TCONS_00004547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004547
Unique NameTCONS_00004547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004547 ID=TCONS_00004547|Name=TCONS_00004547|organism=Clytia hemisphaerica|type=transcript|length=5869bp
ccgggggttggagaattttcgaaaaattaacaagcgtgggagggggcgtt
tatttggaacctaagagtatggAAAAAAGGACAGTTTTCATGTTGGTTAT
CttccaaacaaaattatataaaaattaaaaccaatAAATAATACGATGTC
GACAATTcgatcaaaaaatatatttaaagaaAGTCACAAAAAATTATgct
aaagttttgaaaattatgcCAAATGAAAAAGTAATTAAATATATTACAAA
TCCTAAAGATATACTTACTAGAATCAATCAATGCTAAGACGAAATGGCTT
TTTCAAGAAATAATTGTGTAACAaaccaaaaatccaaaatcttcTTGACA
ACCTTGTCAGTTTACActatagacagctccaggcttttcaAGGCTTTAAG
AACATGACGTAacctatacacgtttttttataagaacaaactatgtaaga
gcataaggcttcgatgttcaaaatattaagaacaagttaagaacatttta
aggcttcgcagactctaaaacacccaatttcttaagaaaatggacaaaat
actcaataaatgaagaaaataagaaaactttaagaacatttaggcttaac
agaacatccaaaagcttcaaaatttttggatgttcttataaaagaaacgt
gtagTTTATGTGAATTACCGAAAGGTCTAAAGCTAAACAAATATCAGTGT
TTATCTCttaattgtattttttaaataaaattcattcagaagcagccaac
gagcccatttccccaaaatatctgtttccctttttcaggagagagctttt
ttgaaaaattgggaaacagattcaattttctaggaaagaccttttcctta
aaactatctgtttccccgctccagctgatgacgtcatcagagagaaacag
atcaatatttctaggagatgacatgATAAATTGGGAAACAGATATCTGTT
TCCAAAAAGATGATATTGCATTGGAAACAGATTGAACTTTCTGATGGAAA
ACAGATATCAATCACAAAGAGCAAGGGAAACAGATGAAAATTTCCAGGAG
GGGAAACAGATATCCTATTCCTTATAATAAGCTTGGGAGAACAGATCAAA
ATTTTACTTCTGAAAATTGTGGAAACAGACCAAATTTTCTAGGGAAGATA
CTTTTAGATTAAAAATTTAGGTTTGGAGGAGAAACAGATTTATTTCTAGG
AATAAGATATTTGGAACTTCAGAACTTTTGGCCAACAGATCAAATTTCCA
GGAAGGCTATGCCTGGGAAACAGATGTTTAAAAAAAGGTCCTCGCTGGAT
GCTTTCGTTCATTTTCAGTGAATATTTTCAAAATAAACCCCAAGCCTCTG
ATATTAATATTAAAGTTGATAATATACAAATAACCAAATATGTAAAAATA
ATAACGAAATTAGTTTCAAAAATGAAAGATACATTACCCTTAAGATATTC
CCTAATTTTTGTATGTATTACGTTTATATTACGTTCCCTAAAGAATGGGT
CAATAAAAAAACACTTTCTTTATCCAGATGAGGTATGTAAAAGccaTTAT
CAAAGAGCTTTCGAAACTATAATCATGAATATTGTTCCGAAATTAGTGGA
AATAATAGGCAACTCAAATTCTAATGCCTTCAATAATAGTAACCAATATA
AGAAATAAAATCCAAACCAatgttaattaaaaaataaatgataaaaaatg
ctttttgttactttatttttcactttttgtttatatttgatgcATGTAAA
AATCTATGGCAGTGAGTTTTTTGTTCATTAAATCACCTCGATCAAGTATT
TTGTGTAGATTTCAAAGGAGTATCCTCGGTTATCTCAGCTTTTTTTGTTG
TTCGTCGTCTCAAATACAAAATGACCAGCAATAAAGCAATCAAAGCCAAC
GCAACTAAAATGATCAGAATGATGTaaccaattttgatttttgtctcTTC
TCCCAAGATCTCACAGTTTTGTCCTGAATATCCACCGACACACAAACATT
GATATTTATCTGAAGTTTCATCCAAAGGTTGGCAAGTTCCATTGTTTTGG
CAAGGATTGTTGAAATAACAAGCTTTTTCAATCCCACATTTCTCTCCAAG
AAATCCTGAACTGCAGTTGCACATAAAAGTGTCTACAATTTCCAAACATG
TTCCATTGTTTTGGCAAGGATTGTTGAAATAACAAGGTTTTTCAATCTCA
CATTTCTCTCCAAGAAATCCTGAACTGCAGTTGCACATAAAAGTGTCTAC
AATTTTCAAACATGTTCCATTATTTTGGCAAGGATTATCCAGACATGCGT
TTTCGAACTGACAAAATCTTCCCTGATTCTTCTCGGAGCACACGCAAGTA
TAATCCAGCTTATCGACAACTTTACATGTTGAATTATTCTGACATTCATT
CAAAGAACAAGCAGTGCATTTCAGTTTGTTGGTCCGGTAAAGGTCTTCGT
AAATATCATCATCCTTCAAGTCTGCTGGTGTTTTACaattcccaaaaatt
aaaaatttatcattacCATTAAAAAAGTATTGCATGGTGTTAAATAAAGC
ACAGTCACAATGCAATGGGTTCTGCTCAAGATAAAGCTCATTAGGTTTCA
AAGCAAACCAATTTTTTTGAAGCGTTGTCAAACTGTTGTTGGTAAGATCT
ACGGATAGAGAATTGAAAGTCTTTGGTGGAAAGTCTGTAAATTGATTACT
TTTCATCTTCAGAATCACTAACCGTTGGTTCCGGAACACACCTTCAGGGA
GGGAGGTCAGCTTATTATAACTGAGCCATAACCTTTCTAACTTGGTAGCC
GCTGCAAACGCATCTCTTTCAATTTTCCCAAGAGCATTTCCATCAAAACT
AATCCACAGCAGGTTCTCGGCACCATTTAGTGTACCGTTTTTCAACATTT
CAATCTGATTATTCTCTGCAAAGACCTTTTGGAGGTTTTGTAGGTTCTCA
AAAATGTTTGGTTCAATCTCTGTAAGAGTGTTGCTGAAAATGTCAAGGAT
CTTGATATTTTGGTAGCCGAGAAAATCATCCCTGCTAATCTTGCtgattt
tgttttgatcaaTCGAAAAACGGTGGACAGATGGTATGTAGTCAGATACA
TTTGCTGGTGGCTTTGTCAGAAGATTTTGTCCAAGTTCAATTATCTCCAA
CTTGCTGAATTTGGTGAAAGCTTCAGCTGGGAAATTAGTAATCAAATTGA
CTTTCAGTATTAACTCTTCTGCTGTAAGTGGGTCACCAGTATGGGCAATT
TCAAGNNNNgctccagctgatgacgtcatcagagagaaacagatcaatat
ttctaggagatgacatgataaattgggaaacagatatctgtttccaaaaa
gatgatattgcattggaaacagattgaactttctgatggaaaacagatat
caatcacaaagagcaagggaaacagatgaaaatttccaggaggggaaaca
gatatcctattCCTTATAATAAGCTtgggagaacagatcaaaattttact
tctgaaaattgtggaaacagaccaaattttctagggaagatacttttaga
ttaaaaatttaggtttggaggagaaacagatttatttctaggaataagat
atTTGGAACTTCAGAACttttggccaacagatcaaatttccaggaaggct
atgcctgggaaacagatgtttaaaaaaaggtcctcgctGGATGCTTTCGT
TCATTTTCagtgaatattttcaaaataaacccCAAGCCTCTGATATTAAT
ATTAAAGTTGATAATATACAAATAAccaaatatgtaaaaataataacgaa
attagtttcaaaaatgaaagataCATTACCCTTAAGATATTCCCTAATTT
TTGTATGTATTACGTTTATATTACGTTCCCTAAAGAATGGGTCAATAAAA
AAACACTTTCTTTATCCAGATGAGGTATGTAAAAGccaTTATCAAAGAGC
TTTCGAAACTATAATCATGAATATTGTTCCGAAATTAGTGGAAATAATAG
GCAACTCAAATTCTAATGCCTTCAATAATAGTAACCAATATAAGAAATAA
AATCCAAACCAatgttaattaaaaaataaatgataaaaaatgctttttgt
tactttatttttcactttttgtttatatttgatgcATGTAAAAATCTATG
GCAGTGAGTTTTTTGTTCATTAAATCACCTCGATCAAGTATTTTGTGTAG
ATTTCAAAGGAGTATCCTCGGTTATCTCAGCTTTTTTTGTTGTTCGTCGT
CTCAAATACAAAATGACCAGCAATAAAGCAATCAAAGCCAACGCAACTAA
AATGATCAGAATGATGTaaccaattttgatttttgtctcTTCTCCCAAGA
TCTCACAGTTTTGTCCTGAATATCCACCGACACACAAACATTGATATTTA
TCTGAAGTTTCATCCAAAGGTTGGCAAGTTCCATTGTTTTGGCAAGGATT
GTTGAAATAACAAGCTTTTTCAATTTCACATTTCTCTCCAAGAAATCCTG
AACTGCAGTTGCACATAAAAGTGTCTACAATTCTCAAACATGTTCCATTG
TTTTGGCAAGGATTGTTGAAATAACAAGGTTTTTCAATCTCACATTTCTC
TCCAAGAAATCCTGAACTGCAGTTGCACATAAAGGTGTCTACAATTTTCA
AACATGTTCCATTATGTTGACAAGGATTATCCAGACATGCGTTTTCGAAC
TGACAAAATCTTCCCTGATTCTTCTCGGAGCACACGCAAGTATAATCCAG
CTTATCGACAACTTTACATGTTGAATTATTCTGACATTCATTCAAAGAAC
AAGCAGTGCATTTCAGTTTGTTGGTCCGGTAAAGGTCTTCGTAAATATCA
TCATCCTTCAACTCTGCTGGTGTTTTACaattcccaaaaattaaaaattt
atcattacCATTAAAAAAGTATTGCATGGTGTTATATAAAGCACAGTCAC
AATGCAATGGGTTCTGCTCAAGATAAAGCTCATTAGGTTTCAAAGCAAAC
CAATTTTTTTGAAGCGTTGTCAAACTGTTGTTGGTAAGATCTACGGATAG
AGAATTGAAAGTCTTTGGTGGAAAGTCTGTAAATTGATTACTTTTCATCT
TCAGAATCACTAACCGTTGGTTCCGGAACACACCTTCAGGGAGGGAGGTC
AGCTTATTATAACTGAGCCATAACCTTTCTAACTTGGTAGCCGCTGCAAA
CGCATCTCTTTCAATTTTCCCAAGAGCATTTCCATCAAAACTAATCCACA
GCAGGTTCTCGGCACCATTTAGTGTACCGTTTTTCAACATTTCAATCTGA
TTATTCTCTGCAAAGACCTTTTGGAGGTTTTGTAGGTTCTCAAAAATGTT
TGGTTCAATCTCTGTAAGAGTGTTGCTGAAAATGTCAAGGATCTTGATAT
TTTGGTAGCCGAGAAAATCATTCCTGCTAATCTTGCTGATTTNGATCTTG
ATATTTTGGTAGCCGAGAAAATCATCCCTGCTAATCTTGCtgattttgtt
ttgatcaaTCGAAAAACGGTGGACAGATGGTATGTAGTCAGATACATTTG
CTGGTGGCTTTGTCAGAAGATTTTGTCCAAGTTCAATAATCTCCAACTTG
CTGAATTTGGTGAAAGCTTCAGCTGGGAAATCAGTAATCAAATTGACTTT
CAGTATTAACTCTTCTGCTGTAAGTGGGTCACCAGTACGGGCAATTTCAA
GTAACACAGTATCATTGATGTTTTGTCCTCCGCAAGTCCATTTCAATCGT
GAACATTGGCATTGTTCAGGACATGTTTGCGCTTGTGAATAAATGATGAA
GACCACAAGCAAAATGAATAGAAATCCCTTCATTGTTACTGCCTGGTACG
CTCCTCATTGGCCGGATcc
Run BLAST on NCBI

transcript from alignment at sc0000045:318659..324587-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004547 ID=TCONS_00004547|Name=TCONS_00004547|organism=Clytia hemisphaerica|type=transcript|length=5929bp|location=Sequence derived from alignment at sc0000045:318659..324587- (Clytia hemisphaerica)
CCGGGGGTTGGAGAATTTTCGAAAAATTAACAAGCGTGGGAGGGGGCGTT
TATTTGGAACCTAAGAGTATGGAAAAAAGGACAGTTTTCATGTTGGTTAT
CTTCCAAACAAAATTATATAAAAATTAAAACCAATAAATAATACGATGTC
GACAATTCGATCAAAAAATATATTTAAAGAAAGTCACAAAAAATTATGCT
AAAGTTTTGAAAATTATGCCAAATGAAAAAGTAATTAAATATATTACAAA
TCCTAAAGATATACTTACTAGAATCAATCAATGCTAAGACGAAATGGCTT
TTTCAAGAAATAATTGTGTAACAAACCAAAAATCCAAAATCTTCTTGACA
ACCTTGTCAGTTTACACTATAGACAGCTCCAGGCTTTTCAAGGCTTTAAG
AACATGACGTAACCTATACACGTTTTTTTATAAGAACAAACTATGTAAGA
GCATAAGGCTTCGATGTTCAAAATATTAAGAACAAGTTAAGAACATTTTA
AGGCTTCGCAGACTCTAAAACACCCAATTTCTTAAGAAAATGGACAAAAT
ACTCAATAAATGAAGAAAATAAGAAAACTTTAAGAACATTTAGGCTTAAC
AGAACATCCAAAAGCTTCAAAATTTTTGGATGTTCTTATAAAAGAAACGT
GTAGTTTATGTGAATTACCGAAAGGTCTAAAGCTAAACAAATATCAGTGT
TTATCTCTTAATTGTATTTTTTAAATAAAATTCATTCAGAAGCAGCCAAC
GAGCCCATTTCCCCAAAATATCTGTTTCCCTTTTTCAGGAGAGAGCTTTT
TTGAAAAATTGGGAAACAGATTCAATTTTCTAGGAAAGACCTTTTCCTTA
AAACTATCTGTTTCCCCGCTCCAGCTGATGACGTCATCAGAGAGAAACAG
ATCAATATTTCTAGGAGATGACATGATAAATTGGGAAACAGATATCTGTT
TCCAAAAAGATGATATTGCATTGGAAACAGATTGAACTTTCTGATGGAAA
ACAGATATCAATCACAAAGAGCAAGGGAAACAGATGAAAATTTCCAGGAG
GGGAAACAGATATCCTATTCCTTATAATAAGCTTGGGAGAACAGATCAAA
ATTTTACTTCTGAAAATTGTGGAAACAGACCAAATTTTCTAGGGAAGATA
CTTTTAGATTAAAAATTTAGGTTTGGAGGAGAAACAGATTTATTTCTAGG
AATAAGATATTTGGAACTTCAGAACTTTTGGCCAACAGATCAAATTTCCA
GGAAGGCTATGCCTGGGAAACAGATGTTTAAAAAAAGGTCCTCGCTGGAT
GCTTTCGTTCATTTTCAGTGAATATTTTCAAAATAAACCCCAAGCCTCTG
ATATTAATATTAAAGTTGATAATATACAAATAACCAAATATGTAAAAATA
ATAACGAAATTAGTTTCAAAAATGAAAGATACATTACCCTTAAGATATTC
CCTAATTTTTGTATGTATTACGTTTATATTACGTTCCCTAAAGAATGGGT
CAATAAAAAAACACTTTCTTTATCCAGATGAGGTATGTAAAAGGCTTTAT
GCAATCTCATTGAAAAAAAAAAGCCATTATCAAAGAGCTTTCGAAACTAT
AATCATGAATATTGTTCCGAAATTAGTGGAAATAATAGGCAACTCAAATT
CTAATGCCTTCAATAATAGTAACCAATATAAGAAATAAAATCCAAACCAA
TGTTAATTAAAAAATAAATGATAAAAAATGCTTTTTGTTACTTTATTTTT
CACTTTTTGTTTATATTTGATGCATGTAAAAATCTATGGCAGTGAGTTTT
TTGTTCATTAAATCACCTCGATCAAGTATTTTGTGTAGATTTCAAAGGAG
TATCCTCGGTTATCTCAGCTTTTTTTGTTGTTCGTCGTCTCAAATACAAA
ATGACCAGCAATAAAGCAATCAAAGCCAACGCAACTAAAATGATCAGAAT
GATGTAACCAATTTTGATTTTTGTCTCTTCTCCCAAGATCTCACAGTTTT
GTCCTGAATATCCACCGACACACAAACATTGATATTTATCTGAAGTTTCA
TCCAAAGGTTGGCAAGTTCCATTGTTTTGGCAAGGATTGTTGAAATAACA
AGCTTTTTCAATCCCACATTTCTCTCCAAGAAATCCTGAACTGCAGTTGC
ACATAAAAGTGTCTACAATTTCCAAACATGTTCCATTGTTTTGGCAAGGA
TTGTTGAAATAACAAGGTTTTTCAATCTCACATTTCTCTCCAAGAAATCC
TGAACTGCAGTTGCACATAAAAGTGTCTACAATTTTCAAACATGTTCCAT
TATTTTGGCAAGGATTATCCAGACATGCGTTTTCGAACTGACAAAATCTT
CCCTGATTCTTCTCGGAGCACACGCAAGTATAATCCAGCTTATCGACAAC
TTTACATGTTGAATTATTCTGACATTCATTCAAAGAACAAGCAGTGCATT
TCAGTTTGTTGGTCCGGTAAAGGTCTTCGTAAATATCATCATCCTTCAAG
TCTGCTGGTGTTTTACAATTCCCAAAAATTAAAAATTTATCATTACCATT
AAAAAAGTATTGCATGGTGTTAAATAAAGCACAGTCACAATGCAATGGGT
TCTGCTCAAGATAAAGCTCATTAGGTTTCAAAGCAAACCAATTTTTTTGA
AGCGTTGTCAAACTGTTGTTGGTAAGATCTACGGATAGAGAATTGAAAGT
CTTTGGTGGAAAGTCTGTAAATTGATTACTTTTCATCTTCAGAATCACTA
ACCGTTGGTTCCGGAACACACCTTCAGGGAGGGAGGTCAGCTTATTATAA
CTGAGCCATAACCTTTCTAACTTGGTAGCCGCTGCAAACGCATCTCTTTC
AATTTTCCCAAGAGCATTTCCATCAAAACTAATCCACAGCAGGTTCTCGG
CACCATTTAGTGTACCGTTTTTCAACATTTCAATCTGATTATTCTCTGCA
AAGACCTTTTGGAGGTTTTGTAGGTTCTCAAAAATGTTTGGTTCAATCTC
TGTAAGAGTGTTGCTGAAAATGTCAAGGATCTTGATATTTTGGTAGCCGA
GAAAATCATCCCTGCTAATCTTGCTGATTTTGTTTTGATCAATCGAAAAA
CGGTGGACAGATGGTATGTAGTCAGATACATTTGCTGGTGGCTTTGTCAG
AAGATTTTGTCCAAGTTCAATTATCTCCAACTTGCTGAATTTGGTGAAAG
CTTCAGCTGGGAAATTAGTAATCAAATTGACTTTCAGTATTAACTCTTCT
GCTGTAAGTGGGTCACCAGTATGGGCAATTTCAAGNNNNGCTCCAGCTGA
TGACGTCATCAGAGAGAAACAGATCAATATTTCTAGGAGATGACATGATA
AATTGGGAAACAGATATCTGTTTCCAAAAAGATGATATTGCATTGGAAAC
AGATTGAACTTTCTGATGGAAAACAGATATCAATCACAAAGAGCAAGGGA
AACAGATGAAAATTTCCAGGAGGGGAAACAGATATCCTATTCCTTATAAT
AAGCTTGGGAGAACAGATCAAAATTTTACTTCTGAAAATTGTGGAAACAG
ACCAAATTTTCTAGGGAAGATACTTTTAGATTAAAAATTTAGGTTTGGAG
GAGAAACAGATTTATTTCTAGGAATAAGATATTTGGAACTTCAGAACTTT
TGGCCAACAGATCAAATTTCCAGGAAGGCTATGCCTGGGAAACAGATGTT
TAAAAAAAGGTCCTCGCTGGATGCTTTCGTTCATTTTCAGTGAATATTTT
CAAAATAAACCCCAAGCCTCTGATATTAATATTAAAGTTGATAATATACA
AATAACCAAATATGTAAAAATAATAACGAAATTAGTTTCAAAAATGAAAG
ATACATTACCCTTAAGATATTCCCTAATTTTTGTATGTATTACGTTTATA
TTACGTTCCCTAAAGAATGGGTCAATAAAAAAACACTTTCTTTATCCAGA
TGAGGTATGTAAAAGGCTTTATGCAATCTCATTGAAAAAAAAAAGCCATT
ATCAAAGAGCTTTCGAAACTATAATCATGAATATTGTTCCGAAATTAGTG
GAAATAATAGGCAACTCAAATTCTAATGCCTTCAATAATAGTAACCAATA
TAAGAAATAAAATCCAAACCAATGTTAATTAAAAAATAAATGATAAAAAA
TGCTTTTTGTTACTTTATTTTTCACTTTTTGTTTATATTTGATGCATGTA
AAAATCTATGGCAGTGAGTTTTTTGTTCATTAAATCACCTCGATCAAGTA
TTTTGTGTAGATTTCAAAGGAGTATCCTCGGTTATCTCAGCTTTTTTTGT
TGTTCGTCGTCTCAAATACAAAATGACCAGCAATAAAGCAATCAAAGCCA
ACGCAACTAAAATGATCAGAATGATGTAACCAATTTTGATTTTTGTCTCT
TCTCCCAAGATCTCACAGTTTTGTCCTGAATATCCACCGACACACAAACA
TTGATATTTATCTGAAGTTTCATCCAAAGGTTGGCAAGTTCCATTGTTTT
GGCAAGGATTGTTGAAATAACAAGCTTTTTCAATTTCACATTTCTCTCCA
AGAAATCCTGAACTGCAGTTGCACATAAAAGTGTCTACAATTCTCAAACA
TGTTCCATTGTTTTGGCAAGGATTGTTGAAATAACAAGGTTTTTCAATCT
CACATTTCTCTCCAAGAAATCCTGAACTGCAGTTGCACATAAAGGTGTCT
ACAATTTTCAAACATGTTCCATTATGTTGACAAGGATTATCCAGACATGC
GTTTTCGAACTGACAAAATCTTCCCTGATTCTTCTCGGAGCACACGCAAG
TATAATCCAGCTTATCGACAACTTTACATGTTGAATTATTCTGACATTCA
TTCAAAGAACAAGCAGTGCATTTCAGTTTGTTGGTCCGGTAAAGGTCTTC
GTAAATATCATCATCCTTCAACTCTGCTGGTGTTTTACAATTCCCAAAAA
TTAAAAATTTATCATTACCATTAAAAAAGTATTGCATGGTGTTATATAAA
GCACAGTCACAATGCAATGGGTTCTGCTCAAGATAAAGCTCATTAGGTTT
CAAAGCAAACCAATTTTTTTGAAGCGTTGTCAAACTGTTGTTGGTAAGAT
CTACGGATAGAGAATTGAAAGTCTTTGGTGGAAAGTCTGTAAATTGATTA
CTTTTCATCTTCAGAATCACTAACCGTTGGTTCCGGAACACACCTTCAGG
GAGGGAGGTCAGCTTATTATAACTGAGCCATAACCTTTCTAACTTGGTAG
CCGCTGCAAACGCATCTCTTTCAATTTTCCCAAGAGCATTTCCATCAAAA
CTAATCCACAGCAGGTTCTCGGCACCATTTAGTGTACCGTTTTTCAACAT
TTCAATCTGATTATTCTCTGCAAAGACCTTTTGGAGGTTTTGTAGGTTCT
CAAAAATGTTTGGTTCAATCTCTGTAAGAGTGTTGCTGAAAATGTCAAGG
ATCTTGATATTTTGGTAGCCGAGAAAATCATTCCTGCTAATCTTGCTGAT
TTNGATCTTGATATTTTGGTAGCCGAGAAAATCATCCCTGCTAATCTTGC
TGATTTTGTTTTGATCAATCGAAAAACGGTGGACAGATGGTATGTAGTCA
GATACATTTGCTGGTGGCTTTGTCAGAAGATTTTGTCCAAGTTCAATAAT
CTCCAACTTGCTGAATTTGGTGAAAGCTTCAGCTGGGAAATCAGTAATCA
AATTGACTTTCAGTATTAACTCTTCTGCTGTAAGTGGGTCACCAGTACGG
GCAATTTCAAGTAACACAGTATCATTGATGTTTTGTCCTCCGCAAGTCCA
TTTCAATCGTGAACATTGGCATTGTTCAGGACATGTTTGCGCTTGTGAAT
AAATGATGAAGACCACAAGCAAAATGAATAGAAATCCCTTCATTGTTACT
GCCTGGTACGCTCCTCATTGGCCGGATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002558XLOC_002558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004547-exon-sc0000045-1575043694:323045..324587TCONS_00004547-exon-sc0000045-1575043694:323045..324587Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1575043694:320623..323014TCONS_00004547-exon-sc0000045-1575043694:320623..323014Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1575043694:318659..320592TCONS_00004547-exon-sc0000045-1575043694:318659..320592Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1510915933:323045..324587TCONS_00004547-exon-sc0000045-1510915933:323045..324587Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1510915933:320623..323014TCONS_00004547-exon-sc0000045-1510915933:320623..323014Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1510915933:318659..320592TCONS_00004547-exon-sc0000045-1510915933:318659..320592Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1491911889:323045..324587TCONS_00004547-exon-sc0000045-1491911889:323045..324587Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1491911889:320623..323014TCONS_00004547-exon-sc0000045-1491911889:320623..323014Clytia hemisphaericaexon
TCONS_00004547-exon-sc0000045-1491911889:318659..320592TCONS_00004547-exon-sc0000045-1491911889:318659..320592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:318659..324587 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.31153	5.86015	4.21275	4.40068	12.638	8.5984	6.60529	7.28286	5.07609	6.41707	4.46925	3.56447	3.10751	2.9383	5.06678	5.86658	2.28539	2.49035	3.82995	5.45404	2.75135	2.74609	5.58528	5.17368	1.70079	2.69753	18.6098	16.5635	7.96288	8.50186
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR001881EGF-like_Ca-bd_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00004547 vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.778e-33
Identity = 104/344 (30.23%), Postives = 156/344 (45.35%), Query Frame = -1 
Query: 4352 QNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQR-LVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALYNTMQYFFNGNDKFLIFGNCKTPAELKDDDIYEDLYRTNK----------LKCTACSLNECQNNSTCKVVDKLDYTCVCSEKNQGRFCQFE-NACLDNPCQHNGTCL---KIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLRIVDTFMCNCSSGFLGEKCE--IEKACYFNNPCQNNGTCQPLDETSDKYQCLCVGGYSGQNCE 5332
            +++ +++ E N +  +    L+   +L  I    N++  +    F+  + L  L LSYN+L  +P   F   R L +L +  N  +  P  +FN    DLT+ S               L L  NPLHCDC+L    ++   G  +  I   C +P  + D  +        +           KC AC  + C+NN TC       Y C C    +G+ C    N C+ NPCQH GTC       D F C+C  GF G++CEI      +N C+NN TC+  ++ ++C C   + GE C+  I+      N CQ+   C PLD+    + C CV GYSG+ CE
Sbjct:  752 KDVTELYLEGNHLTAVPR-ELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFN----DLTSLS--------------HLALGTNPLHCDCSLRWLSEWVKAGYKEPGI-ARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDK---GFSCECVPGYSGKLCE 1072

HSP 2 Score: 138.272 bits (347), Expect = 2.660e-32
Identity = 103/344 (29.94%), Postives = 156/344 (45.35%), Query Frame = -2 
Query: 1960 QNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQR-LVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALFNTMQYFFNGNDKFLIFGNCKTPADLKDDDIYEDLYRTNK----------LKCTACSLNECQNNSTCKVVDKLDYTCVCSEKNQGRFCQFE-NACLDNPCQNNGTCL---KIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLEIVDTFMCNCSSGFLGEKCG--IEKACYFNNPCQNNGTCQPLDETSDKYQCLCVGGYSGQNCE 2940
            +++ +++ E N +  +    L+   +L  I    N++  +    F+  + L  L LSYN+L  +P   F   R L +L +  N  +  P  +FN    DLT+ S               L L  NPLHCDC+L    ++   G  +  I   C +P  + D  +        +           KC AC  + C+NN TC       Y C C    +G+ C    N C+ NPCQ+ GTC       D F C+C  GF G++CEI      +N C+NN TC++ ++ ++C C   + GE C   I+      N CQ+   C PLD+    + C CV GYSG+ CE
Sbjct:  752 KDVTELYLEGNHLTAVPR-ELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFN----DLTSLS--------------HLALGTNPLHCDCSLRWLSEWVKAGYKEPGI-ARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDK---GFSCECVPGYSGKLCE 1072
The following BLAST results are available for this feature:
BLAST of TCONS_00004547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT31.778e-3330.23Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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