TCONS_00046114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046114
Unique NameTCONS_00046114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046114 ID=TCONS_00046114|Name=TCONS_00046114|organism=Clytia hemisphaerica|type=transcript|length=681bp
AACTGAATTGATATCATGCAAACAAAATCCTTTCCAATCACAAGCTGGTA
AAGAGTACATTGTATTACCTTACTTATACCTTGTTTCAAAAGGGGTCTAG
TTCTCAAaggtgaaagaaaaaacattaaacaaaataaactaTGTCCTCtt
attcaaaatattattcAACAAAGCTAAATTTTTAAATCAGTGGCACTTTC
TGAACCATTTACAAAATTcacgaatttaagaaaaataaattatttttcaa
aactgaatTTTGGAAATTCCTCCATGTTTCCTCCGCCATATCTTCGCTCC
AAGTTTTCCATCCCAAACTTGTGTTTTGCTTCGATTTCTGTATTGCTATC
AAAAAGTTGTCCTTCTTGCAATTTAGAAGCATTCTTCTTATACtcgttca
atttttccaaaaacaatttttggatAGGGTCACTTGTTTGTGAAGCCTTG
GCAGCTGCAACCGAACTAACACCAATGTTTCgtcgtaaaattttgctgat
ggTTGCCAAACCAGTTCTTGCTTGAGGTAAAGccatttttatgtttattt
agaTTTAGATCACTGAAAAAGACCAAGATTTTGCTACTTTTAAATAGACT
GGATAACTGTTAATCaacataatatttttggaatcaATGGTATTCGAAAC
TACTAAATCTTGATGATAATAGTGGAATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_105:496826..497506

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046114 ID=TCONS_00046114|Name=TCONS_00046114|organism=Clytia hemisphaerica|type=transcript|length=681bp|location=Sequence derived from alignment at scaffold_105:496826..497506 (Clytia hemisphaerica)
CAAATTCCACTATTATCATCAAGATTTAGTAGTTTCGAATACCATtgatt
ccaaaaatattatgttGATTAACAGTTATCCAGTCTATTTAAAAGTAGCA
AAATCTTGGTCTTTTTCAGTGATCTAAAtctaaataaacataaaaatggC
TTTACCTCAAGCAAGAACTGGTTTGGCAAccatcagcaaaattttacgac
GAAACATTGGTGTTAGTTCGGTTGCAGCTGCCAAGGCTTCACAAACAAGT
GACCCTatccaaaaattgtttttggaaaaattgaacgaGTATAAGAAGAA
TGCTTCTAAATTGCAAGAAGGACAACTTTTTGATAGCAATACAGAAATCG
AAGCAAAACACAAGTTTGGGATGGAAAACTTGGAGCGAAGATATGGCGGA
GGAAACATGGAGGAATTTCCAAAattcagttttgaaaaataatttatttt
tcttaaattcgtgAATTTTGTAAATGGTTCAGAAAGTGCCACTGATTTAA
AAATTTAGCTTTGTTgaataatattttgaataaGAGGACAtagtttattt
tgtttaatgttttttctttcacctTTGAGAACTAGACCCCTTTTGAAACA
AGGTATAAGTAAGGTAATACAATGTACTCTTTACCAGCTTGTGATTGGAA
AGGATTTTGTTTGCATGATATCAATTCAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029458XLOC_029458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046114-exon-scaffold_105-1491911889:496826..497506TCONS_00046114-exon-scaffold_105-1491911889:496826..497506Clytia hemisphaericaexon
TCONS_00046114-exon-scaffold_105-1510915933:496826..497506TCONS_00046114-exon-scaffold_105-1510915933:496826..497506Clytia hemisphaericaexon
TCONS_00046114-exon-scaffold_105-1575043694:496826..497506TCONS_00046114-exon-scaffold_105-1575043694:496826..497506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:496826..497506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
264.354	255.588	368.081	386.004	237.293	200.087	292.904	303.344	459.467	358.939	399.265	490.631	393.419	401.976	339.271	348.013	503.601	537.516	191.524	171.487	544.034	498.96	301.294	310.588	444.421	422.779	363.822	317.554	234.847	206.717
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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