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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045982 ID=TCONS_00045982|Name=TCONS_00045982|organism=Clytia hemisphaerica|type=transcript|length=1598bp
CCGATATACAGAATACTAGACAGCTAGAGGGGTGTCATTATTTTGTGTCT
TTGTTAGTGTTTTCTTGAGTTTCTGGTACAAATTCATTCTTCTATTTACT
TTATATTAGAATTTTCTCAATTAGAATACTCAGAACCTCTTTCTTCTTAA
TTGTTTATGGAATTTATTCGTCGAATGTTAGGTATGGTCGAGTATAAGCC
ATACAAAGTTCAAGATTGTTTTGGGAAAAAGCGTGTTGGTCTAACAGCAT
CCAACTTCAAAGacctcaaaaacaaagcaaaattaAAGTTAAATTTGGAG
AACGTAGATTCAGTATATTTAGAGGATGGAACTGAAGTTGAGGATGACTC
TTATCTTCTTTCTTTACCGACTCAAACTGTTCTTATTGTTTTACAAATTG
GTGAAGTTTGGGAAGGGTACATCAGTTACTTGAAGATGGCAAGCAACAAG
ATCATCGAAAACGTTGCCATGAGAACGCTCACAATCAACAAAATTCAAGA
ACTTCTCTTGGATCCAGAATCTCCAGAACTCTCCCTCATCATGGATTTCG
TCCATACTATTCACTCCAACCTCGATGCAGAACATATTGAGGATGATCCA
GACTGGTTTGAAGGTGTTGCATCCaattacaaaaacaaaacacacgTTAT
GAGAGATTCTGCTAAAAATCGCATTCGTGGATATTTGGCAAAAACTAAAG
ATTTCGCAAGCTCCACTaaaatgccGGGAAAGAAAGTTCGAGTGGAATTC
ACCAACATCATCGATCAATTTCAAAACGAATTAAAAGAGAGAGGATATTA
CGGGCAGATATTCGATCGGTTCGCTTCTGAAAAAgaaagtgacgtcatca
aattatgcGATGATAAGGGCTGGTTTACATGTCAAGGTGCTTTTGATATG
AAGGATTGTGAGCGAGTGCATCGAATCAACCCTTATGCTTCGAAAGATGC
ACGTGTCTTGTTTAGCACGTGGAACCTCGATCACAGGATTGAAAAATCGC
GCGAGATTTTACCACGGCTGTTGGAATCGATCATCGAATGTCCGAAGACT
AAACAGGTCAACTGGAAATATTTCTTTGAACTTCTGTTTACTGTGCAGAA
CTTGAAGCTTGTTGATATACGTTGTCATAAGAAGGAAAAACACACGGCGT
GTGTTGTCGACCGCCGTAAAGTTTACGCATTACGTAAGAAATAAGTGAAT
GTGATTTCTGTTGATTTAGGATGTATATGTAGTTCCTCGTCTGCTAGAGA
GTGCAAGAAAGTAATTTTTACGAGAACAAGtgtattttcaaataattatt
ttatatcTGCATGCATTTTCCTTTGCAGTGACCTTATGATTACATTTCCC
CCAACTTTTATAACATATTATCTTTCTCGTAAAATTGCTTACTACAAAAA
CCATGCCATACATGATAAAAGGGGTTATATTAAAACAATATTCCTCTTTT
TTCATGTTATCATAAATCATCGCTTTGAAAGAGAAGATTATATTGTCGCT
ATAGAAACATGTTATAACACGCATGGCTAATTACAGCATATTACGTATTA
TTTATTCACGAAAACCTCTACACGGGAGAGTGATTTCTTTTGTTCGAG Run BLAST on NCBI transcript from alignment at scaffold_105:221279..235977+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045982 ID=TCONS_00045982|Name=TCONS_00045982|organism=Clytia hemisphaerica|type=transcript|length=14699bp|location=Sequence derived from alignment at scaffold_105:221279..235977+ (Clytia hemisphaerica)
CCGATATACAGAATACTAGACAGCTAGAGGGGTGTCATTATTTTGTGTCT
TTGTTAGTGTTTTCTTGAGTTTCTGGTACAAATTCATTCTTCTATTTACT
TTATATTAGAATTTTCTCAATTAGAATACTCAGAACCTCTTTCTTCTTAA
TTGTTTATGGAATTTATTCGTCGAATGTTAGGTATGGTCGAGTATAAGCC
ATACAAAGTTCAAGATTGTTTTGGGAAAAAGCGTGTTGGTCTAACAGCAT
CCAACTTCAAAGacctcaaaaacaaagcaaaattaAAGTTAAATTTGGAG
AACGTAGATTCAGTATATTTAGAGGATGGAACTGAAGTTGAGGATGACTC
TTATCTTCTTTCTTTACCGACTCAAACTGTTCTTATTGTTTTACAAATTG
GTGAAGTTTGGGAAGGGTGTAAGTATTTATACTTCCTTTATCAATAAGAA
ATCTTAGGTTActgtgaaaaagaatgcgggtattatattttgatttttcc
catgATAGATATAGTACCagctgatgcaagttaccggACTTCACAGtaaa
ggccaaaaaaaaaagtagtcttgtttccggaaatgcgggtgacgaaaaaa
aaactcacCCGGGCGgccgcaaaaaatttttttcttcacatttttagatt
tttcttacactcttgatttttttctctttctatttaataatataaacaaa
aagcAGTTGTTAGAGAACAAACAACGAACGAAAATAAAAGAGAAGAGGAA
ATCATTTATATTTACGATTGACGTCACAAATATTATACAATACTAGTATT
TAAGAACGTTCGTTCGTCTTTGCTGTATATTATTTACTCTGTTACAAAAC
TTTTGTGTTTTCTTGAGAAGACGTCTTGCTTTTTGAGCCTAGTTGTCTGA
AAtattcagtttgaaaaaaaatattttttttctgacagcacaaaaaaaaa
aaattattttttgcggccgggtgactttcaaaaataagttcacccggccg
atttccggaaacaagagtacttttttttttggcctaaGCCGGGTGGGAgc
caaatagaccttttgctaagCTGTaggatgttttgattttctggatgaat
tttagccaaaaaaatgttaaaaagggttttttgcaaacttttctTCTCTG
AAATACAAAACCTCACTGATTTCAAATActgttgttttgtataagattcc
cattgcCGCACTAAGACTCCTTTTGCCACTTTACTAGCAGAAAACACCAA
GACTTcaggtagttgaaaaataagctttGGAAAATTAAGTTAGGCAGTTT
CatgagtaaacacaagattctctgtacctttagaaacaaacccttttCTA
TCTCATGCTGCGGAAAGATTCCAGAGAAGTGACAATAATCTTAGTgtgga
aatgggaatcttataaaaaagaaattctgaTTTTCCATATCTCTTTTAAA
TCAAAAGCTGTAAACCCTTGCAATAGGTTCattcagtcagggaaatccct
caattgcagtagtaattttttactgcaattgcggtataaacgtcactttt
acatttttcatataccgtcaactgctccaacttgggacgagtggtcgcaa
catgggacttgttgatatctggcctgtatttttacttactgttaaatcac
tttgacaacaaatttgttttgatacttccacCAAGTTTGTCAATCACACT
TCTTCTGTTATTCATATATCACAAAAATAGATATGTCTAGAAAAACTGCA
TCTGACAAAAGTAATTAAAATTAACCATTTCACGTCATCTCTTTTAAAAA
TGTCTTGCTCCCTAGGGCTGAAAATACGACGCTagattttatggattttt
gtaGATATCTGTGTTGCAGagcgcgtgtgttccactacagatttttttca
tattttgatttagaagcctactcggtgcgaaagagaaatcgtgtattttt
taatacacagtttattaaactcaaatcaaatgactttggaggttcggtga
aatggtggtggaatggctATCCCATGTtgtgtcagatagtcccaagttgg
agcagttgacggtaccgcaattgcagtatatttaagaaacagaattcaag
attcaagagGAAAACAgacaatttttgtacataattgatcataCTAACAC
CAAAACCTCTCTAGGACATTACGAAAACtattttccagcttttccaaaaa
tagtaaCCCACATATAGCTTGTTTCaccatatttttaaattccGTAACGA
TTTTTTATGAACACGGTtgcattttttgatatttttatgtgtaaagaagg
taagtgtcaagagaaaagtttgctcgctgtttttgattTAATTCCCACGT
CTCAGATGCAATTAAAGTATAAGGCCCTAGGAATAAACACAAAAAAGGCA
GACTAAGGAGGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CACCCAAATCCAAAGAATAACATTAAAAGGAGGGTAAAGAAATTAATCTG
AGGAAATTATAGACACATAATGACATTAGGTAGGTTGCAAATAGTGATGT
AATAATTTTACCTTGGCCAAGTTAGAATTAAACTTTGAAATATCTTGGTC
AGAGATTTGAGATACCTAAGATAGCAATCCCTAGACCGTCTACCCACAAT
GTGTATCATTGAGTCAGACACACATGCGGAGAGGGCAGCGGAGGCTCCAC
CCATGCAAAAACTTAGGGTATTTAAACAGTGTTCAAGAGGAAGGAGCNNN
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NNNNNNNNNNTAACCGGCAGCCGAAATATACTATTTCATAGCCGCCTCGG
TGCGGTGGCGGGATGTACTTCATTCGACTTGGAATTAACCTGAGCTAAGG
TTTAgctccaagattttttgaaatttcgacattaaaaaaaagtcagtttt
ttctcgacaaacctgtatactttttatTGGTGCACCGGGTATGTAGccgt
tataagcctttgtaggctaacCACAAATGAAAACTACTGCAATTAAAGTA
TACCGCaatgagggatttccctgactgtcatttcaaccatttttatcaat
tttctgccaagtttgaaaaatctgaatacAGTATAATGGctcccaaaacg
gaggttttgcCTTAAAGAGccatgtttttactttttttaaacctAAGAAA
ACTTCAGATTCAAAATCCTAACACATTTTTATTGggtctgaaaaaagaaa
aataccaaaatgtcatttttaacatggctaattttcttcttccttttttt
tcgaaaatccctTTTTCTAGACTAAAACCGTCAAAAGTCAAACAAGATTG
GAATTAAATGATATGTACGGACGTACGGATAATGGGTCCTAGGACCTTTT
AGTGCGATATTTATAGATAgatcgtcgcatcaaaataagaaagccttaag
tccatttttgtagttttgagaaaatcaagtttaaaggtttgaaatgGCTN
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NAAGCcaaaaattcgataaaaaatggggtgtaaagcatcggtatggtcat
aactcaatttttgaaaaaatggacttaaggctttcttattttgatgcgac
gagaTAGTTAAGCCCTAAAAACTCTGGAAAATATAAACATAATACCAACt
aagaaaattcgaaatatttcacgataaaattaaaattagagACGAAAATC
TAATGATTTTATCGTGTCATTAATTTCTGACATATTTAAGTGATGtgttt
ttaacaatttcaatttaattgaatGGACGTTTTGGGGACCACTaacctcc
gttttgacaaccatTTGTATGAAGATAAAGAGAGCATATATTTCTCAAGA
GCAATGTTTACAAACTGTTGTTTACAAACTGCCAATTTCTTCTTAAAATT
ATGTGGACACcctatatttaaaaaaactttaagcgCCCGTTCATGCTATA
TTATAATAAAGCCATACATTTCTATTTCTGACTTTTTTAAGATGTAAAGC
ATTGCCTTCATACCTATTGATAGTAATTTGATGTCGGTGCTATGCTTTTT
GATTAAGATATTTCGAAGAAACTAAACCTTGGTTTTAAgggccattagaa
aaatatgactcaactttgactgaaaaaaaatcatacaaaaatctttatat
taagaaaattatcttttgggaataaaaataagaaaaaatttaacGTTCCT
TCCCTATTTTCTGAATTCACTAGAAAGATTTCAATTTGGATAGACATTTT
GGGAGCCACATACATACTGTACCAGACTGTACACAtttgaaatattcaaa
gttttagaaaattataaaattgaaatttctaatCAAGTAgcaaaaaattt
actttttccaTCAATCCGCATAAAATGATCTTatacttttaattattttc
ttcttctcaAGAGCAATGTTTACAAACTGTTGTTTACAAACTGCCAATTT
CTTCTTAAAGTTATGTGGACACcctatatttaaaaaaattttaagcgCCC
GTTCATGCTATATTATAATAAAGCCAtacatttctatttctatttctatc
catttatttgcataagcctaaaaaagctaacatcgcaaatatttaacaaa
aacttGTTTATATAcaccattggaaagatattttcaaggaGAATCATCTA
AAAGATTGAAATATTTAAgacttgaaaattgaaaaaagaagatttttccc
CTGCTTCAAGAATCATGTAATTTGCCTTTTTAAGTATTTGAACCTTGCTT
TTCAAAACTGCACTCAGAAAAGCAAAGTATCCACATATTTTTCTTTGAGA
CAgtcttttaaattatttttttttcgggGGAATTTCACTCAACAAACCAA
ATCATTTGAAACTCTGTCCTGTTATTGTTTCCAGACATCAGTTACTTGAA
GATGGCAAGCAACAAGATCATCGAAAACGTTGCCATGAGAACGCTCACAA
TCAACAAAATTCAAGAACTTCTCTTGGATCCAGAATCTCCAGAACTCTCC
CTCATCATGGATTTCGTCCATACTATTCACTCCAACCTCGATGCAGAACA
TATTGAGGATGATCCAGACTGGTTTGAAGGTGTTGCATCCaattacaaaa
acaaaacacacgTTATGAGAGATTCTGCTAAAAATCGCATTCGTGGATAT
TTGGCAAAAACTAAAGATTTCGCAAGCTCCACTGTAAGGTTTTCGATTAT
TCAAAtgcattttaatgttttttagtCTGTATTGCGAATGTTCACTATCT
TTAACCTTTTAAGTTTAAATAATATATTCTCAATGagatttaatgttttt
ttgtatCATTTCTCTTGATTCCTGGTGCATTTGATAATTGATGTGACGAA
ATTGAATACAGAGATGAATACCAACGGttattactctcgggtacctaata
gccgggtttggaataagcagggggttggaaaaaatctcaaaatttgataa
gcgggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNgggggttggaaaaaaattcaaaat
ttaaaaagggggggggggggtcggaataaaaatgtcctgggtggaaaatg
ttcgaaaaggaggctaatacagcagaattagggcaaaagggggaactttc
aaaaaattttcctaaaaatcaataagcggaggggggttggaataagaatg
tcctggatggaaaattttcgaaaaattaattagcagcctcctggctatta
ggtacccgagagtatacgCTATTTATCGGCAAAATAAGGGAACTCTCGTT
TTGACAGCTGGAAATATTTCTGAAAATTAGTAGTCAGGGATCCTTGTAAG
ATCCGTTTGTTGGAAACAAGATCAGGAAATTAACAAAGAGAGGGTGTCGT
CTATTAGGCCTATATAGTAAGTTGACAACAAATCGGCGTTGTTCTAATgg
acaaattatttttttagaaaatgccGGGAAAGAAAGTTCGAGTGGAATTC
ACCAACATCATCGATCAATTTCAAAACGAATTAAAAGAGAGAGGATATTA
CGGGCAGATATTCGATCGGTTCGCTTCTGAAAAAgaaagtgacgtcatca
aattatgcGATGATAAGGGCTGGTTTACATGTCAAGGTGCTTTTGATATG
AAGGATTGTGAGCGAGTGCATCGAATCAACCCTTATGCTTCGAAAGATGC
ACGTGTCTTGTTTAGCACGTGGAACCTCGATCACAGGTCTGTTCCATAAT
AGTCATATTTTACTCCGTTTTCATGAAATAAGGGAACGCGTTTCCATTAC
CTTATATACATAGCGTCATCCTGGGTTTAGGTCctaggcaaaaattaggt
cccccctgagttttaagtccccccaaagatttatgaattttttgttagcc
cccaggacttttgaccctagacactttcaaaaaattgatccagtaaaaaa
gggttttctaATGTAAATTGTGTTCAGTTCaaagtttaagataaaatatt
ttgcacactttctaaaaaattttcagattcatgagcttcaatttgagtaa
ttgaagctaCTATTAAGCTAgtattaagctgaattattttagcccccacg
ttaagtgatgagattttaacTCCCNaaaatattttgcacactttctaaaa
atttttcagattcatgagcttcaatttgagtaattgaagccaactactat
taagctgaattattttagcccccacgttttaagtgatgagattttagctc
ccccaagtacataggtcccccaaaaaagtggtggtacttccagccccctc
cttttttgggaaaaatttagggTGTAGCCCTCCCCCCCCCAACCAGtagg
gggctgacgctatgacATATTCTTTACATACGCCAATTACACTTGAAACC
TTCACTTTTGCTTCTTTGTGAAACGTATTTCTATCCTAGTCTATGGAATC
TTGAAAACACAAAAATCTgtgaaaatttggatttttggacctatcccggt
gggtggaggtcctttaaattaaccgacgttcgtttgtttgttcgtccgtc
cgtccgtccgtccgtccgtccgtccgtccgtccgtccgttcgtccgtccg
ttcgtctgttaccagcttttctcgggattggctcattagtttttctgatt
ttttgcacaatgatgcaaaatggtgattcgCCAAAAGTGCCTGAAAatgg
ggttttttggactttgtttgtgaagttgcttcattagttttttctaattt
tttagaCTGCTCACTACATATTCTTACTCTtatgctatttgtcctatttt
tatctgattctcatcatcaggtaggtccattcagcatgctTGACCCCCGG
CATGCgaatcgaattgagggggccaaaaaaaaaatgtcgacttttcatcc
ttatttcacccctctaaaggGTATATATAagcttttttaaaaagtgaaaa
taaattaCTTTGTAAAATATTGGGGGGCAtggcatgttgcttgtttagcC
TGGTTTAGccttaatttcatttcatttaaggGACCCAGCCaaacaatatt
ttaaattttggctaCTTTTCTGTCTCTGATTTCTTAGGATTGAAAAATCG
CGCGAGATTTTACCACGGCTGTTGGAATCGATCATCGAATGTCCGAAGAC
TAAACAGGTCAACTGGAAATATTTCTTTGAACTTCTGTTTACTGTGCAGA
ACTTGAAGCTTGTTGATATACGTTGTCATAAGAAGGAAAAACACACGGCG
TGTGTTGTCGACCGCCGTAAAGTTTACGCATTACGTAAGAAATAAGTGAA
TGTGATTTCTGTTGATTTAGGATGTATATGTAGTTCCTCGTCTGCTAGAG
AGTGCAAGAAAGTAATTTTTACGAGAACAAGtgtattttcaaataattat
tttatatcTGCATGCATTTTCCTTTGCAGTGACCTTATGATTACATTTCC
CCCAACTTTTATAACATATTATCTTTCTCGTAAAATTGCTTACTACAAAA
ACCATGCCATACATGATAAAAGGGGTTATATTAAAACAATATTCCTCTTT
TTTCATGTTATCATAAATCATCGCTTTGAAAGAGAAGATTATATTGTCGC
TATAGAAACATGTTATAACACGCATGGCTAATTACAGCATATTACGTATT
ATTTATTCACGAAAACCTCTACACGGGAGAGTGATTTCTTTTGTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045982-exon-scaffold_105-1491911889:221279..221696 | TCONS_00045982-exon-scaffold_105-1491911889:221279..221696 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1510915933:221279..221696 | TCONS_00045982-exon-scaffold_105-1510915933:221279..221696 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1575043694:221279..221696 | TCONS_00045982-exon-scaffold_105-1575043694:221279..221696 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1491911889:232663..232961 | TCONS_00045982-exon-scaffold_105-1491911889:232663..232961 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1510915933:232663..232961 | TCONS_00045982-exon-scaffold_105-1510915933:232663..232961 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1575043694:232663..232961 | TCONS_00045982-exon-scaffold_105-1575043694:232663..232961 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1491911889:233746..234014 | TCONS_00045982-exon-scaffold_105-1491911889:233746..234014 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1510915933:233746..234014 | TCONS_00045982-exon-scaffold_105-1510915933:233746..234014 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1575043694:233746..234014 | TCONS_00045982-exon-scaffold_105-1575043694:233746..234014 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1491911889:235366..235977 | TCONS_00045982-exon-scaffold_105-1491911889:235366..235977 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1510915933:235366..235977 | TCONS_00045982-exon-scaffold_105-1510915933:235366..235977 | Clytia hemisphaerica | exon |
| TCONS_00045982-exon-scaffold_105-1575043694:235366..235977 | TCONS_00045982-exon-scaffold_105-1575043694:235366..235977 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:221279..235977 + |
Blast
BLAST of TCONS_00045982 vs. Swiss-Prot (Human)
Match: DFFB (DNA fragmentation factor subunit beta OS=Homo sapiens GN=DFFB PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.237e-60 Identity = 108/274 (39.42%), Postives = 160/274 (58.39%), Query Frame = 1
Query: 322 EDGTEVEDDSYLLSLPTQTVLIVLQIGEVWEGYISYLKMASNKIIENVAMRTLTINKIQXXXXXXXXXXXXXIMDFVHTIHSNLDAEHIEDDPDWFEGVASNYKNKTHVMRDSAKNRIRGYLAKTKDFASSTKMPGKKVRVEFTNIIDQFQNELKERGYYGQIFDRFASEKESDVIKLCDDKGWFTCQGAFDMKDCERVHRINPYASKDARVLFSTWNLDHRIEKSREILPRLLESIIECPKTKQVNWKYFFELLFTVQNLKLVDIRCHKKEKH 1143
EDGTE+ +D Y S+P L++L +G+ W+GY+S ++ + E L Q L + L+ D +H + N+ AE +DP WFEG+ S +++K+ +R S ++RIR YL + + S+ G + + EF ++ L+ Y G FDR A +LC +GWF+CQG FDM C H INPY+++++R+LFSTWNLDH IEK R I+P L+E+I E ++V+W+YF+ LLFT +NLKLV I CHKK H
Sbjct: 50 EDGTELTED-YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQV--GLIQAAQQLLCDEQAPQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGYLRYSCESRIRSYLREVSSYPSTV---GAEAQEEFLRVLGSMCQRLRSMQYNGSYFDRGAKGGS----RLCTPEGWFSCQGPFDMDSCLSRHSINPYSNRESRILFSTWNLDHIIEKKRTIIPTLVEAIKE-QDGREVDWEYFYGLLFTSENLKLVHIVCHKKTTH 312
The following BLAST results are available for this feature:
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