TCONS_00046152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046152
Unique NameTCONS_00046152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046152 ID=TCONS_00046152|Name=TCONS_00046152|organism=Clytia hemisphaerica|type=transcript|length=585bp
gaaaaacaGAAAGGAATGCTGAATGTCTCAACAACGTACTCTAATTTCAA
ATTGATAGTATAATGGATAATGATGAACCTGAAGATATTGCCCTTGTTGA
AAATGCTGAGAATATTGCTGGACTATTGACCCTTTGTCAGGAGGCAGCAG
CACTCGAAATAGGCTTTCAAACGCAAATTAAACAATGCATTGAACTGAAA
GGCCCTAGCTCACTTTTGACTGGCGAGAAAACTCTTCTTTTGTTGGCATC
ATACCCCAAATGTACAGATGGCATTCTTTATGGCTTGCCTTTGGTTTTGG
AAATGAATGGTGAAAAATTCTTGTACCTCAGGTACTGCGAAACTGGGATC
TACAGAGGATTTTTCAAACAAAATCTTCGTGCATTGATAGGTGATTTTAT
TAAGGAGAATGATATTACCAAGGTTTTTCCTGTTCGAATTTTTAATGATT
GGGACATCAatgcaaaaatatttcaaagatcGGAATCAAAGAAAGGACAC
AGTGAAGAAAACAACTCGCAAGTATTCTCAAAGAATACAGTCAAAAAAGG
TGGCTGTCTGAACAAAACGTTTCCTACCGCACTNN
Run BLAST on NCBI

protein sequence of TCONS_00046152-protein

>TCONS_00046152-protein ID=TCONS_00046152-protein|Name=TCONS_00046152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MDNDEPEDIALVENAENIAGLLTLCQEAAALEIGFQTQIKQCIELKGPSS
LLTGEKTLLLLASYPKCTDGILYGLPLVLEMNGEKFLYLRYCETGIYRGF
FKQNLRALIGDFIKENDITKVFPVRIFNDWDINAKIFQRSESKKGHSEEN
NSQVFSKNTVKKGGCLNKTFPTAX
Run BLAST on NCBI

transcript from alignment at scaffold_106:34198..36348-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046152 ID=TCONS_00046152|Name=TCONS_00046152|organism=Clytia hemisphaerica|type=transcript|length=2151bp|location=Sequence derived from alignment at scaffold_106:34198..36348- (Clytia hemisphaerica)
GAAAAACAGAAAGGAATGCTGAATGTCTCAACAACGTACTCTAATTTCAA
ATTGATAGTATAATGGGTAAGTTAAATTTCCTAGAGTACCTTATACATAA
AGGGTTAAATTGTAGGAGGGGCAATTTTGTTTTTTTATTTTGTTTCATTT
TTTCTTTGACATGCTCTTGGCTCTTTTTGTTCGACTGATTTTTTTGATAG
ATGTTCATGATTAAATGGAACTACCTGTGAATTTGTAAGTTTTTGTATTA
TGGTTATTATTACAGTAAAAGTTTTAGCCTAGATTTTTGAAACAGAGTAC
TCTACTTAACAACTTAAGTCAAAGTTCTTTTGGTTCTTTTTCTGTTGAAT
ATTGCATTTTCTGTCTAATATTGCATTTTTCTAGTTTTACCTAGCTTTGA
AGAATTTATTACAAGTCAGTAATGAGAATTATATAAGAATATTGATGTGA
AAAAGTAGTCAATATATAGAATAATTAATTCATAATAGTTCCCAATTATT
AATTTAAATTTAAATTCATTTATTAAAGAAAGGTCTCTCAAGAATGACCC
TGTAATATATTTATAGGCAAAAAATCTCAAGCCATCTTCTTTAGACCTTT
AGTTCATAAATATTTTTCTTATTTTTTCCCACTATCCATTTAATTTCTAT
TTCTAATCATTTATATGCATAAATTTCCACTGAAAAGTAACAATATGAAT
AATTTTAAGAACAGAATCAATCAAATTAAACATGTGAAAGTTTATTCAAT
GAAAATAACAAACATGAAAATAAGTTACTAAGTAATTTTGATTTTAGGAT
TTGTTTTCAATTGACTGGACATTTGTTTGACTCATAACTGTGACAAAACA
ATGACAGACAGACTTTACAACGACAATAACAGTAACAATAACCAAAGAAG
TGGCATCATAAATCAGGGAATTATTTAGTTTCAATTTTCTTACTAAATTT
AGATAGCCATGTTTGGATTTGCTTTGATAATTTGTAAGATCCTCGAACGT
TTTAAGGCAAATAAATTGATCCTGCACATTTGAGGAGTATCACAACCATT
TTATTTGAGGAAAATCTTTATAAAAAATTGAGTGTAAAATTGTTACTATA
TTTGACATAACATTTATTCTTTTCGTCACCACTTCAACATCTTTTCTCTA
CACTAGATAATGATGAACCTGAAGATATTGCCCTTGTTGAAAATGCTGAG
AATATTGCTGGACTATTGACCCTTTGTCAGGAGGCAGCAGCACTCGAAAT
AGGCTTTCAAACGCAAATTAAACAATGCATTGAACTGAAAGGCCCTAGCT
CACTTTTGACTGGCGAGAAAACTCTTCTTTTGTTGGCATCATACCCCAAA
TGTACAGATGGCATTCTTTATGGCTTGCCTTTGGTTTTGGAAATGAATGG
TGAAAAATTCTTGTACCTCAGGTAATTGTTTTGATACAAAAAAGAGATGA
AAGTATCTTATCAATAAACTGTAGTATATATCTTAAAAACTTGTAATGTT
TTTAATTCCTTAGGTACTGCGAAACTGGGATCTACAGAGGATTTTTCAAA
CAAAATCTTCGTGCATTGATAGGTGATTTTATTAAGGAGAATGATATTAC
CAAGGTTTTTCCTGTTCGAATTTTTAATGATTGGGACATCAATGCAAAAA
TATTTCAAAGATCGGAATCAAAGAAAGGTAAATTATAACTGTCTAAAAAT
TACCTTAAGTGTGTCTCATAGTAAACAAAATAGCATTAGTTTTCAAAACT
GTTTTTTCAGTCAAAAGATGAATAAGATATTTTCTTATTCGAGTCTAAAA
ATTAGAGAAAGACAATAAAATCTTTTTTTCAAGGAACTTGTTCAATATAT
TTTGCTGTAATACTGAATAAAACTATTTGAATAATGTTCTACTGTGATAA
TTTTCTAGGATCAAAGAATCACTCCGGTTTGATGGAAATAATAATAAAAT
TCATTCAGAATTCGATTTATCATTTCTCACGATCACAATTTTTAATGCAA
ATTCTATTTATTACCTTTATATCAGAACATTTCCTTTTTTCAATGTATTT
TCTCATTTAAGGACACAGTGAAGAAAACAACTCGCAAGTATTCTCAAAGA
ATACAGTCAAAAAAGGTGGCTGTCTGAACAAAACGTTTCCTACCGCACTN
N

Coding sequence (CDS) from alignment at scaffold_106:34198..36348-

>TCONS_00046152 ID=TCONS_00046152|Name=TCONS_00046152|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_106:34198..36348- (Clytia hemisphaerica)
GACACAGTGAAGAAAACAACTCGCAAGTATTCTCAAAGAATACAGTCAAA
AAAGGTGGCTGTCTGAACAAAACGTTTCCTACCGCACTNGTACTGCGAAA
CTGGGATCTACAGAGGATTTTTCAAACAAAATCTTCGTGCATTGATAGGT
GATTTTATTAAGGAGAATGATATTACCAAGGTTTTTCCTGTTCGAATTTT
TAATGATTGGGACATCAATGCAAAAATATTTCAAAGATCGGAATCAAAGA
AAGATAATGATGAACCTGAAGATATTGCCCTTGTTGAAAATGCTGAGAAT
ATTGCTGGACTATTGACCCTTTGTCAGGAGGCAGCAGCACTCGAAATAGG
CTTTCAAACGCAAATTAAACAATGCATTGAACTGAAAGGCCCTAGCTCAC
TTTTGACTGGCGAGAAAACTCTTCTTTTGTTGGCATCATACCCCAAATGT
ACAGATGGCATTCTTTATGGCTTGCCTTTGGTTTTGGAAATGAATGGTGA
AAAATTCTTGTACCTCAGATGGGACACAGTGAAGAAAACAACTCGCAAGT
ATTCTCAAAGAATACAGTCAAAAAAGGTGGCTGTCTGAACAAAACGTTTC
CTACCGCACTNGTACTGCGAAACTGGGATCTACAGAGGATTTTTCAAACA
AAATCTTCGTGCATTGATAGGTGATTTTATTAAGGAGAATGATATTACCA
AGGTTTTTCCTGTTCGAATTTTTAATGATTGGGACATCAATGCAAAAATA
TTTCAAAGATCGGAATCAAAGAAAGATAATGATGAACCTGAAGATATTGC
CCTTGTTGAAAATGCTGAGAATATTGCTGGACTATTGACCCTTTGTCAGG
AGGCAGCAGCACTCGAAATAGGCTTTCAAACGCAAATTAAACAATGCATT
GAACTGAAAGGCCCTAGCTCACTTTTGACTGGCGAGAAAACTCTTCTTTT
GTTGGCATCATACCCCAAATGTACAGATGGCATTCTTTATGGCTTGCCTT
TGGTTTTGGAAATGAATGGTGAAAAATTCTTGTACCTCAGATGGGACACA
GTGAAGAAAACAACTCGCAAGTATTCTCAAAGAATACAGTCAAAAAAGGT
GGCTGTCTGAACAAAACGTTTCCTACCGCACTNGTACTGCGAAACTGGGA
TCTACAGAGGATTTTTCAAACAAAATCTTCGTGCATTGATAGGTGATTTT
ATTAAGGAGAATGATATTACCAAGGTTTTTCCTGTTCGAATTTTTAATGA
TTGGGACATCAATGCAAAAATATTTCAAAGATCGGAATCAAAGAAAGATA
ATGATGAACCTGAAGATATTGCCCTTGTTGAAAATGCTGAGAATATTGCT
GGACTATTGACCCTTTGTCAGGAGGCAGCAGCACTCGAAATAGGCTTTCA
AACGCAAATTAAACAATGCATTGAACTGAAAGGCCCTAGCTCACTTTTGA
CTGGCGAGAAAACTCTTCTTTTGTTGGCATCATACCCCAAATGTACAGAT
GGCATTCTTTATGGCTTGCCTTTGGTTTTGGAAATGAATGGTGAAAAATT
CTTGTACCTCAGATGGGACACAGTGAAGAAAACAACTCGCAAGTATTCTC
AAAGAATACAGTCAAAAAAGGTGGCTGTCTGAACAAAACGTTTCCTACCG
CACTNGTACTGCGAAACTGGGATCTACAGAGGATTTTTCAAACAAAATCT
TCGTGCATTGATAGGTGATTTTATTAAGGAGAATGATATTACCAAGGTTT
TTCCTGTTCGAATTTTTAATGATTGGGACATCAATGCAAAAATATTTCAA
AGATCGGAATCAAAGAAAGATAATGATGAACCTGAAGATATTGCCCTTGT
TGAAAATGCTGAGAATATTGCTGGACTATTGACCCTTTGTCAGGAGGCAG
CAGCACTCGAAATAGGCTTTCAAACGCAAATTAAACAATGCATTGAACTG
AAAGGCCCTAGCTCACTTTTGACTGGCGAGAAAACTCTTCTTTTGTTGGC
ATCATACCCCAAATGTACAGATGGCATTCTTTATGGCTTGCCTTTGGTTT
TGGAAATGAATGGTGAAAAATTCTTGTACCTCAGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029482XLOC_029482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046152-exon-scaffold_106-1575043694:36283..36348TCONS_00046152-exon-scaffold_106-1575043694:36283..36348Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1575043694:34928..35192TCONS_00046152-exon-scaffold_106-1575043694:34928..35192Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1575043694:34672..34835TCONS_00046152-exon-scaffold_106-1575043694:34672..34835Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1575043694:34198..34287TCONS_00046152-exon-scaffold_106-1575043694:34198..34287Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1510915933:36283..36348TCONS_00046152-exon-scaffold_106-1510915933:36283..36348Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1510915933:34928..35192TCONS_00046152-exon-scaffold_106-1510915933:34928..35192Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1510915933:34672..34835TCONS_00046152-exon-scaffold_106-1510915933:34672..34835Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1510915933:34198..34287TCONS_00046152-exon-scaffold_106-1510915933:34198..34287Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1491911889:36283..36348TCONS_00046152-exon-scaffold_106-1491911889:36283..36348Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1491911889:34928..35192TCONS_00046152-exon-scaffold_106-1491911889:34928..35192Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1491911889:34672..34835TCONS_00046152-exon-scaffold_106-1491911889:34672..34835Clytia hemisphaericaexon
TCONS_00046152-exon-scaffold_106-1491911889:34198..34287TCONS_00046152-exon-scaffold_106-1491911889:34198..34287Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046152-proteinTCONS_00046152-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:34198..36348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.747719	0	0	4.50299	1.59592	4.89967	7.91495	6.22245	4.04245	5.64492	9.2943	4.29554	5.48448	1.5411	3.02476	3.28852	0.907624	1.92716	2.18118	3.77916	2.60788	2.04061	2.30565	6.42052	7.66448	0.774002	0.853202	0.215369	1.15964
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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