACCAAGGTATGCACTATTGTTTACT GTTTTATTATCATTTACTACAATATTTTTGAATCCGCCATTCTCAAACGT TTAACAAGATTGACTTTAGGGNTCATTTACTACAATATTTTTGAATCCGC CATTCTCAAACGTTTAACAAAATTGACTTTACTATACTAGGTTATTCATA ATGTCAAGATTTTTTCTTTAACAATTATTTTCAAAAATCTTTCATACAAA TATTCTTTTGATTCCTTGTTTCTGGGATCCTTTCAGACAGTGAACATGAA TAGAATTATCCTTGTCGTATATTTAGGGAAAATTTCAGACGTGATGAGCC CCAGACCGACATTAACAACGAGAACAACGATATCAGCATACAAGACAACT TTAAAAACAACAACGACGACCACAAAGACAAAATACCAAAGACGTTCAAA ATATAATAAACAAAAACATCAACGTTTCGTCATCATCTCTAACCGAAAAG CGCCACCATGTTGCGTGGCCGGAACGAAGGCAGGATCCTGGGGATATTTA TGCATGGCTCACGAACGTTTTGTCACCGAACGCTTCTTCTTACCGCATCC TTTAAAAGTGAAATTTACACGGCGCCGATCGTACGTCCAATTAGCCTTAG CTAAGCTAATACAACAATGTTCTAGACACCCGGTCACGGCAAAACAGTAT GAGAAATGTTGCGATAACGCACAACATAGACTTTATCAAAGAATGGGTTT AGACTCTTAGTTTGTGACGTTTTTTTTCGATTATTTTTATTTATTTATAA TTTGTAGTTGTAAATTTGTATATAGCAAAAAGTAGGGTCTACCCATTCGG TATAGAAATAAAGTTCTCCGTTCTCCTAATAAATATACGCATAAAATTCT ATGATTTTGAGTTTGATTGAATTATCTACATAAATATGAGCAAACCAG

Coding sequence (CDS) from alignment at scaffold_106:252142..253439-

>TCONS_00046165 ID=TCONS_00046165|Name=TCONS_00046165|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_106:252142..253439- (Clytia hemisphaerica)
GGAAAATTTCAGACGTGATGAGCCCCAGACCGACATTAACAACGAGAACA
ACGATATCAGCATACAAGACAACTTTAAAAACAACAACGACGACCACAAA
GACAAAATACCAAAGACGTTCAAAATATAATAAACAAAAACATCAACGTT
TCGTCATCATCTCTAACCGAAAAGCGCCACCATGTTGCGTGGCCGGAACG
AAGGCAGGATCCTGGGGATATTTATGCATGGCTCACGAACGTTTTGTCAC
CGAACGCTTCTTCTTACCGCATCCTTTAAAAGTGAAATTTACACGGCGCC
GATCGTACGTCCAATTAGCCTTAGCTAAGCTAATACAACAATGTTCTAGA
CACCCGGTCACGGCAAAACAGTATGAGAAATGTTGCGATAACGCACAACA
TAGACTTTATCAAAGAATGGGTTTAGACTCTTAGATGATTTTGATGCGAC
AGTGCTTCTTGTTGATATTCTCCATCCATTCATTCTCATGGACATCGCCA
TTAACTCATTTGAAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAA
CACGGATGATTTGAGTCTTCAGACACAATCAAACCAAGGGAAAATTTCAG
ACGTGATGAGCCCCAGACCGACATTAACAACGAGAACAACGATATCAGCA
TACAAGACAACTTTAAAAACAACAACGACGACCACAAAGACAAAATACCA
AAGACGTTCAAAATATAATAAACAAAAACATCAACGTTTCGTCATCATCT
CTAACCGAAAAGCGCCACCATGTTGCGTGGCCGGAACGAAGGCAGGATCC
TGGGGATATTTATGCATGGCTCACGAACGTTTTGTCACCGAACGCTTCTT
CTTACCGCATCCTTTAAAAGTGAAATTTACACGGCGCCGATCGTACGTCC
AATTAGCCTTAGCTAAGCTAATACAACAATGTTCTAGACACCCGGTCACG
GCAAAACAGTATGAGAAATGTTGCGATAACGCACAACATAGACTTTATCA
AAGAATGGGTTTAGACTCTTAGATGATTTTGATGCGACAGTGCTTCTTGT
TGATATTCTCCATCCATTCATTCTCATGGACATCGCCATTAACTCATTTG
AAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAACACGGATGATTT
GAGTCTTCAGACACAATCAAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029489XLOC_029489Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046165-proteinTCONS_00046165-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046165-exon-scaffold_106-1575043694:253059..253439TCONS_00046165-exon-scaffold_106-1575043694:253059..253439Clytia hemisphaericaexon
TCONS_00046165-exon-scaffold_106-1575043694:252142..252763TCONS_00046165-exon-scaffold_106-1575043694:252142..252763Clytia hemisphaericaexon
TCONS_00046165-exon-scaffold_106-1510915933:253059..253439TCONS_00046165-exon-scaffold_106-1510915933:253059..253439Clytia hemisphaericaexon
TCONS_00046165-exon-scaffold_106-1510915933:252142..252763TCONS_00046165-exon-scaffold_106-1510915933:252142..252763Clytia hemisphaericaexon
TCONS_00046165-exon-scaffold_106-1491911889:253059..253439TCONS_00046165-exon-scaffold_106-1491911889:253059..253439Clytia hemisphaericaexon
TCONS_00046165-exon-scaffold_106-1491911889:252142..252763TCONS_00046165-exon-scaffold_106-1491911889:252142..252763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:252142..253439 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155505 0.479295 0.354141 0.197984 0.361539 0.571387 1.37871 1.77475 0.866017 0.513031 8.39588 0.833228 7.65676 6.4736 5.54166 6.63288 6.2513 14.0528 0.332488 1.34199 1.05061 1.35276 3.89362 2.98121 2.06286 0.214076 3.82831 4.85219 137.223 167.876
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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